RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 TBC1D10CQ8IV04 446 aa12.17□□□□□ -0.46
VIPAS39-201ENST00000327028 MAPKAPK5Q8IW41 473 aa12.17□□□□□ -0.46
VIPAS39-201ENST00000327028 ZBED3Q96IU2 234 aaPredicted RBP12.17□□□□□ -0.46
VIPAS39-201ENST00000327028 CASTP20810 708 aaKnown RBP12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 ZSWIM6Q9HCJ5 1215 aa12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 MCM9Q9NXL9 1143 aa12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 USP17L12C9JPN9 530 aa12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 USP17L21D6R901 530 aa12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 AMOTL1Q8IY63 956 aa12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 PRMT6Q96LA8 375 aaPredicted RBP12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 NEK1Q96PY6 1258 aa12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 IDI2Q9BXS1 227 aa12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 UPF3BQ9BZI7 483 aaKnown RBP12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 MYOZ2Q9NPC6 264 aa12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 ROBO3Q96MS0 1386 aa12.16□□□□□ -0.46
VIPAS39-201ENST00000327028 COL2A1P02458 1487 aaPredicted RBP12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 NPM3O75607 178 aaKnown RBP12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 CTDSPL2Q05D32 466 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 MICALL2Q8IY33 904 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 STAG1Q8WVM7 1258 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 CYP46A1Q9Y6A2 500 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 SRCAPQ6ZRS2 3230 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 SHTN1A0MZ66 631 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 MINDY4BA8MYZ0 360 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 ST18O60284 1047 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 HMGB1P09429 215 aaKnown RBP12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 NEK4P51957 841 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 BLOC1S2Q6QNY1 142 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 RUFY3Q7L099 469 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 SNX21Q969T3 373 aa12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 RNF41Q9H4P4 317 aaPredicted RBP12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 TDRD3Q9H7E2 651 aaKnown RBP12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 DDX4Q9NQI0 724 aaKnown RBP12.15□□□□□ -0.46
VIPAS39-201ENST00000327028 CYP2D7A0A087X1C5 515 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 CYP2D6P10635 497 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 RPS6KB1P23443 525 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 PICALMQ13492 652 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 SPDYE2Q495Y8 402 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 AKNAD1Q5T1N1 836 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 C12orf60Q5U649 245 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 OSBPL5Q9H0X9 879 aaPredicted RBP12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 TMOD2Q9NZR1 351 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 SAP30BPQ9UHR5 308 aaKnown RBP12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 CNOT7Q9UIV1 285 aaKnown RBP12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 PCP11498 1178 aaKnown RBP12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 NEDD4P46934 1319 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 NFIAQ12857 509 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 NCOA7Q8NI08 942 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 TTC14Q96N46 770 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 CNNM2Q9H8M5 875 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 GPRC5DQ9NZD1 345 aa12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 ZNF70Q9UC06 446 aaPredicted RBP12.14□□□□□ -0.47
VIPAS39-201ENST00000327028 SLC3A2P08195 630 aaKnown RBP12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 TRDNQ13061 729 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 FKBP1CQ5VVH2 108 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 RALYLQ86SE5 291 aaKnown RBP12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 MB21D2Q8IYB1 491 aaPredicted RBP12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 FAM198AQ9UFP1 575 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 TACC3Q9Y6A5 838 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 H7C1D1 291 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 WNT10BO00744 389 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 MYO1BO43795 1136 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 ENTPD3O75355 529 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 POLR3DP05423 398 aaPredicted RBP12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 FGRP09769 529 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 CPA1P15085 419 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 CACNB3P54284 484 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 COL9A3Q14050 684 aaPredicted RBP12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 BECN1Q14457 450 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 MFSD6Q6ZSS7 791 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 SIPA1L1O43166 1804 aa12.13□□□□□ -0.47
VIPAS39-201ENST00000327028 WDR19Q8NEZ3 1342 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 DDNO94850 711 aaPredicted RBP12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 CD2BP2O95400 341 aaKnown RBP12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 KIF4BQ2VIQ3 1234 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 DHX32Q7L7V1 743 aaKnown RBP12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 HSCBQ8IWL3 235 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 KRT23Q9C075 422 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 PDRG1Q9NUG6 133 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 ATRNL1Q5VV63 1379 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 CLRN2A0PK11 232 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 SMIM22K7EJ46 135 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 ORC4O43929 436 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 EVX2Q03828 476 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 TTC6Q86TZ1 520 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 TBC1D2Q9BYX2 928 aa12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 ALDH8A1Q9H2A2 487 aaPredicted RBP12.12□□□□□ -0.47
VIPAS39-201ENST00000327028 MCM2P49736 904 aa12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 NT5C2P49902 561 aa12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 PLCD1P51178 756 aa12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 EXOSC10Q01780 885 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 NBPF9Q3BBW0 867 aa12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 TBC1D10BQ4KMP7 808 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 L3MBTL3Q96JM7 780 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 DHX36Q9H2U1 1008 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 EGFRP00533 1210 aa12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 LMOD1P29536 600 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 MCM5P33992 734 aa12.11□□□□□ -0.47
VIPAS39-201ENST00000327028 PDE4BQ07343 736 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms