RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 AATFQ9NY61 560 aaKnown RBP eCLIP17.9■□□□□ 0.46
SF3B4-201ENST00000271628 TMEM63CQ9P1W3 806 aa17.9■□□□□ 0.46
SF3B4-201ENST00000271628 CCDC69A6NI79 296 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 PPEF1O14829 653 aaPredicted RBP17.89■□□□□ 0.45
SF3B4-201ENST00000271628 ZBTB43O43298 467 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 NPR1P16066 1061 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 INCENPQ9NQS7 918 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 CFAP45Q9UL16 551 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 TNS1Q9HBL0 1735 aaKnown RBP17.89■□□□□ 0.45
SF3B4-201ENST00000271628 LDHCP07864 332 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 SRGNP10124 158 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 RESTQ13127 1097 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 RRP12Q5JTH9 1297 aaKnown RBP17.89■□□□□ 0.45
SF3B4-201ENST00000271628 ZSCAN30Q86W11 494 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 CERS3Q8IU89 383 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 TBC1D16Q8TBP0 767 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 RBSNQ9H1K0 784 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 SLC12A7Q9Y666 1083 aa17.89■□□□□ 0.45
SF3B4-201ENST00000271628 DUOX1Q9NRD9 1551 aa17.88■□□□□ 0.45
SF3B4-201ENST00000271628 FDPSP14324 419 aaKnown RBP17.88■□□□□ 0.45
SF3B4-201ENST00000271628 NKX2-3Q8TAU0 364 aa17.88■□□□□ 0.45
SF3B4-201ENST00000271628 RBM27Q9P2N5 1060 aaKnown RBP17.88■□□□□ 0.45
SF3B4-201ENST00000271628 ATP6V0A2Q9Y487 856 aa17.88■□□□□ 0.45
SF3B4-201ENST00000271628 TACC3Q9Y6A5 838 aa17.88■□□□□ 0.45
SF3B4-201ENST00000271628 LRRC37AA6NMS7 1700 aa17.88■□□□□ 0.45
SF3B4-201ENST00000271628 ANKRD31Q8N7Z5 1873 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 BAG3O95817 575 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 MMP10P09238 476 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 WTAPQ15007 396 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 ATL3Q6DD88 541 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 CTR9Q6PD62 1173 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 NAP1L5Q96NT1 182 aaPredicted RBP17.87■□□□□ 0.45
SF3B4-201ENST00000271628 ORC3Q9UBD5 711 aaPredicted RBP17.87■□□□□ 0.45
SF3B4-201ENST00000271628 SLC3A2P08195 630 aaKnown RBP17.87■□□□□ 0.45
SF3B4-201ENST00000271628 FGRP09769 529 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 RCAN1P53805 252 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 KLHL34Q8N239 644 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 PDLIM2Q96JY6 352 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 NOL10Q9BSC4 688 aaKnown RBP17.87■□□□□ 0.45
SF3B4-201ENST00000271628 UBAC1Q9BSL1 405 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 TMX4Q9H1E5 349 aaPredicted RBP17.87■□□□□ 0.45
SF3B4-201ENST00000271628 DCP1AQ9NPI6 582 aaPredicted RBP17.87■□□□□ 0.45
SF3B4-201ENST00000271628 ARPP21Q9UBL0 812 aaPredicted RBP17.87■□□□□ 0.45
SF3B4-201ENST00000271628 POLLQ9UGP5 575 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 JAG2Q9Y219 1238 aa17.87■□□□□ 0.45
SF3B4-201ENST00000271628 C6orf229H3BNL8 230 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 LETM1O95202 739 aaPredicted RBP17.86■□□□□ 0.45
SF3B4-201ENST00000271628 NT5C2P49902 561 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 SBK1Q52WX2 424 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 TBC1D22AQ8WUA7 517 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 SPATA32Q96LK8 384 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 USP17L12C9JPN9 530 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 USP17L21D6R901 530 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 ADD1P35611 737 aaKnown RBP17.86■□□□□ 0.45
SF3B4-201ENST00000271628 FAM173BQ6P4H8 233 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 SLC51AQ86UW1 340 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 MASTLQ96GX5 879 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 C8orf76Q96K31 380 aa17.86■□□□□ 0.45
SF3B4-201ENST00000271628 BAZ2AQ9UIF9 1905 aaKnown RBP17.85■□□□□ 0.45
SF3B4-201ENST00000271628 NID2Q14112 1375 aa17.85■□□□□ 0.45
SF3B4-201ENST00000271628 GOLGA8AA7E2F4 631 aa17.85■□□□□ 0.45
SF3B4-201ENST00000271628 PPP4CP60510 307 aa17.85■□□□□ 0.45
SF3B4-201ENST00000271628 TTC6Q86TZ1 520 aa17.85■□□□□ 0.45
SF3B4-201ENST00000271628 MICU3Q86XE3 530 aa17.85■□□□□ 0.45
SF3B4-201ENST00000271628 GPR101Q96P66 508 aaPredicted RBP17.85■□□□□ 0.45
SF3B4-201ENST00000271628 RGS17Q9UGC6 210 aaPredicted RBP17.85■□□□□ 0.45
SF3B4-201ENST00000271628 SYCE3A1L190 88 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 PPP2R5BQ15173 497 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 IQCA1Q86XH1 822 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 SLF2Q8IX21 1173 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 FBXO18Q8NFZ0 1043 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 LTBP1Q14766 1721 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 CCDC196A0A1B0GTZ2 297 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 CCDC183Q5T5S1 534 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 RAB11FIP4Q86YS3 637 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 STK11IPQ8N1F8 1099 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 ZNF396Q96N95 335 aaPredicted RBP17.84■□□□□ 0.45
SF3B4-201ENST00000271628 SENP2Q9HC62 589 aa17.84■□□□□ 0.45
SF3B4-201ENST00000271628 TFIP11Q9UBB9 837 aaKnown RBP17.84■□□□□ 0.45
SF3B4-201ENST00000271628 GOLGA6L4A6NEF3 574 aa17.83■□□□□ 0.45
SF3B4-201ENST00000271628 MSNP26038 577 aaKnown RBP17.83■□□□□ 0.45
SF3B4-201ENST00000271628 PDE4BQ07343 736 aa17.83■□□□□ 0.45
SF3B4-201ENST00000271628 LEO1Q8WVC0 666 aaPredicted RBP17.83■□□□□ 0.45
SF3B4-201ENST00000271628 ZKSCAN3Q9BRR0 538 aa17.83■□□□□ 0.45
SF3B4-201ENST00000271628 COA1Q9GZY4 146 aa17.83■□□□□ 0.45
SF3B4-201ENST00000271628 ORC4O43929 436 aa17.83■□□□□ 0.44
SF3B4-201ENST00000271628 CDC27P30260 824 aa17.83■□□□□ 0.44
SF3B4-201ENST00000271628 IARSP41252 1262 aaKnown RBP17.83■□□□□ 0.44
SF3B4-201ENST00000271628 USP5P45974 858 aa17.83■□□□□ 0.44
SF3B4-201ENST00000271628 SLC15A2Q16348 729 aa17.83■□□□□ 0.44
SF3B4-201ENST00000271628 POTEAQ6S8J7 498 aa17.83■□□□□ 0.44
SF3B4-201ENST00000271628 MPNDQ8N594 471 aa17.83■□□□□ 0.44
SF3B4-201ENST00000271628 ZC3H12CQ9C0D7 883 aaKnown RBP17.83■□□□□ 0.44
SF3B4-201ENST00000271628 MROH7-TTC4A0A0A0MT08 1334 aa17.82■□□□□ 0.44
SF3B4-201ENST00000271628 TNKSO95271 1327 aa17.82■□□□□ 0.44
SF3B4-201ENST00000271628 FAM205AQ6ZU69 1335 aa17.82■□□□□ 0.44
SF3B4-201ENST00000271628 PPFIA3O75145 1194 aa17.82■□□□□ 0.44
SF3B4-201ENST00000271628 RXRAP19793 462 aa17.82■□□□□ 0.44
SF3B4-201ENST00000271628 NTRK3Q16288 839 aa17.82■□□□□ 0.44
SF3B4-201ENST00000271628 AMOTL1Q8IY63 956 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms