RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 DHX32Q7L7V1 743 aaKnown RBP7.88□□□□□ -1.15
VPS41-204ENST00000413141 RALYLQ86SE5 291 aaKnown RBP7.88□□□□□ -1.15
VPS41-204ENST00000413141 MB21D2Q8IYB1 491 aaPredicted RBP7.88□□□□□ -1.15
VPS41-204ENST00000413141 TEX11Q8IYF3 940 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 NCOA7Q8NI08 942 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 TMX3Q96JJ7 454 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 ALDH8A1Q9H2A2 487 aaPredicted RBP7.88□□□□□ -1.15
VPS41-204ENST00000413141 MKRN1Q9UHC7 482 aaKnown RBP7.88□□□□□ -1.15
VPS41-204ENST00000413141 ANAPC4Q9UJX5 808 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 CYP2D7A0A087X1C5 515 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 RAD17O75943 681 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 LARGE1O95461 756 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 VIL1P09327 827 aaKnown RBP7.87□□□□□ -1.15
VPS41-204ENST00000413141 PRELPP51888 382 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 ANTXR2P58335 489 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 HDLBPQ00341 1268 aaKnown RBP7.87□□□□□ -1.15
VPS41-204ENST00000413141 EXOSC10Q01780 885 aaKnown RBP7.87□□□□□ -1.15
VPS41-204ENST00000413141 CTDSPL2Q05D32 466 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 TRDNQ13061 729 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 ANKRD1Q15327 319 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 SBK1Q52WX2 424 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 AKNAD1Q5T1N1 836 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 Q6ZUG5 572 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 MAPKAPK5Q8IW41 473 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 SP7Q8TDD2 431 aaPredicted RBP7.87□□□□□ -1.15
VPS41-204ENST00000413141 JDP2Q8WYK2 163 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 ZDHHC15Q96MV8 337 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 MRIQ9BWK5 157 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 RNF41Q9H4P4 317 aaPredicted RBP7.87□□□□□ -1.15
VPS41-204ENST00000413141 CNNM2Q9H8M5 875 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 SERPINA10Q9UK55 444 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 LIMCH1Q9UPQ0 1083 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 TACC3Q9Y6A5 838 aa7.87□□□□□ -1.15
VPS41-204ENST00000413141 DICER1Q9UPY3 1922 aaKnown RBP7.86□□□□□ -1.15
VPS41-204ENST00000413141 MINDY4BA8MYZ0 360 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 USP17L12C9JPN9 530 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 USP17L21D6R901 530 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 SMIM22K7EJ46 135 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 PRC1O43663 620 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 HSP90AA1P07900 732 aaKnown RBP7.86□□□□□ -1.15
VPS41-204ENST00000413141 CYP2D6P10635 497 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 PCP11498 1178 aaKnown RBP7.86□□□□□ -1.15
VPS41-204ENST00000413141 MCM5P33992 734 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 DDIT3P35638 169 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 EVX2Q03828 476 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 CUL4AQ13619 759 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 APOBEC3HQ6NTF7 200 aaKnown RBP7.86□□□□□ -1.15
VPS41-204ENST00000413141 MFSD6Q6ZSS7 791 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 FBXL16Q8N461 479 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 SPRYD3Q8NCJ5 442 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 NKX2-3Q8TAU0 364 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 TGFBRAP1Q8WUH2 860 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 GMLQ99445 158 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 SYT17Q9BSW7 474 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 LRRC2Q9BYS8 371 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 AGXT2Q9BYV1 514 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 KRT23Q9C075 422 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 SLKQ9H2G2 1235 aaPredicted RBP7.86□□□□□ -1.15
VPS41-204ENST00000413141 MCM9Q9NXL9 1143 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 TPCN1Q9ULQ1 816 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS41-204ENST00000413141 PCDHAC2Q9Y5I4 1007 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 MYH1P12882 1939 aa7.86□□□□□ -1.15
VPS41-204ENST00000413141 SIPA1L1O43166 1804 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 B4E1Z4 1266 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 KDM4AO75164 1064 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 WDHD1O75717 1129 aaPredicted RBP7.85□□□□□ -1.15
VPS41-204ENST00000413141 FGRP09769 529 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 USP17L8P0C7I0 530 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 CXCL9Q07325 125 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 ST3GAL1Q11201 340 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 PICALMQ13492 652 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 ME3Q16798 604 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 SLC4A8Q2Y0W8 1093 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 CFAP100Q494V2 611 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 C12orf60Q5U649 245 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 CIAPIN1Q6FI81 312 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 CDC42EP5Q6NZY7 148 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 CYB5R4Q7L1T6 521 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 CHST3Q7LGC8 479 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 AMOTL1Q8IY63 956 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 AGBL3Q8NEM8 1001 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 BRF1Q92994 677 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 ZSCAN31Q96LW9 406 aaPredicted RBP7.85□□□□□ -1.15
VPS41-204ENST00000413141 LARP6Q9BRS8 491 aaKnown RBP7.85□□□□□ -1.15
VPS41-204ENST00000413141 DDX4Q9NQI0 724 aaKnown RBP7.85□□□□□ -1.15
VPS41-204ENST00000413141 INCENPQ9NQS7 918 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 SH2B1Q9NRF2 756 aaPredicted RBP7.85□□□□□ -1.15
VPS41-204ENST00000413141 USP40Q9NVE5 1235 aa7.85□□□□□ -1.15
VPS41-204ENST00000413141 ZBTB12Q9Y330 459 aaPredicted RBP7.85□□□□□ -1.15
VPS41-204ENST00000413141 COL2A1P02458 1487 aaPredicted RBP7.85□□□□□ -1.15
VPS41-204ENST00000413141 ZNF541Q9H0D2 1346 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 SBF1O95248 1867 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 SPDYE2BA6NHP3 402 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 FZD9O00144 591 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 SH2B2O14492 632 aaPredicted RBP7.84□□□□□ -1.15
VPS41-204ENST00000413141 ORC4O43929 436 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 SLC3A2P08195 630 aaKnown RBP7.84□□□□□ -1.15
VPS41-204ENST00000413141 SPDYE6P0CI01 402 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 YBX3P16989 372 aaKnown RBP eCLIP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms