RNA–Protein interactions for RNA: YGR003W

CUL3, Transcript of Ubiquitin-protein ligase, yeastyeast

Gene CUL3, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CUL3YGR003W YEL023CP39992 682 aa5.71□□□□□ -1.49
CUL3YGR003W DCW1P36091 449 aa5.71□□□□□ -1.5
CUL3YGR003W DPS1P04802 557 aaKnown RBP5.68□□□□□ -1.5
CUL3YGR003W RGA2Q06407 1009 aa5.68□□□□□ -1.5
CUL3YGR003W CST9Q06032 482 aa5.67□□□□□ -1.5
CUL3YGR003W ELP4Q02884 456 aaKnown RBP5.66□□□□□ -1.5
CUL3YGR003W SSP1P38871 571 aa5.65□□□□□ -1.5
CUL3YGR003W TFA1P36100 482 aa5.63□□□□□ -1.51
CUL3YGR003W YDR344CQ05510 147 aa5.63□□□□□ -1.51
CUL3YGR003W MGA2P40578 1113 aa5.62□□□□□ -1.51
CUL3YGR003W PML39Q03760 334 aa5.62□□□□□ -1.51
CUL3YGR003W RCR1P38212 213 aa5.62□□□□□ -1.51
CUL3YGR003W ARH1P48360 493 aa5.56□□□□□ -1.52
CUL3YGR003W RGA1P39083 1007 aa5.55□□□□□ -1.52
CUL3YGR003W GRE2Q12068 342 aaKnown RBP5.54□□□□□ -1.52
CUL3YGR003W SRC1Q03707 834 aa5.52□□□□□ -1.53
CUL3YGR003W SPT23P35210 1082 aa5.51□□□□□ -1.53
CUL3YGR003W MID1P41821 548 aa5.5□□□□□ -1.53
CUL3YGR003W PEX29Q03370 554 aa5.47□□□□□ -1.53
CUL3YGR003W ATH1P48016 1211 aa5.47□□□□□ -1.53
CUL3YGR003W GUT1P32190 709 aa5.46□□□□□ -1.54
CUL3YGR003W HAP5Q02516 242 aa5.43□□□□□ -1.54
CUL3YGR003W MIF2P35201 549 aa5.43□□□□□ -1.54
CUL3YGR003W PTC2P39966 464 aaKnown RBP5.41□□□□□ -1.54
CUL3YGR003W BNI4P53858 892 aa5.41□□□□□ -1.54
CUL3YGR003W YML082WQ04533 649 aaKnown RBP5.4□□□□□ -1.54
CUL3YGR003W PTC3P34221 468 aaKnown RBP5.4□□□□□ -1.55
CUL3YGR003W NST1P53935 1240 aa5.4□□□□□ -1.55
CUL3YGR003W AI4P03878 556 aa5.37□□□□□ -1.55
CUL3YGR003W MPH3P0CE00 602 aa5.37□□□□□ -1.55
CUL3YGR003W EDS1P38073 919 aa5.36□□□□□ -1.55
CUL3YGR003W MAK11P20484 414 aaKnown RBP5.35□□□□□ -1.55
CUL3YGR003W SOL3P38858 249 aa5.35□□□□□ -1.55
CUL3YGR003W RAS1P01119 309 aa5.34□□□□□ -1.55
CUL3YGR003W MPC54Q08550 464 aa5.32□□□□□ -1.56
CUL3YGR003W ILV3P39522 585 aaKnown RBP5.29□□□□□ -1.56
CUL3YGR003W NMA111P53920 997 aa5.29□□□□□ -1.56
CUL3YGR003W TRK1P12685 1235 aa5.28□□□□□ -1.56
CUL3YGR003W COQ8P27697 501 aa5.27□□□□□ -1.57
CUL3YGR003W RAM2P29703 316 aa5.25□□□□□ -1.57
CUL3YGR003W AMS1P22855 1083 aa5.24□□□□□ -1.57
CUL3YGR003W DPL1Q05567 589 aa5.23□□□□□ -1.57
CUL3YGR003W YGR273CP53329 174 aa5.23□□□□□ -1.57
CUL3YGR003W GYP1Q08484 637 aa5.23□□□□□ -1.57
CUL3YGR003W YPR015CQ12531 247 aa5.22□□□□□ -1.57
CUL3YGR003W SLI15P38283 698 aa5.21□□□□□ -1.58
CUL3YGR003W YPL062WQ02781 134 aa5.2□□□□□ -1.58
CUL3YGR003W RAM1P22007 431 aa5.19□□□□□ -1.58
CUL3YGR003W ISU2Q12056 156 aa5.17□□□□□ -1.58
CUL3YGR003W SAS4Q04003 481 aa5.15□□□□□ -1.58
CUL3YGR003W NOP53Q12080 455 aaKnown RBP5.15□□□□□ -1.58
CUL3YGR003W YEL077CQ3E7X8 1277 aa5.13□□□□□ -1.59
CUL3YGR003W SDH2P21801 266 aa5.12□□□□□ -1.59
CUL3YGR003W PDR1P12383 1068 aa5.08□□□□□ -1.6
CUL3YGR003W GBP2P25555 427 aaKnown RBP RIP-Chip data5.08□□□□□ -1.6not detected
CUL3YGR003W CDC73Q06697 393 aa5.08□□□□□ -1.6
CUL3YGR003W MRF1P30775 413 aaPredicted RBP5.08□□□□□ -1.6
CUL3YGR003W KEX1P09620 729 aa5.07□□□□□ -1.6
CUL3YGR003W GAR1P28007 205 aaKnown RBP5.07□□□□□ -1.6
CUL3YGR003W BRE2P43132 505 aa5.05□□□□□ -1.6
CUL3YGR003W GCR2Q01722 534 aa5.05□□□□□ -1.6
CUL3YGR003W ERG12P07277 443 aa4.99□□□□□ -1.61
CUL3YGR003W RPP1BP10622 106 aaKnown RBP4.99□□□□□ -1.61
CUL3YGR003W PRT1P06103 763 aaKnown RBP4.98□□□□□ -1.61
CUL3YGR003W AIR1P40507 360 aaKnown RBP4.98□□□□□ -1.61
CUL3YGR003W BUD20Q08004 166 aaPredicted RBP4.97□□□□□ -1.61
CUL3YGR003W YLR326WQ06170 240 aaKnown RBP4.96□□□□□ -1.62
CUL3YGR003W UBP14P38237 781 aaKnown RBP4.94□□□□□ -1.62
CUL3YGR003W PCS60P38137 543 aaKnown RBP RIP-Chip data4.93□□□□□ -1.62not detected
CUL3YGR003W CLA4P48562 842 aa4.93□□□□□ -1.62
CUL3YGR003W VHR2P40041 505 aa4.93□□□□□ -1.62
CUL3YGR003W RAD54P32863 898 aa4.92□□□□□ -1.62
CUL3YGR003W CST6P40535 587 aa4.92□□□□□ -1.62
CUL3YGR003W YRR1Q12172 810 aa4.91□□□□□ -1.62
CUL3YGR003W PEX21P50091 288 aa4.91□□□□□ -1.62
CUL3YGR003W MET22P32179 357 aa4.9□□□□□ -1.63
CUL3YGR003W STR2P47164 639 aa4.9□□□□□ -1.63
CUL3YGR003W ISM1P48526 1002 aa4.89□□□□□ -1.63
CUL3YGR003W ENV9Q08651 330 aa4.89□□□□□ -1.63
CUL3YGR003W LAM6Q08001 693 aa4.88□□□□□ -1.63
CUL3YGR003W CDC4P07834 779 aa4.88□□□□□ -1.63
CUL3YGR003W SPT16P32558 1035 aaKnown RBP4.87□□□□□ -1.63
CUL3YGR003W NUD1P32336 851 aa4.86□□□□□ -1.63
CUL3YGR003W NPL4P33755 580 aa4.86□□□□□ -1.63
CUL3YGR003W FRK1Q03002 865 aaPredicted RBP4.86□□□□□ -1.63
CUL3YGR003W YDR444WQ04093 687 aa4.84□□□□□ -1.63
CUL3YGR003W TUM1Q08686 304 aaKnown RBP4.84□□□□□ -1.64
CUL3YGR003W GCD11P32481 527 aaKnown RBP4.83□□□□□ -1.64
CUL3YGR003W TFB4Q12004 338 aa4.83□□□□□ -1.64
CUL3YGR003W KIC1P38692 1080 aa4.82□□□□□ -1.64
CUL3YGR003W SET1P38827 1080 aaKnown RBP4.82□□□□□ -1.64
CUL3YGR003W CSC1Q06538 782 aa4.82□□□□□ -1.64
CUL3YGR003W BDP1P46678 594 aa4.81□□□□□ -1.64
CUL3YGR003W GAP1P19145 602 aaPredicted RBP4.8□□□□□ -1.64
CUL3YGR003W HED1Q03937 162 aa4.8□□□□□ -1.64
CUL3YGR003W TY1A-DR4O74302 440 aa4.79□□□□□ -1.64
CUL3YGR003W TY1A-HP0C2I4 478 aaKnown RBP4.79□□□□□ -1.64
CUL3YGR003W TY1A-AP0CX57 440 aa4.79□□□□□ -1.64
CUL3YGR003W TY1A-PR1P0CX58 440 aa4.79□□□□□ -1.64
CUL3YGR003W TY1A-ORP0CX59 440 aa4.79□□□□□ -1.64
Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms