RNA–Protein interactions for RNA: YLR378C

SEC61, Transcript of Conserved ER protein translocation channel, yeastyeast

Gene SEC61, Length 1,443 nt, Biotype protein coding, Subcellular localisation Mitochondria, Peroxisome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC61YLR378C PDR15Q04182 1529 aaKnown RBP13.62□□□□□ -0.23
SEC61YLR378C IFH1P39520 1085 aa13.6□□□□□ -0.23
SEC61YLR378C SNT2P53127 1403 aa13.57□□□□□ -0.24
SEC61YLR378C ULS1Q08562 1619 aa13.56□□□□□ -0.24
SEC61YLR378C RTT106P40161 455 aa13.56□□□□□ -0.24
SEC61YLR378C NTE1Q04958 1679 aa13.55□□□□□ -0.24
SEC61YLR378C RPO21P04050 1733 aaKnown RBP13.52□□□□□ -0.25
SEC61YLR378C GEA1P47102 1408 aaPredicted RBP13.51□□□□□ -0.25
SEC61YLR378C NUP159P40477 1460 aa13.5□□□□□ -0.25
SEC61YLR378C MET5P47169 1442 aa13.49□□□□□ -0.25
SEC61YLR378C GEA2P39993 1459 aaKnown RBP13.47□□□□□ -0.25
SEC61YLR378C IKI3Q06706 1349 aaKnown RBP13.44□□□□□ -0.26
SEC61YLR378C MET10P39692 1035 aa13.39□□□□□ -0.27
SEC61YLR378C VPS15P22219 1454 aa13.36□□□□□ -0.27
SEC61YLR378C IRC20Q06554 1556 aa13.36□□□□□ -0.27
SEC61YLR378C YRF1-1P0CX20 1796 aa13.36□□□□□ -0.27
SEC61YLR378C YRF1-5P0CX21 1796 aa13.36□□□□□ -0.27
SEC61YLR378C YRF1-8P0CX22 1796 aa13.36□□□□□ -0.27
SEC61YLR378C CAT8P39113 1433 aa13.35□□□□□ -0.27
SEC61YLR378C TY3B-GQ99315 1547 aa13.32□□□□□ -0.28
SEC61YLR378C YBT1P32386 1661 aa13.29□□□□□ -0.28
SEC61YLR378C PDR12Q02785 1511 aa13.29□□□□□ -0.28
SEC61YLR378C NUP170P38181 1502 aa13.28□□□□□ -0.28
SEC61YLR378C SPO14P36126 1683 aa13.26□□□□□ -0.29
SEC61YLR378C NUP157P40064 1391 aaKnown RBP13.23□□□□□ -0.29
SEC61YLR378C GDB1Q06625 1536 aa13.23□□□□□ -0.29
SEC61YLR378C PDR10P51533 1564 aa13.22□□□□□ -0.29
SEC61YLR378C SSM4P40318 1319 aa13.21□□□□□ -0.3
SEC61YLR378C LTE1P07866 1435 aa13.19□□□□□ -0.3
SEC61YLR378C CKB1P43639 278 aa13.19□□□□□ -0.3
SEC61YLR378C SRB8P25648 1427 aa13.15□□□□□ -0.31
SEC61YLR378C ARO1P08566 1588 aaKnown RBP13.13□□□□□ -0.31
SEC61YLR378C BUD3P25558 1636 aa13.11□□□□□ -0.31
SEC61YLR378C IQG1Q12280 1495 aa13.11□□□□□ -0.31
SEC61YLR378C DRS2P39524 1355 aa13.04□□□□□ -0.32
SEC61YLR378C BUD21Q08492 214 aaPredicted RBP13.04□□□□□ -0.32
SEC61YLR378C MMS1Q06211 1407 aa13.03□□□□□ -0.32
SEC61YLR378C YSP2Q06681 1438 aa13.02□□□□□ -0.33
SEC61YLR378C BNR1P40450 1375 aa12.96□□□□□ -0.33
SEC61YLR378C SEC7P11075 2009 aaKnown RBP12.96□□□□□ -0.34
SEC61YLR378C TRM3Q07527 1436 aa12.95□□□□□ -0.34
SEC61YLR378C DOP1Q03921 1698 aa12.94□□□□□ -0.34
SEC61YLR378C ITT1Q04638 464 aa12.92□□□□□ -0.34
SEC61YLR378C GCN2P15442 1659 aa12.91□□□□□ -0.34
SEC61YLR378C BNI1P41832 1953 aa12.88□□□□□ -0.35
SEC61YLR378C CHC1P22137 1653 aaKnown RBP12.84□□□□□ -0.35
SEC61YLR378C PAF1P38351 445 aa12.79□□□□□ -0.36
SEC61YLR378C NOP7P53261 605 aaKnown RBP12.78□□□□□ -0.36
SEC61YLR378C URN1Q06525 465 aaKnown RBP12.72□□□□□ -0.37
SEC61YLR378C YOR093CQ12275 1648 aa12.72□□□□□ -0.37
SEC61YLR378C PDR5P33302 1511 aaKnown RBP12.69□□□□□ -0.38
SEC61YLR378C BFR2Q06631 534 aaKnown RBP12.68□□□□□ -0.38
SEC61YLR378C NUP188P52593 1655 aaKnown RBP12.67□□□□□ -0.38
SEC61YLR378C DNF2Q12675 1612 aa12.66□□□□□ -0.38
SEC61YLR378C VMR1P38735 1592 aa12.62□□□□□ -0.39
SEC61YLR378C POL5P39985 1022 aaKnown RBP12.62□□□□□ -0.39
SEC61YLR378C IML1P47170 1584 aa12.61□□□□□ -0.39
SEC61YLR378C YAP3P38749 330 aa12.59□□□□□ -0.39
SEC61YLR378C RAV1P47104 1357 aa12.59□□□□□ -0.39
SEC61YLR378C IPL1P38991 367 aa12.58□□□□□ -0.4
SEC61YLR378C RTC1Q08281 1341 aa12.55□□□□□ -0.4
SEC61YLR378C PDR11P40550 1411 aa12.54□□□□□ -0.4
SEC61YLR378C ABP1P15891 592 aaKnown RBP12.53□□□□□ -0.4
SEC61YLR378C TYS1P36421 394 aaKnown RBP12.52□□□□□ -0.41
SEC61YLR378C ESL2P36168 1195 aa12.46□□□□□ -0.41
SEC61YLR378C TAF5P38129 798 aa12.45□□□□□ -0.42
SEC61YLR378C DNF3Q12674 1656 aa12.42□□□□□ -0.42
SEC61YLR378C HAP1P0CE41 1502 aa12.41□□□□□ -0.42
SEC61YLR378C ORC1P54784 914 aaPredicted RBP12.4□□□□□ -0.42
SEC61YLR378C SCT1P32784 759 aa12.39□□□□□ -0.43
SEC61YLR378C TY3B-IQ7LHG5 1498 aaKnown RBP12.37□□□□□ -0.43
SEC61YLR378C NUP192P47054 1683 aa12.36□□□□□ -0.43
SEC61YLR378C ALD4P46367 519 aaKnown RBP12.35□□□□□ -0.43
SEC61YLR378C NAP1P25293 417 aaKnown RBP12.34□□□□□ -0.43
SEC61YLR378C MAK10Q02197 733 aa12.34□□□□□ -0.43
SEC61YLR378C KIP3P53086 805 aaKnown RBP12.33□□□□□ -0.44
SEC61YLR378C MRX12P47084 519 aa12.31□□□□□ -0.44
SEC61YLR378C MHP1P43638 1398 aa12.3□□□□□ -0.44
SEC61YLR378C SEC3P33332 1336 aaKnown RBP12.3□□□□□ -0.44
SEC61YLR378C BCK1Q01389 1478 aa12.29□□□□□ -0.44
SEC61YLR378C RAD9P14737 1309 aa12.29□□□□□ -0.44
SEC61YLR378C SPE2P21182 396 aa12.27□□□□□ -0.45
SEC61YLR378C TAF8Q03750 510 aa12.27□□□□□ -0.45
SEC61YLR378C CAB1Q04430 367 aa12.27□□□□□ -0.45
SEC61YLR378C YLR419WQ06698 1435 aaKnown RBP12.26□□□□□ -0.45
SEC61YLR378C RIA1P53893 1110 aa12.21□□□□□ -0.45
SEC61YLR378C KRE5P22023 1365 aa12.2□□□□□ -0.46
SEC61YLR378C PDS5Q04264 1277 aa12.2□□□□□ -0.46
SEC61YLR378C SPT7P35177 1332 aa12.18□□□□□ -0.46
SEC61YLR378C CFT1Q06632 1357 aaKnown RBP12.16□□□□□ -0.46
SEC61YLR378C TY1B-NL2Q99337 1749 aaKnown RBP12.16□□□□□ -0.46
SEC61YLR378C CHZ1P40019 153 aaPredicted RBP12.15□□□□□ -0.46
SEC61YLR378C MIF2P35201 549 aa12.14□□□□□ -0.47
SEC61YLR378C ENP1P38333 483 aaKnown RBP12.14□□□□□ -0.47
SEC61YLR378C USO1P25386 1790 aa12.13□□□□□ -0.47
SEC61YLR378C PSD2P53037 1138 aaKnown RBP12.1□□□□□ -0.47
SEC61YLR378C YMR196WQ04336 1088 aa12.1□□□□□ -0.47
SEC61YLR378C MLP1Q02455 1875 aaKnown RBP12.09□□□□□ -0.47
SEC61YLR378C YNR029CP53729 429 aaKnown RBP12.09□□□□□ -0.47
SEC61YLR378C LEU3P08638 886 aa12.07□□□□□ -0.48
Retrieved 100 of 5,963 RNA–protein pairs in 9.6 ms