RNA–Protein interactions for RNA: ENST00000415298.5

AP1S3-205, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 1 (best)

Gene AP1S3, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-205ENST00000415298 PLA2G12BQ9BX93 195 aa23.44■■□□□ 1.34
AP1S3-205ENST00000415298 ABCC12Q96J65 1359 aa23.44■■□□□ 1.34
AP1S3-205ENST00000415298 ANKRD65E5RJM6 399 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 SURF6O75683 361 aaKnown RBP23.43■■□□□ 1.34
AP1S3-205ENST00000415298 SASH3O75995 380 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 SERPINB2P05120 415 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 TRIM74Q86UV6 250 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 TRIM73Q86UV7 250 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 NLGN1Q8N2Q7 840 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 ARMC2Q8NEN0 867 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 N4BP2L2Q92802 583 aaPredicted RBP23.43■■□□□ 1.34
AP1S3-205ENST00000415298 KCNB2Q92953 911 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 ZNF594Q96JF6 807 aaPredicted RBP23.43■■□□□ 1.34
AP1S3-205ENST00000415298 KDM4CQ9H3R0 1056 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 CARMIL3Q8ND23 1372 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 PDE8AO60658 829 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 RFX5P48382 616 aaPredicted RBP23.43■■□□□ 1.34
AP1S3-205ENST00000415298 MKL1Q969V6 931 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 SIL1Q9H173 461 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 GREM2Q9H772 168 aa23.43■■□□□ 1.34
AP1S3-205ENST00000415298 POLRMTO00411 1230 aaKnown RBP23.42■■□□□ 1.34
AP1S3-205ENST00000415298 CSF1RP07333 972 aa23.42■■□□□ 1.34
AP1S3-205ENST00000415298 CCNHP51946 323 aaPredicted RBP23.42■■□□□ 1.34
AP1S3-205ENST00000415298 FOXD4L5Q5VV16 416 aaPredicted RBP23.42■■□□□ 1.34
AP1S3-205ENST00000415298 TBC1D9Q6ZT07 1266 aa23.42■■□□□ 1.34
AP1S3-205ENST00000415298 FOXD4L4Q8WXT5 416 aaPredicted RBP23.42■■□□□ 1.34
AP1S3-205ENST00000415298 ORC3Q9UBD5 711 aaPredicted RBP23.42■■□□□ 1.34
AP1S3-205ENST00000415298 CTSWP56202 376 aa23.42■■□□□ 1.34
AP1S3-205ENST00000415298 PSMD2Q13200 908 aa23.42■■□□□ 1.34
AP1S3-205ENST00000415298 SRCAPQ6ZRS2 3230 aa23.42■■□□□ 1.34
AP1S3-205ENST00000415298 SMARCA5O60264 1052 aaPredicted RBP23.41■■□□□ 1.34
AP1S3-205ENST00000415298 MMP10P09238 476 aa23.41■■□□□ 1.34
AP1S3-205ENST00000415298 DRC7Q8IY82 874 aa23.41■■□□□ 1.34
AP1S3-205ENST00000415298 USP26Q9BXU7 913 aa23.41■■□□□ 1.34
AP1S3-205ENST00000415298 SMC3Q9UQE7 1217 aa23.41■■□□□ 1.34
AP1S3-205ENST00000415298 FAM163BP0C2L3 166 aa23.41■■□□□ 1.34
AP1S3-205ENST00000415298 PTPN12Q05209 780 aaKnown RBP23.41■■□□□ 1.34
AP1S3-205ENST00000415298 SCRN1Q12765 414 aa23.41■■□□□ 1.34
AP1S3-205ENST00000415298 PRR5LQ6MZQ0 368 aa23.41■■□□□ 1.34
AP1S3-205ENST00000415298 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.41■■□□□ 1.34
AP1S3-205ENST00000415298 CLIP2Q9UDT6 1046 aa23.41■■□□□ 1.34
AP1S3-205ENST00000415298 COL24A1Q17RW2 1714 aa23.41■■□□□ 1.34
AP1S3-205ENST00000415298 DDX60Q8IY21 1712 aaKnown RBP23.4■■□□□ 1.34
AP1S3-205ENST00000415298 NF2P35240 595 aa23.4■■□□□ 1.34
AP1S3-205ENST00000415298 RPS6KA3P51812 740 aa23.4■■□□□ 1.34
AP1S3-205ENST00000415298 R3HDM1Q15032 1099 aaKnown RBP23.4■■□□□ 1.34
AP1S3-205ENST00000415298 SF3A1Q15459 793 aaKnown RBP23.4■■□□□ 1.34
AP1S3-205ENST00000415298 NYXQ9GZU5 481 aa23.4■■□□□ 1.34
AP1S3-205ENST00000415298 SEC31AO94979 1220 aaKnown RBP23.4■■□□□ 1.34
AP1S3-205ENST00000415298 RBBP5Q15291 538 aaKnown RBP23.4■■□□□ 1.34
AP1S3-205ENST00000415298 CNBD1Q8NA66 436 aa23.4■■□□□ 1.34
AP1S3-205ENST00000415298 GCC1Q96CN9 775 aa23.4■■□□□ 1.34
AP1S3-205ENST00000415298 ST18O60284 1047 aa23.39■■□□□ 1.34
AP1S3-205ENST00000415298 LNPKQ9C0E8 428 aa23.39■■□□□ 1.34
AP1S3-205ENST00000415298 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.39■■□□□ 1.34
AP1S3-205ENST00000415298 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.39■■□□□ 1.34
AP1S3-205ENST00000415298 TMCO5BA8MYB1 307 aa23.39■■□□□ 1.33
AP1S3-205ENST00000415298 CCP110O43303 1012 aa23.39■■□□□ 1.33
AP1S3-205ENST00000415298 PPFIA2O75334 1257 aa23.39■■□□□ 1.33
AP1S3-205ENST00000415298 PDCD2Q16342 344 aaPredicted RBP23.39■■□□□ 1.33
AP1S3-205ENST00000415298 CCDC93Q567U6 631 aa23.39■■□□□ 1.33
AP1S3-205ENST00000415298 USP48Q86UV5 1035 aa23.39■■□□□ 1.33
AP1S3-205ENST00000415298 CACTINQ8WUQ7 758 aaKnown RBP23.39■■□□□ 1.33
AP1S3-205ENST00000415298 BAG1Q99933 345 aaPredicted RBP23.39■■□□□ 1.33
AP1S3-205ENST00000415298 SEC31BQ9NQW1 1179 aa23.39■■□□□ 1.33
AP1S3-205ENST00000415298 NRBP1Q9UHY1 535 aa23.39■■□□□ 1.33
AP1S3-205ENST00000415298 ABCD1P33897 745 aa23.38■■□□□ 1.33
AP1S3-205ENST00000415298 UBXN4Q92575 508 aa23.38■■□□□ 1.33
AP1S3-205ENST00000415298 CCDC97Q96F63 343 aaPredicted RBP23.38■■□□□ 1.33
AP1S3-205ENST00000415298 TSPAN18Q96SJ8 248 aa23.38■■□□□ 1.33
AP1S3-205ENST00000415298 USP27XA6NNY8 438 aa23.38■■□□□ 1.33
AP1S3-205ENST00000415298 RTN2O75298 545 aa23.38■■□□□ 1.33
AP1S3-205ENST00000415298 ITGA6P23229 1130 aa23.38■■□□□ 1.33
AP1S3-205ENST00000415298 SLC10A5Q5PT55 438 aa23.38■■□□□ 1.33
AP1S3-205ENST00000415298 CCDC34Q96HJ3 373 aa23.38■■□□□ 1.33
AP1S3-205ENST00000415298 MYH3P11055 1940 aa23.37■■□□□ 1.33
AP1S3-205ENST00000415298 PSDA5PKW4 1024 aaPredicted RBP23.37■■□□□ 1.33
AP1S3-205ENST00000415298 SLC5A9Q2M3M2 681 aa23.37■■□□□ 1.33
AP1S3-205ENST00000415298 TBC1D25Q3MII6 688 aa23.37■■□□□ 1.33
AP1S3-205ENST00000415298 C16orf71Q8IYS4 520 aaPredicted RBP23.37■■□□□ 1.33
AP1S3-205ENST00000415298 CCDC57Q2TAC2 916 aa23.37■■□□□ 1.33
AP1S3-205ENST00000415298 DDX11Q96FC9 970 aa23.37■■□□□ 1.33
AP1S3-205ENST00000415298 PUS3Q9BZE2 481 aaKnown RBP23.37■■□□□ 1.33
AP1S3-205ENST00000415298 NEMFO60524 1076 aa23.36■■□□□ 1.33
AP1S3-205ENST00000415298 MRPL12P52815 198 aaKnown RBP23.36■■□□□ 1.33
AP1S3-205ENST00000415298 NUCB1Q02818 461 aa23.36■■□□□ 1.33
AP1S3-205ENST00000415298 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.36■■□□□ 1.33
AP1S3-205ENST00000415298 SNUPNO95149 360 aaKnown RBP23.36■■□□□ 1.33
AP1S3-205ENST00000415298 MAGEA8P43361 318 aa23.36■■□□□ 1.33
AP1S3-205ENST00000415298 CC2D1AQ6P1N0 951 aaPredicted RBP23.36■■□□□ 1.33
AP1S3-205ENST00000415298 IL1RAPL2Q9NP60 686 aa23.36■■□□□ 1.33
AP1S3-205ENST00000415298 PPFIA4O75335 1185 aa23.35■■□□□ 1.33
AP1S3-205ENST00000415298 AP1G2O75843 785 aa23.35■■□□□ 1.33
AP1S3-205ENST00000415298 ZBTB7AO95365 584 aa23.35■■□□□ 1.33
AP1S3-205ENST00000415298 SETSIPP0DME0 302 aa23.35■■□□□ 1.33
AP1S3-205ENST00000415298 IFIT5Q13325 482 aaKnown RBP23.35■■□□□ 1.33
AP1S3-205ENST00000415298 LRRC24Q50LG9 513 aa23.35■■□□□ 1.33
AP1S3-205ENST00000415298 TMX3Q96JJ7 454 aa23.35■■□□□ 1.33
AP1S3-205ENST00000415298 COPRSQ9NQ92 184 aa23.35■■□□□ 1.33
AP1S3-205ENST00000415298 TAF1P21675 1872 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms