RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ATG3Q9NT62 314 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 VPS54Q9P1Q0 977 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 ERLIN1O75477 346 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 SNW1Q13573 536 aaKnown RBP13.97□□□□□ -0.17
TCOF1-205ENST00000439160 FAM114A1Q8IWE2 563 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 CCDC150Q8NCX0 1101 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 KCNH3Q9ULD8 1083 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 MYO6Q9UM54 1294 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 MTMR6Q9Y217 621 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 MAST3O60307 1309 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 CASQ1P31415 396 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 SSR1P43307 286 aaKnown RBP13.97□□□□□ -0.17
TCOF1-205ENST00000439160 PPP4R3AQ6IN85 833 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 VPS36Q86VN1 386 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 TTLL11Q8NHH1 800 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 IFNKQ9P0W0 207 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 SRP68Q9UHB9 627 aaKnown RBP13.97□□□□□ -0.17
TCOF1-205ENST00000439160 TTF2Q9UNY4 1162 aaKnown RBP13.97□□□□□ -0.17
TCOF1-205ENST00000439160 GJA3Q9Y6H8 435 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 ELP1O95163 1332 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 RIMBP3CA6NJZ7 1639 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 RIMBP3BA6NNM3 1639 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 RIMBP3Q9UFD9 1639 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 USP8P40818 1118 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 UBE3CQ15386 1083 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 ZYXQ15942 572 aaKnown RBP13.97□□□□□ -0.17
TCOF1-205ENST00000439160 ZNF274Q96GC6 653 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-205ENST00000439160 MMRN2Q9H8L6 949 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 ZKSCAN5Q9Y2L8 839 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 SUSD4Q5VX71 490 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 PDCL2Q8N4E4 241 aa13.97□□□□□ -0.17
TCOF1-205ENST00000439160 ZNF804BA4D1E1 1349 aa13.96□□□□□ -0.17
TCOF1-205ENST00000439160 SNAP23O00161 211 aa13.96□□□□□ -0.17
TCOF1-205ENST00000439160 GNG11P61952 73 aa13.96□□□□□ -0.17
TCOF1-205ENST00000439160 UBE4AQ14139 1066 aa13.96□□□□□ -0.17
TCOF1-205ENST00000439160 NOLC1Q14978 699 aaKnown RBP eCLIP13.96□□□□□ -0.17
TCOF1-205ENST00000439160 JAKMIP3Q5VZ66 844 aa13.96□□□□□ -0.17
TCOF1-205ENST00000439160 TBC1D22AQ8WUA7 517 aa13.96□□□□□ -0.17
TCOF1-205ENST00000439160 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.96□□□□□ -0.17
TCOF1-205ENST00000439160 PTGS1P23219 599 aa13.96□□□□□ -0.17
TCOF1-205ENST00000439160 DNAJC5Q9H3Z4 198 aa13.96□□□□□ -0.17
TCOF1-205ENST00000439160 POLR2DO15514 142 aaKnown RBP13.96□□□□□ -0.18
TCOF1-205ENST00000439160 SPAG1Q07617 926 aa13.96□□□□□ -0.18
TCOF1-205ENST00000439160 DOK7Q18PE1 504 aa13.96□□□□□ -0.18
TCOF1-205ENST00000439160 OSBP2Q969R2 916 aa13.96□□□□□ -0.18
TCOF1-205ENST00000439160 ERVV-1B6SEH8 477 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 USO1O60763 962 aaKnown RBP13.95□□□□□ -0.18
TCOF1-205ENST00000439160 MRPL12P52815 198 aaKnown RBP13.95□□□□□ -0.18
TCOF1-205ENST00000439160 FAM193AP78312 1265 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 FCHSD1Q86WN1 690 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 CPS1P31327 1500 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 NCAPD2Q15021 1401 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 TNS3Q68CZ2 1445 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 ALDH1B1P30837 517 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 PLS1Q14651 629 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 TNKSO95271 1327 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 PALLDQ8WX93 1383 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 AKR1B10O60218 316 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 PFKFB2O60825 505 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 ZSWIM4Q9H7M6 989 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 ADCY9O60503 1353 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 MYCNP04198 464 aaPredicted RBP13.95□□□□□ -0.18
TCOF1-205ENST00000439160 SCNN1DP51172 638 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 USP28Q96RU2 1077 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 CENPHQ9H3R5 247 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 C1orf167Q5SNV9 1468 aa13.95□□□□□ -0.18
TCOF1-205ENST00000439160 SLC1A4P43007 532 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 SLFNL1Q499Z3 407 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 MYSM1Q5VVJ2 828 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 IQCEQ6IPM2 695 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 STXBP4Q6ZWJ1 553 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 KIAA0825Q8IV33 1275 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 CTAGE1Q96RT6 745 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 PUS7LQ9H0K6 701 aaKnown RBP13.94□□□□□ -0.18
TCOF1-205ENST00000439160 CLSTN2Q9H4D0 955 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 RGS12O14924 1447 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 M0R2C6 588 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 ZNF202O95125 648 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 PDIA3P30101 505 aaKnown RBP13.94□□□□□ -0.18
TCOF1-205ENST00000439160 RDXP35241 583 aaKnown RBP13.94□□□□□ -0.18
TCOF1-205ENST00000439160 CETN1Q12798 172 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 TTC38Q5R3I4 469 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 UIMC1Q96RL1 719 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 USP40Q9NVE5 1235 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 ARPP21Q9UBL0 812 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-205ENST00000439160 PIK3C2BO00750 1634 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 SCRN1Q12765 414 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 MAPK8IP1Q9UQF2 711 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 PPIP5K2O43314 1243 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 PAXIP1Q6ZW49 1069 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-205ENST00000439160 FANCBQ8NB91 859 aa13.94□□□□□ -0.18
TCOF1-205ENST00000439160 MTX1Q13505 466 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 PPP2R5BQ15173 497 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.93□□□□□ -0.182e-6■■■■■ 129.4
TCOF1-205ENST00000439160 ZNF445P59923 1031 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 MYL5Q02045 173 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 CEP135Q66GS9 1140 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 SPAG5Q96R06 1193 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 NBPF26B4DH59 902 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 PRKAB2O43741 272 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms