RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 PREPP48147 710 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 SNAP47Q5SQN1 464 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 DZIP1LQ8IYY4 767 aaKnown RBP7.2□□□□□ -1.26
VPS54-204ENST00000416400 PHC3Q8NDX5 983 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 JARID2Q92833 1246 aaPredicted RBP7.2□□□□□ -1.26
VPS54-204ENST00000416400 UBL7Q96S82 380 aaPredicted RBP7.2□□□□□ -1.26
VPS54-204ENST00000416400 SPOCK3Q9BQ16 436 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 KCNF1Q9H3M0 494 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 ATXN3LQ9H3M9 355 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 KBTBD4Q9NVX7 518 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 TLR6Q9Y2C9 796 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 HIF3AQ9Y2N7 669 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 BPNT1O95861 308 aa7.19□□□□□ -1.26
VPS54-204ENST00000416400 ASPAP45381 313 aa7.19□□□□□ -1.26
VPS54-204ENST00000416400 DOC2BQ14184 412 aa7.19□□□□□ -1.26
VPS54-204ENST00000416400 HDXQ7Z353 690 aa7.19□□□□□ -1.26
VPS54-204ENST00000416400 WDR89Q96FK6 387 aaPredicted RBP7.19□□□□□ -1.26
VPS54-204ENST00000416400 FAM46AQ96IP4 442 aaKnown RBP7.19□□□□□ -1.26
VPS54-204ENST00000416400 COPRSQ9NQ92 184 aa7.19□□□□□ -1.26
VPS54-204ENST00000416400 TIAF1O95411 115 aa7.18□□□□□ -1.26
VPS54-204ENST00000416400 PF4P02776 101 aa7.18□□□□□ -1.26
VPS54-204ENST00000416400 BMP3P12645 472 aa7.18□□□□□ -1.26
VPS54-204ENST00000416400 TFE3P19532 575 aaPredicted RBP7.18□□□□□ -1.26
VPS54-204ENST00000416400 DNAJA1P31689 397 aaKnown RBP7.18□□□□□ -1.26
VPS54-204ENST00000416400 LMNB2Q03252 620 aa7.18□□□□□ -1.26
VPS54-204ENST00000416400 CAMK2GQ13555 558 aaPredicted RBP7.18□□□□□ -1.26
VPS54-204ENST00000416400 SEPT6Q14141 434 aa7.18□□□□□ -1.26
VPS54-204ENST00000416400 TRIM42Q8IWZ5 723 aa7.18□□□□□ -1.26
VPS54-204ENST00000416400 MYRFLQ96LU7 910 aa7.18□□□□□ -1.26
VPS54-204ENST00000416400 SSU72Q9NP77 194 aaKnown RBP7.18□□□□□ -1.26
VPS54-204ENST00000416400 TPSG1Q9NRR2 321 aa7.18□□□□□ -1.26
VPS54-204ENST00000416400 PRKAG2Q9UGJ0 569 aa7.18□□□□□ -1.26
VPS54-204ENST00000416400 PCDHB5Q9Y5E4 795 aa7.18□□□□□ -1.26
VPS54-204ENST00000416400 SHROOM4Q9ULL8 1493 aa7.17□□□□□ -1.26
VPS54-204ENST00000416400 TMPRSS2O15393 492 aa7.17□□□□□ -1.26
VPS54-204ENST00000416400 RNGTTO60942 597 aaKnown RBP7.17□□□□□ -1.26
VPS54-204ENST00000416400 RAB6AP20340 208 aa7.17□□□□□ -1.26
VPS54-204ENST00000416400 RASIP1Q5U651 963 aa7.17□□□□□ -1.26
VPS54-204ENST00000416400 MPRIPQ6WCQ1 1025 aa7.17□□□□□ -1.26
VPS54-204ENST00000416400 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.17□□□□□ -1.26
VPS54-204ENST00000416400 CCDC84Q86UT8 332 aaPredicted RBP7.17□□□□□ -1.26
VPS54-204ENST00000416400 C2CD4AQ8NCU7 369 aaPredicted RBP7.17□□□□□ -1.26
VPS54-204ENST00000416400 PPP1R9AQ9ULJ8 1098 aa7.17□□□□□ -1.26
VPS54-204ENST00000416400 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.16□□□□□ -1.26
VPS54-204ENST00000416400 DCDC2CA8MYV0 355 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 ITGB2P05107 769 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 EIF4A3P38919 411 aaKnown RBP7.16□□□□□ -1.26
VPS54-204ENST00000416400 GJA8P48165 433 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 ERVK-24P63145 666 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 ARID5AQ03989 594 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 FAM160A1Q05DH4 1040 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 PAK2Q13177 524 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 MAP7Q14244 749 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 CDC37L1Q7L3B6 337 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 VPS37DQ86XT2 251 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 GOLM1Q8NBJ4 401 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 GPRASP2Q96D09 838 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 GMLQ99445 158 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 SSBP4Q9BWG4 385 aaPredicted RBP7.16□□□□□ -1.26
VPS54-204ENST00000416400 CRIM1Q9NZV1 1036 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 STOML1Q9UBI4 398 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 RAXQ9Y2V3 346 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 SUPT16HQ9Y5B9 1047 aaKnown RBP7.16□□□□□ -1.26
VPS54-204ENST00000416400 CSADQ9Y600 493 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 ACTL7BQ9Y614 415 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 SNCAIPQ9Y6H5 919 aa7.16□□□□□ -1.26
VPS54-204ENST00000416400 ATP2B1P20020 1258 aa7.15□□□□□ -1.26
VPS54-204ENST00000416400 MAP4P27816 1152 aaKnown RBP7.15□□□□□ -1.26
VPS54-204ENST00000416400 ZC3H12AQ5D1E8 599 aaKnown RBP7.15□□□□□ -1.26
VPS54-204ENST00000416400 WIPI1Q5MNZ9 446 aaPredicted RBP7.15□□□□□ -1.26
VPS54-204ENST00000416400 PAOXQ6QHF9 649 aa7.15□□□□□ -1.26
VPS54-204ENST00000416400 BEND4Q6ZU67 534 aa7.15□□□□□ -1.26
VPS54-204ENST00000416400 C12orf40Q86WS4 652 aa7.15□□□□□ -1.26
VPS54-204ENST00000416400 KIAA0825Q8IV33 1275 aa7.15□□□□□ -1.26
VPS54-204ENST00000416400 FAM20CQ8IXL6 584 aa7.15□□□□□ -1.26
VPS54-204ENST00000416400 FANCD2OSQ96PS1 177 aa7.15□□□□□ -1.26
VPS54-204ENST00000416400 SPON2Q9BUD6 331 aa7.15□□□□□ -1.26
VPS54-204ENST00000416400 CACNA2D2Q9NY47 1150 aa7.15□□□□□ -1.26
VPS54-204ENST00000416400 FAM95CA0A1B0GW59 222 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 PRAMEF27A3QJZ7 478 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 PROCP04070 461 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 RPL6Q02878 288 aaKnown RBP7.14□□□□□ -1.27
VPS54-204ENST00000416400 PTPN11Q06124 597 aaPredicted RBP7.14□□□□□ -1.27
VPS54-204ENST00000416400 NFKBIBQ15653 356 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 SGO2Q562F6 1265 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 CLEC10AQ8IUN9 316 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 ARMC10Q8N2F6 343 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 FBLIM1Q8WUP2 373 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 GATAD2BQ8WXI9 593 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 GAL3ST3Q96A11 431 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 PLPPR2Q96GM1 343 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 RHOVQ96L33 236 aa7.14□□□□□ -1.27
VPS54-204ENST00000416400 H2AFB1P0C5Y9 115 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 H2AFB2P0C5Z0 115 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 HCLS1P14317 486 aaPredicted RBP7.13□□□□□ -1.27
VPS54-204ENST00000416400 ETF1P62495 437 aaKnown RBP7.13□□□□□ -1.27
VPS54-204ENST00000416400 TTLL4Q14679 1199 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 PPM1JQ5JR12 505 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 LRFN4Q6PJG9 635 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 BNC2Q6ZN30 1099 aaPredicted RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms