RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 XPO4Q9C0E2 1151 aaKnown RBP18.97■□□□□ 0.63
CLCNKA-203ENST00000439316 ZNF652Q9Y2D9 606 aa18.97■□□□□ 0.63
CLCNKA-203ENST00000439316 KIF2AO00139 706 aaPredicted RBP18.97■□□□□ 0.63
CLCNKA-203ENST00000439316 SH2B2O14492 632 aaPredicted RBP18.97■□□□□ 0.63
CLCNKA-203ENST00000439316 RTCBQ9Y3I0 505 aaKnown RBP18.97■□□□□ 0.63
CLCNKA-203ENST00000439316 WDHD1O75717 1129 aaPredicted RBP18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 KCNJ6P48051 423 aa18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 TPM4P67936 248 aa18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 TRDNQ13061 729 aa18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 DHX8Q14562 1220 aaKnown RBP18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 NAA30Q147X3 362 aaPredicted RBP18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 PARP10Q53GL7 1025 aa18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 CLEC4GQ6UXB4 293 aa18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 CYB5R4Q7L1T6 521 aa18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 FBXO41Q8TF61 875 aa18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 IFNKQ9P0W0 207 aa18.96■□□□□ 0.63
CLCNKA-203ENST00000439316 SPDYE4A6NLX3 237 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 IKBKBO14920 756 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 CDKL5O76039 1030 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 SMC2O95347 1197 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 METAP2P50579 478 aaKnown RBP eCLIP18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 TTF1Q15361 905 aaPredicted RBP18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 UBE3CQ15386 1083 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 ARMCX5Q6P1M9 558 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 VGLL2Q8N8G2 317 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 ALG1Q9BT22 464 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 UTP14AQ9BVJ6 771 aaKnown RBP18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 TRMT1Q9NXH9 659 aaKnown RBP18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 RGS17Q9UGC6 210 aaPredicted RBP18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 DENND2AQ9ULE3 1009 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 HPSEQ9Y251 543 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 FAM237AA0A1B0GTK4 181 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 BIN1O00499 593 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 PPP6R2O75170 966 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 TMC6Q7Z403 805 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 VPS37DQ86XT2 251 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 TTLL11Q8NHH1 800 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 NKX2-3Q8TAU0 364 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 PIH1D3Q9NQM4 214 aaKnown RBP18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 NARFQ9UHQ1 456 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 TUBE1Q9UJT0 475 aa18.95■□□□□ 0.62
CLCNKA-203ENST00000439316 PDE8AO60658 829 aa18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 ITGA6P23229 1130 aa18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 CTSWP56202 376 aa18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 PTPAQ15257 358 aa18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 SLC9C2Q5TAH2 1124 aa18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 E4F1Q66K89 784 aaPredicted RBP18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 APOA5Q6Q788 366 aa18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 AIFM3Q96NN9 605 aa18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 SRP68Q9UHB9 627 aaKnown RBP18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 LRP5O75197 1615 aa18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 SCN7AQ01118 1682 aa18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 MYO5AQ9Y4I1 1855 aaKnown RBP18.94■□□□□ 0.62
CLCNKA-203ENST00000439316 KRT40Q6A162 431 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 LDHAL6AQ6ZMR3 332 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 KIF18AQ8NI77 898 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 GTPBP4Q9BZE4 634 aaKnown RBP18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 GREM2Q9H772 168 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 OGFRQ9NZT2 677 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 ZNF215Q9UL58 517 aaPredicted RBP18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 ARAP2Q8WZ64 1704 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 MARCKSP29966 332 aaPredicted RBP18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 SYKP43405 635 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 JMYQ8N9B5 988 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 ARHGEF1Q92888 912 aaKnown RBP18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 TMEM87BQ96K49 555 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 AK7Q96M32 723 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 HSD3B7Q9H2F3 369 aa18.93■□□□□ 0.62
CLCNKA-203ENST00000439316 ANKRD18BA2A2Z9 1011 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 PSDA5PKW4 1024 aaPredicted RBP18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 ZPR1O75312 459 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 NTSR2O95665 410 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 SFPQP23246 707 aaKnown RBP eCLIP18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 CDC27P30260 824 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 CPLX2Q6PUV4 134 aaKnown RBP18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 SHC4Q6S5L8 630 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 ERO1AQ96HE7 468 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 MAP3K14Q99558 947 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 ZNF532Q9HCE3 1301 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 ARID4AP29374 1257 aaPredicted RBP18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 SLC27A3Q5K4L6 730 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 BICDL1Q6ZP65 573 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 PPP1R13BQ96KQ4 1090 aa18.92■□□□□ 0.62
CLCNKA-203ENST00000439316 TIAM2Q8IVF5 1701 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 TCRBV5S4A2TA0A5A2 114 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 B4E1Z4 1266 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 PDE6AP16499 860 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 FANCCQ00597 558 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 NTRK3Q16288 839 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 RESP18Q5W5W9 173 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 TBC1D9BQ66K14 1250 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 POTEAQ6S8J7 498 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 SGMS1Q86VZ5 419 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 SENP2Q9HC62 589 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 CNNM1Q9NRU3 951 aa18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 DDX41Q9UJV9 622 aaKnown RBP18.91■□□□□ 0.62
CLCNKA-203ENST00000439316 STK36Q9NRP7 1315 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 RXRAP19793 462 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 ALX1Q15699 326 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 TRAPPC3LQ5T215 181 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms