RNA–Protein interactions for RNA: YPL104W

MSD1, Transcript of Mitochondrial aspartyl-tRNA synthetase, yeastyeast

Gene MSD1, Length 1,977 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSD1YPL104W SSP1P38871 571 aa5.43□□□□□ -1.54
MSD1YPL104W RIM101P33400 625 aa5.42□□□□□ -1.54
MSD1YPL104W TY1B-JR2P47100 1755 aaKnown RBP5.42□□□□□ -1.54
MSD1YPL104W TY1B-ER2Q03619 1755 aa5.42□□□□□ -1.54
MSD1YPL104W TY1B-MR1Q04214 1755 aa5.42□□□□□ -1.54
MSD1YPL104W TY1B-MR2Q04670 1755 aaKnown RBP5.42□□□□□ -1.54
MSD1YPL104W TY1B-LR1Q12088 1755 aaKnown RBP5.42□□□□□ -1.54
MSD1YPL104W TY1B-NL1Q12112 1755 aa5.42□□□□□ -1.54
MSD1YPL104W TY1B-GR1Q12141 1755 aa5.42□□□□□ -1.54
MSD1YPL104W TY1B-BLQ12490 1755 aa5.42□□□□□ -1.54
MSD1YPL104W NTE1Q04958 1679 aa5.41□□□□□ -1.54
MSD1YPL104W SAS10Q12136 610 aaPredicted RBP5.41□□□□□ -1.54
MSD1YPL104W PDR15Q04182 1529 aaKnown RBP5.41□□□□□ -1.54
MSD1YPL104W TSC11P40061 1430 aa5.41□□□□□ -1.54
MSD1YPL104W ULS1Q08562 1619 aa5.4□□□□□ -1.54
MSD1YPL104W RPA190P10964 1664 aaKnown RBP5.4□□□□□ -1.54
MSD1YPL104W STH1P32597 1359 aa5.39□□□□□ -1.55
MSD1YPL104W DNF1P32660 1571 aa5.39□□□□□ -1.55
MSD1YPL104W TRM732Q03496 1420 aa5.38□□□□□ -1.55
MSD1YPL104W RPO21P04050 1733 aaKnown RBP5.37□□□□□ -1.55
MSD1YPL104W SPT21P35209 758 aa5.37□□□□□ -1.55
MSD1YPL104W PRI1P10363 409 aa5.35□□□□□ -1.55
MSD1YPL104W SNT2P53127 1403 aa5.34□□□□□ -1.55
MSD1YPL104W YAH1Q12184 172 aaKnown RBP5.33□□□□□ -1.56
MSD1YPL104W GEA1P47102 1408 aaPredicted RBP5.33□□□□□ -1.56
MSD1YPL104W IRC20Q06554 1556 aa5.31□□□□□ -1.56
MSD1YPL104W GEA2P39993 1459 aaKnown RBP5.31□□□□□ -1.56
MSD1YPL104W NUP159P40477 1460 aa5.31□□□□□ -1.56
MSD1YPL104W NUP170P38181 1502 aa5.31□□□□□ -1.56
MSD1YPL104W TY3B-GQ99315 1547 aa5.31□□□□□ -1.56
MSD1YPL104W YBT1P32386 1661 aa5.3□□□□□ -1.56
MSD1YPL104W LEU3P08638 886 aa5.3□□□□□ -1.56
MSD1YPL104W OXP1P28273 1286 aa5.29□□□□□ -1.56
MSD1YPL104W MET5P47169 1442 aa5.29□□□□□ -1.56
MSD1YPL104W YRF1-1P0CX20 1796 aa5.28□□□□□ -1.56
MSD1YPL104W YRF1-5P0CX21 1796 aa5.28□□□□□ -1.56
MSD1YPL104W YRF1-8P0CX22 1796 aa5.28□□□□□ -1.56
MSD1YPL104W IFH1P39520 1085 aa5.28□□□□□ -1.56
MSD1YPL104W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.28□□□□□ -1.56not detected
MSD1YPL104W IKI3Q06706 1349 aaKnown RBP5.28□□□□□ -1.56
MSD1YPL104W SPO14P36126 1683 aa5.25□□□□□ -1.57
MSD1YPL104W PDR12Q02785 1511 aa5.25□□□□□ -1.57
MSD1YPL104W VPS15P22219 1454 aa5.25□□□□□ -1.57
MSD1YPL104W CAT8P39113 1433 aa5.25□□□□□ -1.57
MSD1YPL104W GDB1Q06625 1536 aa5.25□□□□□ -1.57
MSD1YPL104W RTT106P40161 455 aa5.24□□□□□ -1.57
MSD1YPL104W YLR271WQ06152 274 aa5.24□□□□□ -1.57
MSD1YPL104W PDR10P51533 1564 aa5.23□□□□□ -1.57
MSD1YPL104W YIL055CP40523 627 aaKnown RBP5.22□□□□□ -1.57
MSD1YPL104W ARO1P08566 1588 aaKnown RBP5.22□□□□□ -1.57
MSD1YPL104W AAD16Q02895 342 aa5.21□□□□□ -1.58
MSD1YPL104W SSM4P40318 1319 aa5.2□□□□□ -1.58
MSD1YPL104W NUP157P40064 1391 aaKnown RBP5.18□□□□□ -1.58
MSD1YPL104W DMA2P53924 522 aa5.18□□□□□ -1.58
MSD1YPL104W MET10P39692 1035 aa5.18□□□□□ -1.58
MSD1YPL104W MGA2P40578 1113 aa5.17□□□□□ -1.58
MSD1YPL104W LTE1P07866 1435 aa5.17□□□□□ -1.58
MSD1YPL104W YCK3P39962 524 aa5.16□□□□□ -1.58
MSD1YPL104W SRB8P25648 1427 aa5.16□□□□□ -1.58
MSD1YPL104W TSR3Q12094 313 aaKnown RBP5.16□□□□□ -1.58
MSD1YPL104W BUD3P25558 1636 aa5.16□□□□□ -1.58
MSD1YPL104W IQG1Q12280 1495 aa5.16□□□□□ -1.58
MSD1YPL104W HAA1Q12753 694 aaKnown RBP5.14□□□□□ -1.59
MSD1YPL104W DOP1Q03921 1698 aa5.14□□□□□ -1.59
MSD1YPL104W RPN1P38764 993 aaKnown RBP5.13□□□□□ -1.59
MSD1YPL104W GCN2P15442 1659 aa5.13□□□□□ -1.59
MSD1YPL104W CHC1P22137 1653 aaKnown RBP5.13□□□□□ -1.59
MSD1YPL104W RSM7P47150 247 aa5.12□□□□□ -1.59
MSD1YPL104W CKB1P43639 278 aa5.11□□□□□ -1.59
MSD1YPL104W CST9Q06032 482 aa5.11□□□□□ -1.59
MSD1YPL104W YSP2Q06681 1438 aa5.11□□□□□ -1.59
MSD1YPL104W TRM3Q07527 1436 aa5.11□□□□□ -1.59
MSD1YPL104W MMS1Q06211 1407 aa5.11□□□□□ -1.59
MSD1YPL104W YKR023WP36119 530 aaKnown RBP5.1□□□□□ -1.59
MSD1YPL104W DRS2P39524 1355 aa5.09□□□□□ -1.59
MSD1YPL104W SEC7P11075 2009 aaKnown RBP5.09□□□□□ -1.59
MSD1YPL104W YOR093CQ12275 1648 aa5.08□□□□□ -1.6
MSD1YPL104W BNI1P41832 1953 aa5.07□□□□□ -1.6
MSD1YPL104W BNR1P40450 1375 aa5.06□□□□□ -1.6
MSD1YPL104W SPB4P25808 606 aaPredicted RBP5.06□□□□□ -1.6
MSD1YPL104W BUD21Q08492 214 aaPredicted RBP5.05□□□□□ -1.6
MSD1YPL104W PDR5P33302 1511 aaKnown RBP5.05□□□□□ -1.6
MSD1YPL104W ABP1P15891 592 aaKnown RBP5.04□□□□□ -1.6
MSD1YPL104W DNF2Q12675 1612 aa5.03□□□□□ -1.6
MSD1YPL104W HOP09932 586 aa5.03□□□□□ -1.6
MSD1YPL104W VMR1P38735 1592 aa5.02□□□□□ -1.61
MSD1YPL104W NUP188P52593 1655 aaKnown RBP5.02□□□□□ -1.61
MSD1YPL104W PSD2P53037 1138 aaKnown RBP5.02□□□□□ -1.61
MSD1YPL104W RLF2Q12495 606 aa5.02□□□□□ -1.61
MSD1YPL104W AI2P03876 854 aa5□□□□□ -1.61
MSD1YPL104W SET1P38827 1080 aaKnown RBP5□□□□□ -1.61
MSD1YPL104W VPS70P47161 811 aa5□□□□□ -1.61
MSD1YPL104W ITT1Q04638 464 aa5□□□□□ -1.61
MSD1YPL104W IML1P47170 1584 aa5□□□□□ -1.61
MSD1YPL104W DCD1P06773 312 aa4.99□□□□□ -1.61
MSD1YPL104W TFC8Q12308 588 aa4.99□□□□□ -1.61
MSD1YPL104W RAM2P29703 316 aa4.98□□□□□ -1.61
MSD1YPL104W NOP7P53261 605 aaKnown RBP4.98□□□□□ -1.61
MSD1YPL104W PAF1P38351 445 aa4.96□□□□□ -1.62
MSD1YPL104W YPR148CQ06523 435 aa4.95□□□□□ -1.62
Retrieved 100 of 5,963 RNA–protein pairs in 46.8 ms