RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 NBPF3Q9H094 633 aa22.45■■□□□ 1.19
PDLIM3-202ENST00000284770 TDRD3Q9H7E2 651 aaKnown RBP22.45■■□□□ 1.19
PDLIM3-202ENST00000284770 ANAPC4Q9UJX5 808 aa22.45■■□□□ 1.19
PDLIM3-202ENST00000284770 TIAM2Q8IVF5 1701 aa22.45■■□□□ 1.18
PDLIM3-202ENST00000284770 MINDY4BA8MYZ0 360 aa22.45■■□□□ 1.18
PDLIM3-202ENST00000284770 STOX1Q6ZVD7 989 aa22.45■■□□□ 1.18
PDLIM3-202ENST00000284770 ZBED3Q96IU2 234 aaPredicted RBP22.45■■□□□ 1.18
PDLIM3-202ENST00000284770 NEK1Q96PY6 1258 aa22.44■■□□□ 1.18
PDLIM3-202ENST00000284770 IDI2Q9BXS1 227 aa22.44■■□□□ 1.18
PDLIM3-202ENST00000284770 ZSWIM6Q9HCJ5 1215 aa22.44■■□□□ 1.18
PDLIM3-202ENST00000284770 ZC3H4Q9UPT8 1303 aaKnown RBP22.44■■□□□ 1.18
PDLIM3-202ENST00000284770 CASTP20810 708 aaKnown RBP22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 SLC4A3P48751 1232 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 PICALMQ13492 652 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 TBC1D10CQ8IV04 446 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 IL27Q8NEV9 243 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 DDX4Q9NQI0 724 aaKnown RBP22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 CDK5RAP2Q96SN8 1893 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 CYP2D7A0A087X1C5 515 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 NPM3O75607 178 aaKnown RBP22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 DDNO94850 711 aaPredicted RBP22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 CD2BP2O95400 341 aaKnown RBP22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 NEK4P51957 841 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 CTDSPL2Q05D32 466 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 NFIAQ12857 509 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 C12orf60Q5U649 245 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 AMOTL1Q8IY63 956 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 UPF3BQ9BZI7 483 aaKnown RBP22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 GPRC5DQ9NZD1 345 aa22.43■■□□□ 1.18
PDLIM3-202ENST00000284770 LAMA4Q16363 1823 aa22.42■■□□□ 1.18
PDLIM3-202ENST00000284770 H7C1D1 291 aa22.42■■□□□ 1.18
PDLIM3-202ENST00000284770 WNT10BO00744 389 aa22.42■■□□□ 1.18
PDLIM3-202ENST00000284770 AKNAD1Q5T1N1 836 aa22.42■■□□□ 1.18
PDLIM3-202ENST00000284770 DPY19L2Q6NUT2 758 aa22.42■■□□□ 1.18
PDLIM3-202ENST00000284770 CYP46A1Q9Y6A2 500 aa22.42■■□□□ 1.18
PDLIM3-202ENST00000284770 BAZ2AQ9UIF9 1905 aaKnown RBP22.42■■□□□ 1.18
PDLIM3-202ENST00000284770 FOCADQ5VW36 1801 aa22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 MYO1BO43795 1136 aa22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 POLR3DP05423 398 aaPredicted RBP22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 HMGB1P09429 215 aaKnown RBP22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 CACNB3P54284 484 aa22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 SPDYE2Q495Y8 402 aa22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 BLOC1S2Q6QNY1 142 aa22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 RUFY3Q7L099 469 aa22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 STAG1Q8WVM7 1258 aa22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 TMOD2Q9NZR1 351 aa22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 ZNF70Q9UC06 446 aaPredicted RBP22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 SAP30BPQ9UHR5 308 aaKnown RBP22.41■■□□□ 1.18
PDLIM3-202ENST00000284770 CYP2D6P10635 497 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 NBPF9Q3BBW0 867 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 MFSD6Q6ZSS7 791 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 SAMD7Q7Z3H4 446 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 OSBPL5Q9H0X9 879 aaPredicted RBP22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 FAM198AQ9UFP1 575 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 ECM29Q5VYK3 1845 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 SMIM22K7EJ46 135 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 EGFRP00533 1210 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 CPA1P15085 419 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 TRDNQ13061 729 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 RBM26Q5T8P6 1007 aaKnown RBP22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 NCOA7Q8NI08 942 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 RNF41Q9H4P4 317 aaPredicted RBP22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 NAV1Q8NEY1 1877 aa22.4■■□□□ 1.18
PDLIM3-202ENST00000284770 CLRN2A0PK11 232 aa22.39■■□□□ 1.17
PDLIM3-202ENST00000284770 ST18O60284 1047 aa22.39■■□□□ 1.17
PDLIM3-202ENST00000284770 SLC3A2P08195 630 aaKnown RBP22.39■■□□□ 1.17
PDLIM3-202ENST00000284770 EVX2Q03828 476 aa22.39■■□□□ 1.17
PDLIM3-202ENST00000284770 COL9A3Q14050 684 aaPredicted RBP22.39■■□□□ 1.17
PDLIM3-202ENST00000284770 FKBP1CQ5VVH2 108 aa22.39■■□□□ 1.17
PDLIM3-202ENST00000284770 TACC3Q9Y6A5 838 aa22.39■■□□□ 1.17
PDLIM3-202ENST00000284770 DDX60LQ5H9U9 1706 aaKnown RBP22.39■■□□□ 1.17
PDLIM3-202ENST00000284770 ENTPD3O75355 529 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 FGRP09769 529 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 PCP11498 1178 aaKnown RBP22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 RPS6KB1P23443 525 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 PLCD1P51178 756 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 KIF4BQ2VIQ3 1234 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 SLC4A8Q2Y0W8 1093 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 TBC1D10BQ4KMP7 808 aaPredicted RBP22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 RALYLQ86SE5 291 aaKnown RBP22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 HSCBQ8IWL3 235 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 CNNM2Q9H8M5 875 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 INCENPQ9NQS7 918 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 DAXXQ9UER7 740 aaPredicted RBP22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 EPS15P42566 896 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 TCP10Q12799 353 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 DHX32Q7L7V1 743 aaKnown RBP22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 TTC6Q86TZ1 520 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 ZFPM1Q8IX07 1006 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 TTC14Q96N46 770 aa22.38■■□□□ 1.17
PDLIM3-202ENST00000284770 NEDD4P46934 1319 aa22.37■■□□□ 1.17
PDLIM3-202ENST00000284770 ROBO3Q96MS0 1386 aa22.37■■□□□ 1.17
PDLIM3-202ENST00000284770 LMOD1P29536 600 aaPredicted RBP22.37■■□□□ 1.17
PDLIM3-202ENST00000284770 STK11IPQ8N1F8 1099 aa22.37■■□□□ 1.17
PDLIM3-202ENST00000284770 KRT23Q9C075 422 aa22.37■■□□□ 1.17
PDLIM3-202ENST00000284770 DHX36Q9H2U1 1008 aaKnown RBP22.37■■□□□ 1.17
PDLIM3-202ENST00000284770 PDRG1Q9NUG6 133 aa22.37■■□□□ 1.17
PDLIM3-202ENST00000284770 LAMB1P07942 1786 aa22.36■■□□□ 1.17
PDLIM3-202ENST00000284770 MB21D2Q8IYB1 491 aaPredicted RBP22.36■■□□□ 1.17
PDLIM3-202ENST00000284770 L3MBTL3Q96JM7 780 aaPredicted RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms