RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C SAS10Q12136 610 aaPredicted RBP16.39■□□□□ 0.21
SPT8YLR055C STH1P32597 1359 aa16.35■□□□□ 0.21
SPT8YLR055C YRF1-1P0CX20 1796 aa16.35■□□□□ 0.21
SPT8YLR055C YRF1-5P0CX21 1796 aa16.35■□□□□ 0.21
SPT8YLR055C YRF1-8P0CX22 1796 aa16.35■□□□□ 0.21
SPT8YLR055C MLP2P40457 1679 aa16.34■□□□□ 0.21
SPT8YLR055C SNT2P53127 1403 aa16.28■□□□□ 0.2
SPT8YLR055C LTE1P07866 1435 aa16.27■□□□□ 0.2
SPT8YLR055C PDR15Q04182 1529 aaKnown RBP16.24■□□□□ 0.19
SPT8YLR055C ULS1Q08562 1619 aa16.24■□□□□ 0.19
SPT8YLR055C VPS15P22219 1454 aa16.22■□□□□ 0.19
SPT8YLR055C TAF7Q05021 590 aa16.2■□□□□ 0.18
SPT8YLR055C RTT106P40161 455 aa16.19■□□□□ 0.18
SPT8YLR055C GEA2P39993 1459 aaKnown RBP16.18■□□□□ 0.18
SPT8YLR055C MET10P39692 1035 aa16.1■□□□□ 0.17
SPT8YLR055C IFH1P39520 1085 aa16.09■□□□□ 0.17
SPT8YLR055C SPO14P36126 1683 aa16.08■□□□□ 0.16
SPT8YLR055C BNI1P41832 1953 aa16.04■□□□□ 0.16
SPT8YLR055C IRC20Q06554 1556 aa16.04■□□□□ 0.16
SPT8YLR055C PDR12Q02785 1511 aa16.03■□□□□ 0.16
SPT8YLR055C GEA1P47102 1408 aaPredicted RBP16■□□□□ 0.15
SPT8YLR055C ITT1Q04638 464 aa15.99■□□□□ 0.15
SPT8YLR055C DRS2P39524 1355 aa15.98■□□□□ 0.15
SPT8YLR055C GDB1Q06625 1536 aa15.98■□□□□ 0.15
SPT8YLR055C NUP170P38181 1502 aa15.96■□□□□ 0.15
SPT8YLR055C NUP157P40064 1391 aaKnown RBP15.93■□□□□ 0.14
SPT8YLR055C TY3B-GQ99315 1547 aa15.89■□□□□ 0.13
SPT8YLR055C PDR10P51533 1564 aa15.89■□□□□ 0.13
SPT8YLR055C YBT1P32386 1661 aa15.88■□□□□ 0.13
SPT8YLR055C IQG1Q12280 1495 aa15.85■□□□□ 0.13
SPT8YLR055C CAT8P39113 1433 aa15.85■□□□□ 0.13
SPT8YLR055C MMS1Q06211 1407 aa15.83■□□□□ 0.12
SPT8YLR055C BUD3P25558 1636 aa15.79■□□□□ 0.12
SPT8YLR055C DOP1Q03921 1698 aa15.76■□□□□ 0.11
SPT8YLR055C ARO1P08566 1588 aaKnown RBP15.73■□□□□ 0.11
SPT8YLR055C TRM3Q07527 1436 aa15.71■□□□□ 0.11
SPT8YLR055C CKB1P43639 278 aa15.69■□□□□ 0.1
SPT8YLR055C DNF2Q12675 1612 aa15.64■□□□□ 0.09
SPT8YLR055C IKI3Q06706 1349 aaKnown RBP15.62■□□□□ 0.09
SPT8YLR055C CHC1P22137 1653 aaKnown RBP15.62■□□□□ 0.09
SPT8YLR055C SEC7P11075 2009 aaKnown RBP15.61■□□□□ 0.09
SPT8YLR055C YSP2Q06681 1438 aa15.6■□□□□ 0.09
SPT8YLR055C ABP1P15891 592 aaKnown RBP15.58■□□□□ 0.08
SPT8YLR055C SRB8P25648 1427 aa15.56■□□□□ 0.08
SPT8YLR055C BNR1P40450 1375 aa15.53■□□□□ 0.08
SPT8YLR055C NSR1P27476 414 aaKnown RBP RIP-Chip data15.46■□□□□ 0.07 RIP-Chip
SPT8YLR055C SSM4P40318 1319 aa15.43■□□□□ 0.06
SPT8YLR055C BUD21Q08492 214 aaPredicted RBP15.4■□□□□ 0.06
SPT8YLR055C MIF2P35201 549 aa15.4■□□□□ 0.06
SPT8YLR055C YOR093CQ12275 1648 aa15.38■□□□□ 0.05
SPT8YLR055C NOP2P40991 618 aaKnown RBP15.38■□□□□ 0.05
SPT8YLR055C YAP3P38749 330 aa15.24■□□□□ 0.03
SPT8YLR055C DNF3Q12674 1656 aa15.23■□□□□ 0.03
SPT8YLR055C URN1Q06525 465 aaKnown RBP15.21■□□□□ 0.03
SPT8YLR055C NUP188P52593 1655 aaKnown RBP15.2■□□□□ 0.02
SPT8YLR055C GCN2P15442 1659 aa15.19■□□□□ 0.02
SPT8YLR055C VMR1P38735 1592 aa15.16■□□□□ 0.02
SPT8YLR055C POL5P39985 1022 aaKnown RBP15.11■□□□□ 0.01
SPT8YLR055C IPL1P38991 367 aa15.1■□□□□ 0.01
SPT8YLR055C IML1P47170 1584 aa15.08■□□□□ 0.01
SPT8YLR055C PDR5P33302 1511 aaKnown RBP15.08■□□□□ 0
SPT8YLR055C TYS1P36421 394 aaKnown RBP15.05■□□□□ -0
SPT8YLR055C ENP1P38333 483 aaKnown RBP15.04■□□□□ -0
SPT8YLR055C MAK10Q02197 733 aa15□□□□□ -0.01
SPT8YLR055C PDR11P40550 1411 aa14.97□□□□□ -0.01
SPT8YLR055C HAP1P0CE41 1502 aa14.96□□□□□ -0.01
SPT8YLR055C YFR006WP43590 535 aa14.95□□□□□ -0.02
SPT8YLR055C PAF1P38351 445 aa14.94□□□□□ -0.02
SPT8YLR055C USO1P25386 1790 aa14.9□□□□□ -0.02
SPT8YLR055C SEC3P33332 1336 aaKnown RBP14.88□□□□□ -0.03
SPT8YLR055C NOP7P53261 605 aaKnown RBP14.87□□□□□ -0.03
SPT8YLR055C SPT7P35177 1332 aa14.87□□□□□ -0.03
SPT8YLR055C RAV1P47104 1357 aa14.85□□□□□ -0.03
SPT8YLR055C BFR2Q06631 534 aaKnown RBP14.85□□□□□ -0.03
SPT8YLR055C RTC1Q08281 1341 aa14.77□□□□□ -0.05
SPT8YLR055C TY1B-NL2Q99337 1749 aaKnown RBP14.77□□□□□ -0.05
SPT8YLR055C NUP192P47054 1683 aa14.73□□□□□ -0.05
SPT8YLR055C BCK1Q01389 1478 aa14.69□□□□□ -0.06
SPT8YLR055C KRE5P22023 1365 aa14.69□□□□□ -0.06
SPT8YLR055C MRX12P47084 519 aa14.68□□□□□ -0.06
SPT8YLR055C YMR196WQ04336 1088 aa14.66□□□□□ -0.06
SPT8YLR055C RIA1P53893 1110 aa14.64□□□□□ -0.07
SPT8YLR055C RAD9P14737 1309 aa14.64□□□□□ -0.07
SPT8YLR055C THI12P42883 340 aa14.63□□□□□ -0.07
SPT8YLR055C THI5P43534 340 aa14.63□□□□□ -0.07
SPT8YLR055C THI11P47183 340 aa14.63□□□□□ -0.07
SPT8YLR055C THI13Q07748 340 aa14.63□□□□□ -0.07
SPT8YLR055C ALD4P46367 519 aaKnown RBP14.62□□□□□ -0.07
SPT8YLR055C CAB1Q04430 367 aa14.62□□□□□ -0.07
SPT8YLR055C CFT1Q06632 1357 aaKnown RBP14.61□□□□□ -0.07
SPT8YLR055C PRS1P32895 427 aaKnown RBP14.6□□□□□ -0.07
SPT8YLR055C TAF5P38129 798 aa14.6□□□□□ -0.07
SPT8YLR055C ESL2P36168 1195 aa14.59□□□□□ -0.07
SPT8YLR055C LEU3P08638 886 aa14.55□□□□□ -0.08
SPT8YLR055C YNR029CP53729 429 aaKnown RBP14.52□□□□□ -0.09
SPT8YLR055C MHP1P43638 1398 aa14.5□□□□□ -0.09
SPT8YLR055C PSD2P53037 1138 aaKnown RBP14.5□□□□□ -0.09
SPT8YLR055C NAP1P25293 417 aaKnown RBP14.49□□□□□ -0.09
SPT8YLR055C TAF8Q03750 510 aa14.49□□□□□ -0.09
SPT8YLR055C YLR419WQ06698 1435 aaKnown RBP14.45□□□□□ -0.1
Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms