RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Rsph3bQ9DA80 389 aa18.43■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Sem1P60897 70 aa18.43■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Angptl3Q9R182 455 aa18.43■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Exoc3l2D3YUP5 789 aa18.43■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Drc1Q3USS3 753 aa18.43■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Duxf3A0A0N4SV92 674 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Fmn2Q9JL04 1578 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Skap1Q3UUV5 355 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Ankrd6Q69ZU8 712 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Dnajc8Q6NZB0 253 aaKnown RBP18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Rsad2Q8CBB9 362 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Ythdc2B2RR83 1445 aaKnown RBP18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Ppp1r12cQ3UMT1 782 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Cd2bp2Q9CWK3 342 aaKnown RBP18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Samd15F6XZJ7 620 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 YwhaeP62259 255 aaKnown RBP18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 ErmnQ5EBJ4 281 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Tbc1d2B1AVH7 922 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Trim37Q6PCX9 961 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Bst2Q8R2Q8 172 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 PtprkP35822 1457 aa18.42■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Plb1Q3TTY0 1478 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Terf1P70371 421 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Rexo1Q7TT28 1213 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Krt222Q8CCX5 294 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Uba5Q8VE47 403 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Ndufa8Q9DCJ5 172 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Mcm10Q0VBD2 885 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Q8R1Y2 203 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 IkbkgO88522 412 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 EmbP21995 330 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Sparcl1P70663 650 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Utp18Q5SSI6 552 aaKnown RBP18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Sde2Q8K1J5 448 aaKnown RBP18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Slc5a4bQ91ZP4 660 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Atp12aQ9Z1W8 1035 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Catsper2A2ARP9 588 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 HdxQ14B70 692 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Rnf40Q3U319 1001 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Abcb4P21440 1276 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Farp2Q91VS8 1065 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Myh10Q61879 1976 aaKnown RBP18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Ppfia4B8QI36 1187 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Dmrt2Q8BG36 561 aa18.41■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Rilpl1Q9JJC6 406 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Serpini1O35684 410 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Taf12Q8VE65 161 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Basp1Q91XV3 226 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Zbtb3Q91X45 518 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 B4galnt4Q766D5 1034 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Pex1Q5BL07 1284 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Spata2Q8K004 515 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Bloc1s4Q8VED2 215 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Prex2Q3LAC4 1598 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 PsdQ5DTT2 1024 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Rps6kb1Q8BSK8 525 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Nsd3Q6P2L6 1439 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Spc25Q3UA16 226 aa18.4■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 GabpaQ00422 454 aa18.39■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Setd1aE9PYH6 1716 aa18.39■□□□□ 0.54
Ccdc88a-201ENSMUST00000040182 Itsn2Q9Z0R6 1659 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Btn2a2A4QPC6 514 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Pdzrn3Q69ZS0 1063 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Cetn3O35648 167 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Mx1P09922 631 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Cabs1Q8C633 391 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Fam228aQ8CDW1 299 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 FanclQ9CR14 375 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 CacybpQ9CXW3 229 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Bag2Q91YN9 210 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Col4a3bpQ9EQG9 624 aa18.39■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Gzf1Q4VBD9 706 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Slc17a8Q8BFU8 601 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Aox4Q3TYQ9 1336 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Lekr1B2RVN1 116 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Rassf10Q8BL43 508 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Iws1Q8C1D8 766 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Ccdc70Q9D9B0 223 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Atp10dQ8K2X1 1416 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Ankrd50F7BE84 1390 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Ncf2O70145 525 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Acot11Q8VHQ9 594 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Tpd52l2Q9CYZ2 220 aaKnown RBP18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Frat1P70339 274 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Pde1bQ01065 535 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Lmbr1lQ9D1E5 489 aa18.38■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Abcc6Q9R1S7 1498 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Ubn2Q80WC1 1314 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Slc51bQ80WK2 128 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Pcdhb22Q91XZ8 794 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Tekt2Q922G7 430 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 MycbpapQ5SUV2 932 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Elf2Q9JHC9 593 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Zscan25B2RX31 543 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Vgll3P85442 326 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 RestQ8VIG1 1082 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Rps6ka1P18653 724 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Ccdc125Q5U465 500 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 2310002L09RikQ9D7L5 217 aa18.37■□□□□ 0.53
Ccdc88a-201ENSMUST00000040182 Eif4g3Q80XI3 1579 aaKnown RBP18.37■□□□□ 0.53
Retrieved 100 of 22,080 RNA–protein pairs in 133.5 ms