RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 KIF28PB7ZC32 967 aa8.46□□□□□ -1.05
CPSF6-202ENST00000435070 RPSAP08865 295 aaKnown RBP8.46□□□□□ -1.05
CPSF6-202ENST00000435070 BEND3Q5T5X7 828 aa8.46□□□□□ -1.05
CPSF6-202ENST00000435070 ADGRB3O60242 1522 aa8.46□□□□□ -1.05
CPSF6-202ENST00000435070 BMP6P22004 513 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 PDIA3P30101 505 aaKnown RBP8.46□□□□□ -1.06
CPSF6-202ENST00000435070 PRPF38AQ8NAV1 312 aaKnown RBP8.46□□□□□ -1.06
CPSF6-202ENST00000435070 CAGE1Q8TC20 777 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 CDC25AP30304 524 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 MATR3P43243 847 aaKnown RBP eCLIP8.46□□□□□ -1.063e-7■■■■□ 23.1
CPSF6-202ENST00000435070 EGFL6Q8IUX8 553 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 LLPHQ9BRT6 129 aaKnown RBP8.46□□□□□ -1.06
CPSF6-202ENST00000435070 TEX13AQ9BXU3 409 aaPredicted RBP8.46□□□□□ -1.06
CPSF6-202ENST00000435070 C19orf44Q9H6X5 657 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 MYO6Q9UM54 1294 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 ASXL2Q76L83 1435 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 ATP7AQ04656 1500 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 CARMIL3Q8ND23 1372 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 ALDH1L1O75891 902 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 MYBL2P10244 700 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 NEDD9Q14511 834 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 POTEDQ86YR6 584 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 SGSM3Q96HU1 749 aa8.46□□□□□ -1.06
CPSF6-202ENST00000435070 GOLGA6BA6NDN3 693 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 RXRAP19793 462 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 PIP4K2BP78356 416 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 IL17REQ8NFR9 667 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 SCLT1Q96NL6 688 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 KCNQ3O43525 872 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 CMA1P23946 247 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 SND1Q7KZF4 910 aaKnown RBP eCLIP8.45□□□□□ -1.06
CPSF6-202ENST00000435070 CASP14P31944 242 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 TBX2Q13207 712 aaPredicted RBP8.45□□□□□ -1.06
CPSF6-202ENST00000435070 CCDC102BQ68D86 513 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 FAM43BQ6ZT52 329 aaPredicted RBP8.45□□□□□ -1.06
CPSF6-202ENST00000435070 METTL16Q86W50 562 aaKnown RBP8.45□□□□□ -1.06
CPSF6-202ENST00000435070 ZKSCAN4Q969J2 545 aaPredicted RBP8.45□□□□□ -1.06
CPSF6-202ENST00000435070 MIEF2Q96C03 454 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 U3KPZ7 1027 aaPredicted RBP8.45□□□□□ -1.06
CPSF6-202ENST00000435070 NEURL4Q96JN8 1562 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 COL15A1P39059 1388 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 GPTP24298 496 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 SH2D3CQ8N5H7 860 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 USHBP1Q8N6Y0 703 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 EFCAB6Q5THR3 1501 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 CCT6AP40227 531 aaKnown RBP8.45□□□□□ -1.06
CPSF6-202ENST00000435070 ATL3Q6DD88 541 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 SHC4Q6S5L8 630 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 ANKRD18AQ8IVF6 992 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 COG1Q8WTW3 980 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 MMS19Q96T76 1030 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 POGZQ7Z3K3 1410 aa8.45□□□□□ -1.06
CPSF6-202ENST00000435070 YEATS4O95619 227 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 CLNS1AP54105 237 aaKnown RBP8.44□□□□□ -1.06
CPSF6-202ENST00000435070 SF3A3Q12874 501 aaKnown RBP eCLIP8.44□□□□□ -1.066e-6■■■□□ 15.2
CPSF6-202ENST00000435070 NAA25Q14CX7 972 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 MAP3K2Q9Y2U5 619 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 USP42Q9H9J4 1324 aaKnown RBP8.44□□□□□ -1.06
CPSF6-202ENST00000435070 CDC42BPGQ6DT37 1551 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 EYA1Q99502 592 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 CCDC61Q9Y6R9 512 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 DCAF8L1A6NGE4 600 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 GNAT3A8MTJ3 354 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 WASLO00401 505 aaPredicted RBP8.44□□□□□ -1.06
CPSF6-202ENST00000435070 PEX19P40855 299 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 SELENOOQ9BVL4 669 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 TMED8Q6PL24 325 aaPredicted RBP8.44□□□□□ -1.06
CPSF6-202ENST00000435070 ALDH8A1Q9H2A2 487 aaPredicted RBP8.44□□□□□ -1.06
CPSF6-202ENST00000435070 ARHGEF28Q8N1W1 1705 aaKnown RBP8.44□□□□□ -1.06
CPSF6-202ENST00000435070 GOLGA8BA8MQT2 603 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 TICAM2Q86XR7 235 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 SUCLG2Q96I99 432 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 TUBE1Q9UJT0 475 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 KLF18A0A0U1RQI7 1052 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 CHUKO15111 745 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 PPP1R12BO60237 982 aaPredicted RBP8.44□□□□□ -1.06
CPSF6-202ENST00000435070 C1orf141Q5JVX7 400 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 CEP85LQ5SZL2 805 aa8.44□□□□□ -1.06
CPSF6-202ENST00000435070 FBXO31Q5XUX0 539 aaPredicted RBP8.44□□□□□ -1.06
CPSF6-202ENST00000435070 MED23Q9ULK4 1368 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 AGPSO00116 658 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 CASP1P29466 404 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 WHAMMP3Q1A5X7 153 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 AMOTL1Q8IY63 956 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 POLR3EQ9NVU0 708 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 KCNH3Q9ULD8 1083 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 EIF3HO15372 352 aaKnown RBP eCLIP8.43□□□□□ -1.069e-7■■■■□ 25.4
CPSF6-202ENST00000435070 FXR1P51114 621 aaKnown RBP eCLIP8.43□□□□□ -1.06
CPSF6-202ENST00000435070 CDR1P51861 262 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 IFT88Q13099 833 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 PPFIA1Q13136 1202 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 SLC9C2Q5TAH2 1124 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 IQCA1Q86XH1 822 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 ARL8AQ96BM9 186 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 RRP36Q96EU6 259 aaKnown RBP8.43□□□□□ -1.06
CPSF6-202ENST00000435070 USP14P54578 494 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 MCMDC2Q4G0Z9 681 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 SMYD4Q8IYR2 804 aaPredicted RBP8.43□□□□□ -1.06
CPSF6-202ENST00000435070 RUFY1Q96T51 708 aa8.43□□□□□ -1.06
CPSF6-202ENST00000435070 NBPF3Q9H094 633 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms