RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	ULS1	Q08562	1619 aa		21.56	■■□□□ 1.04
DEP1	YAL013W	NTE1	Q04958	1679 aa		21.56	■■□□□ 1.04
DEP1	YAL013W	RPO21	P04050	1733 aa	Known RBP	21.52	■■□□□ 1.04
DEP1	YAL013W	PDR15	Q04182	1529 aa	Known RBP	21.52	■■□□□ 1.04
DEP1	YAL013W	MET5	P47169	1442 aa		21.5	■■□□□ 1.03
DEP1	YAL013W	TAF7	Q05021	590 aa		21.5	■■□□□ 1.03
DEP1	YAL013W	NUP159	P40477	1460 aa		21.4	■■□□□ 1.02
DEP1	YAL013W	YRF1-1	P0CX20	1796 aa		21.36	■■□□□ 1.01
DEP1	YAL013W	YRF1-5	P0CX21	1796 aa		21.36	■■□□□ 1.01
DEP1	YAL013W	YRF1-8	P0CX22	1796 aa		21.36	■■□□□ 1.01
DEP1	YAL013W	GEA1	P47102	1408 aa	Predicted RBP	21.29	■■□□□ 1
DEP1	YAL013W	GEA2	P39993	1459 aa	Known RBP	21.28	■■□□□ 1
DEP1	YAL013W	IRC20	Q06554	1556 aa		21.27	■■□□□ 1
DEP1	YAL013W	TY3B-G	Q99315	1547 aa		21.19	■□□□□ 0.98
DEP1	YAL013W	PDR12	Q02785	1511 aa		21.15	■□□□□ 0.98
DEP1	YAL013W	IFH1	P39520	1085 aa		21.15	■□□□□ 0.98
DEP1	YAL013W	RTT106	P40161	455 aa		21.12	■□□□□ 0.97
DEP1	YAL013W	SPO14	P36126	1683 aa		21.1	■□□□□ 0.97
DEP1	YAL013W	YBT1	P32386	1661 aa		21.09	■□□□□ 0.97
DEP1	YAL013W	VPS15	P22219	1454 aa		21.09	■□□□□ 0.97
DEP1	YAL013W	NUP170	P38181	1502 aa		21.04	■□□□□ 0.96
DEP1	YAL013W	MET10	P39692	1035 aa		21.04	■□□□□ 0.96
DEP1	YAL013W	GDB1	Q06625	1536 aa		21.03	■□□□□ 0.96
DEP1	YAL013W	CAT8	P39113	1433 aa		21.02	■□□□□ 0.96
DEP1	YAL013W	LTE1	P07866	1435 aa		21	■□□□□ 0.95
DEP1	YAL013W	IKI3	Q06706	1349 aa	Known RBP	21	■□□□□ 0.95
DEP1	YAL013W	PDR10	P51533	1564 aa		20.96	■□□□□ 0.95
DEP1	YAL013W	NUP157	P40064	1391 aa	Known RBP	20.87	■□□□□ 0.93
DEP1	YAL013W	ARO1	P08566	1588 aa	Known RBP	20.82	■□□□□ 0.92
DEP1	YAL013W	IQG1	Q12280	1495 aa		20.75	■□□□□ 0.91
DEP1	YAL013W	BNI1	P41832	1953 aa		20.74	■□□□□ 0.91
DEP1	YAL013W	SSM4	P40318	1319 aa		20.73	■□□□□ 0.91
DEP1	YAL013W	BUD3	P25558	1636 aa		20.71	■□□□□ 0.91
DEP1	YAL013W	SRB8	P25648	1427 aa		20.64	■□□□□ 0.89
DEP1	YAL013W	YSP2	Q06681	1438 aa		20.63	■□□□□ 0.89
DEP1	YAL013W	DRS2	P39524	1355 aa		20.62	■□□□□ 0.89
DEP1	YAL013W	SEC7	P11075	2009 aa	Known RBP	20.59	■□□□□ 0.89
DEP1	YAL013W	DOP1	Q03921	1698 aa		20.57	■□□□□ 0.88
DEP1	YAL013W	CKB1	P43639	278 aa		20.55	■□□□□ 0.88
DEP1	YAL013W	ITT1	Q04638	464 aa		20.55	■□□□□ 0.88
DEP1	YAL013W	TRM3	Q07527	1436 aa		20.53	■□□□□ 0.88
DEP1	YAL013W	MMS1	Q06211	1407 aa		20.45	■□□□□ 0.86
DEP1	YAL013W	CHC1	P22137	1653 aa	Known RBP	20.45	■□□□□ 0.86
DEP1	YAL013W	BNR1	P40450	1375 aa		20.37	■□□□□ 0.85
DEP1	YAL013W	GCN2	P15442	1659 aa		20.31	■□□□□ 0.84
DEP1	YAL013W	BUD21	Q08492	214 aa	Predicted RBP	20.29	■□□□□ 0.84
DEP1	YAL013W	DNF2	Q12675	1612 aa		20.2	■□□□□ 0.82
DEP1	YAL013W	YOR093C	Q12275	1648 aa		20.13	■□□□□ 0.81
DEP1	YAL013W	PDR5	P33302	1511 aa	Known RBP	20.07	■□□□□ 0.8
DEP1	YAL013W	NUP188	P52593	1655 aa	Known RBP	20.07	■□□□□ 0.8
DEP1	YAL013W	VMR1	P38735	1592 aa		20.06	■□□□□ 0.8
DEP1	YAL013W	IML1	P47170	1584 aa		19.91	■□□□□ 0.78
DEP1	YAL013W	PDR11	P40550	1411 aa		19.89	■□□□□ 0.77
DEP1	YAL013W	URN1	Q06525	465 aa	Known RBP	19.83	■□□□□ 0.77
DEP1	YAL013W	YAP3	P38749	330 aa		19.81	■□□□□ 0.76
DEP1	YAL013W	DNF3	Q12674	1656 aa		19.78	■□□□□ 0.76
DEP1	YAL013W	HAP1	P0CE41	1502 aa		19.78	■□□□□ 0.76
DEP1	YAL013W	IPL1	P38991	367 aa		19.78	■□□□□ 0.76
DEP1	YAL013W	RAV1	P47104	1357 aa		19.78	■□□□□ 0.76
DEP1	YAL013W	PAF1	P38351	445 aa		19.74	■□□□□ 0.75
DEP1	YAL013W	ABP1	P15891	592 aa	Known RBP	19.72	■□□□□ 0.75
DEP1	YAL013W	NOP7	P53261	605 aa	Known RBP	19.72	■□□□□ 0.75
DEP1	YAL013W	TYS1	P36421	394 aa	Known RBP	19.71	■□□□□ 0.75
DEP1	YAL013W	BFR2	Q06631	534 aa	Known RBP	19.71	■□□□□ 0.75
DEP1	YAL013W	RTC1	Q08281	1341 aa		19.68	■□□□□ 0.74
DEP1	YAL013W	NUP192	P47054	1683 aa		19.62	■□□□□ 0.73
DEP1	YAL013W	TY3B-I	Q7LHG5	1498 aa	Known RBP	19.46	■□□□□ 0.71
DEP1	YAL013W	MAK10	Q02197	733 aa		19.43	■□□□□ 0.7
DEP1	YAL013W	BCK1	Q01389	1478 aa		19.39	■□□□□ 0.69
DEP1	YAL013W	ESL2	P36168	1195 aa		19.36	■□□□□ 0.69
DEP1	YAL013W	POL5	P39985	1022 aa	Known RBP	19.36	■□□□□ 0.69
DEP1	YAL013W	TAF5	P38129	798 aa		19.32	■□□□□ 0.68
DEP1	YAL013W	ALD4	P46367	519 aa	Known RBP	19.32	■□□□□ 0.68
DEP1	YAL013W	USO1	P25386	1790 aa		19.29	■□□□□ 0.68
DEP1	YAL013W	RAD9	P14737	1309 aa		19.29	■□□□□ 0.68
DEP1	YAL013W	MIF2	P35201	549 aa		19.29	■□□□□ 0.68
DEP1	YAL013W	TY1B-NL2	Q99337	1749 aa	Known RBP	19.28	■□□□□ 0.68
DEP1	YAL013W	CFT1	Q06632	1357 aa	Known RBP	19.23	■□□□□ 0.67
DEP1	YAL013W	YLR419W	Q06698	1435 aa	Known RBP	19.2	■□□□□ 0.66
DEP1	YAL013W	CAB1	Q04430	367 aa		19.2	■□□□□ 0.66
DEP1	YAL013W	KRE5	P22023	1365 aa		19.19	■□□□□ 0.66
DEP1	YAL013W	KIP3	P53086	805 aa	Known RBP	19.16	■□□□□ 0.66
DEP1	YAL013W	MRX12	P47084	519 aa		19.12	■□□□□ 0.65
DEP1	YAL013W	ORC1	P54784	914 aa	Predicted RBP	19.12	■□□□□ 0.65
DEP1	YAL013W	TAF8	Q03750	510 aa		19.12	■□□□□ 0.65
DEP1	YAL013W	SPE2	P21182	396 aa		19.1	■□□□□ 0.65
DEP1	YAL013W	MHP1	P43638	1398 aa		19.09	■□□□□ 0.65
DEP1	YAL013W	RIA1	P53893	1110 aa		19.08	■□□□□ 0.64
DEP1	YAL013W	NAP1	P25293	417 aa	Known RBP	19.02	■□□□□ 0.64
DEP1	YAL013W	YMR196W	Q04336	1088 aa		19.01	■□□□□ 0.63
DEP1	YAL013W	YNR029C	P53729	429 aa	Known RBP	18.99	■□□□□ 0.63
DEP1	YAL013W	SCT1	P32784	759 aa		18.97	■□□□□ 0.63
DEP1	YAL013W	MLP1	Q02455	1875 aa	Known RBP	18.92	■□□□□ 0.62
DEP1	YAL013W	SEC3	P33332	1336 aa	Known RBP	18.91	■□□□□ 0.62
DEP1	YAL013W	PSK1	P31374	1356 aa		18.87	■□□□□ 0.61
DEP1	YAL013W	CHZ1	P40019	153 aa	Predicted RBP	18.87	■□□□□ 0.61
DEP1	YAL013W	THI12	P42883	340 aa		18.87	■□□□□ 0.61
DEP1	YAL013W	THI5	P43534	340 aa		18.87	■□□□□ 0.61
DEP1	YAL013W	THI11	P47183	340 aa		18.87	■□□□□ 0.61
DEP1	YAL013W	PDS5	Q04264	1277 aa		18.87	■□□□□ 0.61

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