RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TBC1D2Q9BYX2 928 aa23.61■■□□□ 1.37
CLN3-205ENST00000359984 ANAPC4Q9UJX5 808 aa23.61■■□□□ 1.37
CLN3-205ENST00000359984 FLT1P17948 1338 aa23.61■■□□□ 1.37
CLN3-205ENST00000359984 BAZ2AQ9UIF9 1905 aaKnown RBP23.6■■□□□ 1.37
CLN3-205ENST00000359984 ST18O60284 1047 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 ARPP21Q9UBL0 812 aaPredicted RBP23.6■■□□□ 1.37
CLN3-205ENST00000359984 TACC3Q9Y6A5 838 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 LAMA4Q16363 1823 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 SHTN1A0MZ66 631 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 SPDYE2BA6NHP3 402 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 SPDYE6P0CI01 402 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 CYP2D6P10635 497 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 DLGAP5Q15398 846 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 C9orf131Q5VYM1 1079 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 DPF2Q92785 391 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 TTC14Q96N46 770 aa23.6■■□□□ 1.37
CLN3-205ENST00000359984 DDX4Q9NQI0 724 aaKnown RBP23.6■■□□□ 1.37
CLN3-205ENST00000359984 CDK5RAP2Q96SN8 1893 aa23.59■■□□□ 1.37
CLN3-205ENST00000359984 GRIN3BO60391 1043 aa23.59■■□□□ 1.37
CLN3-205ENST00000359984 RPS6KB1P23443 525 aa23.59■■□□□ 1.37
CLN3-205ENST00000359984 EVX2Q03828 476 aa23.59■■□□□ 1.37
CLN3-205ENST00000359984 TDRD3Q9H7E2 651 aaKnown RBP23.59■■□□□ 1.37
CLN3-205ENST00000359984 INCENPQ9NQS7 918 aa23.59■■□□□ 1.37
CLN3-205ENST00000359984 SAP30BPQ9UHR5 308 aaKnown RBP23.59■■□□□ 1.37
CLN3-205ENST00000359984 ZNF280AP59817 542 aaPredicted RBP23.58■■□□□ 1.37
CLN3-205ENST00000359984 AKNAD1Q5T1N1 836 aa23.58■■□□□ 1.37
CLN3-205ENST00000359984 MTMR14Q8NCE2 650 aa23.58■■□□□ 1.37
CLN3-205ENST00000359984 IL27Q8NEV9 243 aa23.58■■□□□ 1.37
CLN3-205ENST00000359984 HMGB1P09429 215 aaKnown RBP23.58■■□□□ 1.36
CLN3-205ENST00000359984 MMP14P50281 582 aa23.58■■□□□ 1.36
CLN3-205ENST00000359984 NFIAQ12857 509 aa23.58■■□□□ 1.36
CLN3-205ENST00000359984 PICALMQ13492 652 aa23.58■■□□□ 1.36
CLN3-205ENST00000359984 BECN1Q14457 450 aa23.58■■□□□ 1.36
CLN3-205ENST00000359984 C12orf60Q5U649 245 aa23.58■■□□□ 1.36
CLN3-205ENST00000359984 STAG1Q8WVM7 1258 aa23.58■■□□□ 1.36
CLN3-205ENST00000359984 PDRG1Q9NUG6 133 aa23.58■■□□□ 1.36
CLN3-205ENST00000359984 CACNB3P54284 484 aa23.57■■□□□ 1.36
CLN3-205ENST00000359984 HSCBQ8IWL3 235 aa23.57■■□□□ 1.36
CLN3-205ENST00000359984 GPC2Q8N158 579 aa23.57■■□□□ 1.36
CLN3-205ENST00000359984 STK11IPQ8N1F8 1099 aa23.57■■□□□ 1.36
CLN3-205ENST00000359984 NCOA7Q8NI08 942 aa23.57■■□□□ 1.36
CLN3-205ENST00000359984 MYOZ2Q9NPC6 264 aa23.57■■□□□ 1.36
CLN3-205ENST00000359984 NEDD4P46934 1319 aa23.56■■□□□ 1.36
CLN3-205ENST00000359984 TIAM2Q8IVF5 1701 aa23.56■■□□□ 1.36
CLN3-205ENST00000359984 SLC4A8Q2Y0W8 1093 aa23.56■■□□□ 1.36
CLN3-205ENST00000359984 MFSD6Q6ZSS7 791 aa23.56■■□□□ 1.36
CLN3-205ENST00000359984 DHX32Q7L7V1 743 aaKnown RBP23.56■■□□□ 1.36
CLN3-205ENST00000359984 MICALL2Q8IY33 904 aa23.56■■□□□ 1.36
CLN3-205ENST00000359984 ZBED3Q96IU2 234 aaPredicted RBP23.56■■□□□ 1.36
CLN3-205ENST00000359984 TCEANC2Q96MN5 208 aa23.56■■□□□ 1.36
CLN3-205ENST00000359984 ANP32EQ9BTT0 268 aa23.56■■□□□ 1.36
CLN3-205ENST00000359984 IDI2Q9BXS1 227 aa23.56■■□□□ 1.36
CLN3-205ENST00000359984 CNOT7Q9UIV1 285 aaKnown RBP23.56■■□□□ 1.36
CLN3-205ENST00000359984 POLR3DP05423 398 aaPredicted RBP23.56■■□□□ 1.36
CLN3-205ENST00000359984 MB21D2Q8IYB1 491 aaPredicted RBP23.56■■□□□ 1.36
CLN3-205ENST00000359984 NKX2-3Q8TAU0 364 aa23.56■■□□□ 1.36
CLN3-205ENST00000359984 NAV1Q8NEY1 1877 aa23.55■■□□□ 1.36
CLN3-205ENST00000359984 FOCADQ5VW36 1801 aa23.55■■□□□ 1.36
CLN3-205ENST00000359984 SLC4A3P48751 1232 aa23.55■■□□□ 1.36
CLN3-205ENST00000359984 TRDNQ13061 729 aa23.55■■□□□ 1.36
CLN3-205ENST00000359984 RALYLQ86SE5 291 aaKnown RBP23.55■■□□□ 1.36
CLN3-205ENST00000359984 AMOTL1Q8IY63 956 aa23.55■■□□□ 1.36
CLN3-205ENST00000359984 RNF41Q9H4P4 317 aaPredicted RBP23.55■■□□□ 1.36
CLN3-205ENST00000359984 FAM198AQ9UFP1 575 aa23.55■■□□□ 1.36
CLN3-205ENST00000359984 PLCD1P51178 756 aa23.54■■□□□ 1.36
CLN3-205ENST00000359984 EXOSC10Q01780 885 aaKnown RBP23.54■■□□□ 1.36
CLN3-205ENST00000359984 OSBPL5Q9H0X9 879 aaPredicted RBP23.54■■□□□ 1.36
CLN3-205ENST00000359984 ECM29Q5VYK3 1845 aa23.53■■□□□ 1.36
CLN3-205ENST00000359984 B4E1Z4 1266 aa23.53■■□□□ 1.36
CLN3-205ENST00000359984 EGFRP00533 1210 aa23.53■■□□□ 1.36
CLN3-205ENST00000359984 AK2P54819 239 aa23.53■■□□□ 1.36
CLN3-205ENST00000359984 ZFPM1Q8IX07 1006 aa23.53■■□□□ 1.36
CLN3-205ENST00000359984 CNNM2Q9H8M5 875 aa23.53■■□□□ 1.36
CLN3-205ENST00000359984 ZNF70Q9UC06 446 aaPredicted RBP23.53■■□□□ 1.36
CLN3-205ENST00000359984 DDX60LQ5H9U9 1706 aaKnown RBP23.53■■□□□ 1.36
CLN3-205ENST00000359984 NPM3O75607 178 aaKnown RBP23.53■■□□□ 1.36
CLN3-205ENST00000359984 FGRP09769 529 aa23.53■■□□□ 1.36
CLN3-205ENST00000359984 ALDH8A1Q9H2A2 487 aaPredicted RBP23.53■■□□□ 1.36
CLN3-205ENST00000359984 LAMB1P07942 1786 aa23.52■■□□□ 1.36
CLN3-205ENST00000359984 CLRN2A0PK11 232 aa23.52■■□□□ 1.36
CLN3-205ENST00000359984 K7ELQ4 463 aaPredicted RBP23.52■■□□□ 1.36
CLN3-205ENST00000359984 WNT10BO00744 389 aa23.52■■□□□ 1.36
CLN3-205ENST00000359984 DDNO94850 711 aaPredicted RBP23.52■■□□□ 1.36
CLN3-205ENST00000359984 SLC3A2P08195 630 aaKnown RBP23.52■■□□□ 1.36
CLN3-205ENST00000359984 MCM5P33992 734 aa23.52■■□□□ 1.36
CLN3-205ENST00000359984 MCM2P49736 904 aa23.52■■□□□ 1.36
CLN3-205ENST00000359984 NBPF9Q3BBW0 867 aa23.52■■□□□ 1.36
CLN3-205ENST00000359984 SPDYE2Q495Y8 402 aa23.52■■□□□ 1.36
CLN3-205ENST00000359984 RRP12Q5JTH9 1297 aaKnown RBP23.52■■□□□ 1.36
CLN3-205ENST00000359984 CHST3Q7LGC8 479 aa23.52■■□□□ 1.36
CLN3-205ENST00000359984 LRRC2Q9BYS8 371 aa23.52■■□□□ 1.36
CLN3-205ENST00000359984 KRT23Q9C075 422 aa23.52■■□□□ 1.36
CLN3-205ENST00000359984 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.52■■□□□ 1.36
CLN3-205ENST00000359984 PCP11498 1178 aaKnown RBP23.51■■□□□ 1.35
CLN3-205ENST00000359984 ANTXR2P58335 489 aa23.51■■□□□ 1.35
CLN3-205ENST00000359984 TCP10Q12799 353 aa23.51■■□□□ 1.35
CLN3-205ENST00000359984 RBM26Q5T8P6 1007 aaKnown RBP23.51■■□□□ 1.35
CLN3-205ENST00000359984 NOL8Q76FK4 1167 aaKnown RBP23.51■■□□□ 1.35
CLN3-205ENST00000359984 CYB5R4Q7L1T6 521 aa23.51■■□□□ 1.35
CLN3-205ENST00000359984 SAMD7Q7Z3H4 446 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms