RNA–Protein interactions for RNA: ENST00000394963.8

SMARCD1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD1, Length 3,658 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-202ENST00000394963 ANTXR2P58335 489 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 TFAP4Q01664 338 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 ZNF274Q96GC6 653 aaPredicted RBP18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 ANKRD2Q9GZV1 360 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 STRCP1A6NGW2 1772 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 BAG3O95817 575 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 ZNF804AQ7Z570 1209 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 ZNF654Q8IZM8 581 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 DDX19AQ9NUU7 478 aaKnown RBP18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 BSDC1Q9NW68 430 aaPredicted RBP18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 GGA1Q9UJY5 639 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 CARMIL3Q8ND23 1372 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 CCDC196A0A1B0GTZ2 297 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 TEX11Q8IYF3 940 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 CNNM3Q8NE01 707 aa18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 MRPS27Q92552 414 aaKnown RBP18.37■□□□□ 0.53
SMARCD1-202ENST00000394963 UBE4AQ14139 1066 aa18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 ZNF174Q15697 407 aa18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 TRMT1LQ7Z2T5 733 aaKnown RBP18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 HEATR3Q7Z4Q2 680 aa18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 PGBD1Q96JS3 809 aa18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 AOPEPQ8N6M6 819 aa18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 JMYQ8N9B5 988 aa18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 LMOD1P29536 600 aaPredicted RBP18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 SYKP43405 635 aa18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 CRACR2BQ8N4Y2 399 aaPredicted RBP18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 MXD3Q9BW11 206 aa18.36■□□□□ 0.53
SMARCD1-202ENST00000394963 GUCY1A2P33402 732 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 CACNB3P54284 484 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 TPM4P67936 248 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 CLEC4GQ6UXB4 293 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 FAM177A1Q8N128 213 aaPredicted RBP18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 FBXO18Q8NFZ0 1043 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 NKX2-3Q8TAU0 364 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 DBNDD1Q9H9R9 158 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 JCADQ9P266 1359 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 SERPINC1P01008 464 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 GNAT2P19087 354 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 KIAA0825Q8IV33 1275 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 PCDHA7Q9UN72 937 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 EXOSC10Q01780 885 aaKnown RBP18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 MYSM1Q5VVJ2 828 aa18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 MB21D2Q8IYB1 491 aaPredicted RBP18.35■□□□□ 0.53
SMARCD1-202ENST00000394963 CEP57L1Q8IYX8 460 aa18.34■□□□□ 0.53
SMARCD1-202ENST00000394963 RESTQ13127 1097 aa18.34■□□□□ 0.53
SMARCD1-202ENST00000394963 TMEM87BQ96K49 555 aa18.34■□□□□ 0.53
SMARCD1-202ENST00000394963 TRMT1Q9NXH9 659 aaKnown RBP18.34■□□□□ 0.53
SMARCD1-202ENST00000394963 UTRNP46939 3433 aa18.34■□□□□ 0.53
SMARCD1-202ENST00000394963 ANO1Q5XXA6 986 aa18.34■□□□□ 0.53
SMARCD1-202ENST00000394963 GPKOWQ92917 476 aaPredicted RBP eCLIP18.34■□□□□ 0.53
SMARCD1-202ENST00000394963 MRVI1Q9Y6F6 885 aa18.34■□□□□ 0.53
SMARCD1-202ENST00000394963 USP17L3A6NCW0 530 aa18.33■□□□□ 0.53
SMARCD1-202ENST00000394963 USP17L4A6NCW7 530 aa18.33■□□□□ 0.53
SMARCD1-202ENST00000394963 MCM7P33993 719 aa18.33■□□□□ 0.53
SMARCD1-202ENST00000394963 CCDC96Q2M329 555 aa18.33■□□□□ 0.53
SMARCD1-202ENST00000394963 BARGINQ6ZT62 677 aa18.33■□□□□ 0.53
SMARCD1-202ENST00000394963 USP17L1Q7RTZ2 530 aa18.33■□□□□ 0.53
SMARCD1-202ENST00000394963 CCDC186Q7Z3E2 898 aa18.33■□□□□ 0.53
SMARCD1-202ENST00000394963 FANCBQ8NB91 859 aa18.33■□□□□ 0.53
SMARCD1-202ENST00000394963 LLPHQ9BRT6 129 aaKnown RBP18.33■□□□□ 0.53
SMARCD1-202ENST00000394963 NDUFA8P51970 172 aa18.33■□□□□ 0.52
SMARCD1-202ENST00000394963 ABCC12Q96J65 1359 aa18.33■□□□□ 0.52
SMARCD1-202ENST00000394963 SPTY2D1Q68D10 685 aaPredicted RBP18.33■□□□□ 0.52
SMARCD1-202ENST00000394963 RASGRP4Q8TDF6 673 aa18.33■□□□□ 0.52
SMARCD1-202ENST00000394963 LRRC4BQ9NT99 713 aa18.33■□□□□ 0.52
SMARCD1-202ENST00000394963 PARP3Q9Y6F1 533 aa18.33■□□□□ 0.52
SMARCD1-202ENST00000394963 TNS2Q63HR2 1409 aa18.32■□□□□ 0.52
SMARCD1-202ENST00000394963 SH2B2O14492 632 aaPredicted RBP18.32■□□□□ 0.52
SMARCD1-202ENST00000394963 DHX58Q96C10 678 aa18.32■□□□□ 0.52
SMARCD1-202ENST00000394963 MMP10P09238 476 aa18.32■□□□□ 0.52
SMARCD1-202ENST00000394963 SF3B2Q13435 895 aaKnown RBP18.32■□□□□ 0.52
SMARCD1-202ENST00000394963 FAM200AQ8TCP9 573 aa18.32■□□□□ 0.52
SMARCD1-202ENST00000394963 WASF1Q92558 559 aa18.32■□□□□ 0.52
SMARCD1-202ENST00000394963 CBX8Q9HC52 389 aa18.32■□□□□ 0.52
SMARCD1-202ENST00000394963 CACNA1FO60840 1977 aa18.32■□□□□ 0.52
SMARCD1-202ENST00000394963 FAM196BA6NMK8 535 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 COBLO75128 1261 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 FDPSP14324 419 aaKnown RBP18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 PTGS1P23219 599 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 CDC25AP30304 524 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 CLIP2Q9UDT6 1046 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 KIF28PB7ZC32 967 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 PLEKHA8P1O95397 391 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 ARID4AP29374 1257 aaPredicted RBP18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 RBM26Q5T8P6 1007 aaKnown RBP18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 VGLL2Q8N8G2 317 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 NAT10Q9H0A0 1025 aaKnown RBP18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 STX17P56962 302 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 TXNRD1Q16881 649 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 ZNF827Q17R98 1081 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 DPP8Q6V1X1 898 aaPredicted RBP18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 PIK3AP1Q6ZUJ8 805 aa18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 RBM17Q96I25 401 aaKnown RBP18.31■□□□□ 0.52
SMARCD1-202ENST00000394963 SH3RF3Q8TEJ3 882 aaPredicted RBP18.3■□□□□ 0.52
SMARCD1-202ENST00000394963 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.3■□□□□ 0.522e-6■□□□□ 9
SMARCD1-202ENST00000394963 VWA3AA6NCI4 1184 aa18.3■□□□□ 0.52
SMARCD1-202ENST00000394963 SSBP05455 408 aaKnown RBP eCLIP18.3■□□□□ 0.52
SMARCD1-202ENST00000394963 CFAP100Q494V2 611 aa18.3■□□□□ 0.52
SMARCD1-202ENST00000394963 TMX1Q9H3N1 280 aa18.3■□□□□ 0.52
SMARCD1-202ENST00000394963 TTF2Q9UNY4 1162 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 140.1 ms