RNA–Protein interactions for RNA: ENSMUST00000052648.8

Ccdc28a-201, Transcript of Coiled-coil domain-containing 28A, mousemouse

TSL 1 (best) BASIC

Gene Ccdc28a, Length 2,255 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28a-201ENSMUST00000052648 Cyp3a59D3Z2W7 503 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Slc27a3O88561 667 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Abl1P00520 1123 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Tnni2P13412 182 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Eef2P58252 858 aaKnown RBP10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Kif20aP97329 887 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Gjb2Q00977 226 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Fam178bQ24JP3 464 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Klhdc9Q3USL1 350 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Rnf41Q8BH75 317 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Atad2Q8CDM1 1040 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Shtn1Q8K2Q9 631 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Lman1lQ8VCD3 505 aa10.5□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Pcdh15Q99PJ1 1943 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 SisF8VQM5 1818 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Scn10aQ6QIY3 1958 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Prss51A0A286YDY8 319 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Phactr2B1AVP0 632 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Flvcr1B2RXV4 560 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Fam186bD3Z420 943 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Oog3Q3UWY1 500 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Fxr1Q61584 677 aaKnown RBP10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Sp8Q8BMJ8 486 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Pcdhb22Q91XZ8 794 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Bap1Q99PU7 728 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Slx4ipQ9D7Y9 413 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Med23Q80YQ2 1367 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Ano3A2AHL1 981 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Vcam1P29533 739 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 LeprP48356 1162 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Pald1P70261 859 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Cnnm2Q3TWN3 875 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Ccdc174Q3U155 467 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Tti2Q8BGV4 512 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Q9D9S1 216 aa10.49□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 1700003F12RikA2AKE5 210 aa10.48□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Znf667Q2TL60 609 aa10.48□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Stk11ipQ3TAA7 1072 aa10.48□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Tmc4Q7TQ65 694 aa10.48□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Tnpo1Q8BFY9 898 aaKnown RBP10.48□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Htatsf1Q8BGC0 757 aa10.48□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Rps6kb1Q8BSK8 525 aa10.48□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Gbp7Q91Z40 638 aa10.48□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Efcc1Q9JJF6 558 aa10.48□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Rgs12Q8CGE9 1381 aa10.48□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Sptbn5F6UCX4 1208 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Vmn2r68L7N2B3 851 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Il7P10168 154 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Irf6P97431 467 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 VrtnQ3SYK4 740 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Cep131Q62036 1060 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Fam170aQ66LM6 333 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Scaf8Q6DID3 1268 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Gm21985Q6P6P5 1106 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 PaoxQ8C0L6 504 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Dynll2Q9D0M5 89 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Gm29094F6Q785 221 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Cyp2d34L7N463 504 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 ArxO35085 564 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 PcQ05920 1178 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Utp18Q5SSI6 552 aaKnown RBP10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Slc44a1Q6X893 653 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Ints3Q7TPD0 1041 aaKnown RBP10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Otop3Q80UF9 577 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Tceanc2Q8R2M0 207 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Odf2lQ9D478 642 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Sil1Q9EPK6 465 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 TicrrQ8BQ33 1889 aa10.47□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Ythdc1E9Q5K9 736 aaKnown RBP10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Lipo1J3QME6 396 aa10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Slc1a4O35874 532 aa10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 CenpbP27790 599 aa10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 EvcP57680 1005 aa10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Aak1Q3UHJ0 959 aa10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Sez6lQ6P1D5 963 aa10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Ppp1r9bQ6R891 817 aaKnown RBP10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Tmem39bQ810L4 492 aa10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Cchcr1Q8K2I2 770 aa10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Atxn7Q8R4I1 867 aa10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Ubxn2aQ99KJ0 258 aa10.46□□□□□ -0.73
Ccdc28a-201ENSMUST00000052648 Col2a1P28481 1487 aa10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Exosc10P56960 887 aaKnown RBP10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Klrg2Q3UM83 387 aa10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Tbc1d9bQ5SVR0 1263 aa10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Adgre1Q61549 931 aa10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 KhnynQ80U38 671 aa10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Ncaph2Q8BSP2 607 aa10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Cdk8Q8R3L8 464 aa10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Ndufv1Q91YT0 464 aa10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Cyp27a1Q9DBG1 533 aa10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Tcof1O08784 1320 aaKnown RBP10.46□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Smarce1O54941 411 aaKnown RBP10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 F2rP30558 430 aa10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Cep55Q8BT07 462 aa10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Fsd2Q8BZ52 692 aa10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Mei1Q9D4I2 1268 aa10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Ccdc7Q9D541 371 aa10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Gm36210A0A1B0GS00 229 aa10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Pkp1P97350 728 aaKnown RBP10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Tmprss11eQ5S248 423 aa10.45□□□□□ -0.74
Retrieved 100 of 22,080 RNA–protein pairs in 21.1 ms