RNA–Protein interactions for RNA: ENST00000640957.1

SCARB2-227, Transcript of scavenger receptor class B member 2, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCARB2, Length 3,255 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-227ENST00000640957 RTN4Q9NQC3 1192 aaKnown RBP19.29■□□□□ 0.68
SCARB2-227ENST00000640957 SYNJ1O43426 1573 aa19.28■□□□□ 0.68
SCARB2-227ENST00000640957 B4GALNT3Q6L9W6 998 aa19.27■□□□□ 0.68
SCARB2-227ENST00000640957 CCDC136Q96JN2 1154 aa19.25■□□□□ 0.67
SCARB2-227ENST00000640957 PPP1R15AO75807 674 aaPredicted RBP19.21■□□□□ 0.67
SCARB2-227ENST00000640957 RAB3GAP2Q9H2M9 1393 aa19.21■□□□□ 0.66
SCARB2-227ENST00000640957 ARID3CA6NKF2 412 aa19.19■□□□□ 0.66
SCARB2-227ENST00000640957 PAK3O75914 559 aaPredicted RBP19.19■□□□□ 0.66
SCARB2-227ENST00000640957 KIF21BO75037 1637 aa19.18■□□□□ 0.66
SCARB2-227ENST00000640957 SALL2Q9Y467 1007 aaPredicted RBP19.13■□□□□ 0.65
SCARB2-227ENST00000640957 WDR97A6NE52 1622 aa19.13■□□□□ 0.65
SCARB2-227ENST00000640957 FAM9BQ8IZU0 186 aa19.13■□□□□ 0.65
SCARB2-227ENST00000640957 CCNB3Q8WWL7 1395 aa19.12■□□□□ 0.65
SCARB2-227ENST00000640957 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.11■□□□□ 0.65
SCARB2-227ENST00000640957 FANCIQ9NVI1 1328 aa19.11■□□□□ 0.65
SCARB2-227ENST00000640957 CCDC184Q52MB2 194 aa19.1■□□□□ 0.65
SCARB2-227ENST00000640957 IL27Q8NEV9 243 aa19.06■□□□□ 0.64
SCARB2-227ENST00000640957 KIF27Q86VH2 1401 aa19.04■□□□□ 0.64
SCARB2-227ENST00000640957 CCER2I3L3R5 266 aa19.01■□□□□ 0.63
SCARB2-227ENST00000640957 NPM2Q86SE8 214 aaKnown RBP19.01■□□□□ 0.63
SCARB2-227ENST00000640957 CUX2O14529 1486 aa19.01■□□□□ 0.63
SCARB2-227ENST00000640957 NOP58Q9Y2X3 529 aaKnown RBP19.01■□□□□ 0.63
SCARB2-227ENST00000640957 ARAP1Q96P48 1450 aa19■□□□□ 0.63
SCARB2-227ENST00000640957 MAPKBP1O60336 1514 aa18.98■□□□□ 0.63
SCARB2-227ENST00000640957 PPP4R2Q9NY27 417 aa18.96■□□□□ 0.63
SCARB2-227ENST00000640957 DNAJC5BQ9UF47 199 aa18.95■□□□□ 0.62
SCARB2-227ENST00000640957 POLR3GLQ9BT43 218 aa18.94■□□□□ 0.62
SCARB2-227ENST00000640957 RTL5Q5HYW3 569 aaPredicted RBP18.92■□□□□ 0.62
SCARB2-227ENST00000640957 LAS1LQ9Y4W2 734 aaKnown RBP18.92■□□□□ 0.62
SCARB2-227ENST00000640957 RRBP1Q9P2E9 1410 aaKnown RBP18.91■□□□□ 0.62
SCARB2-227ENST00000640957 SETD5Q9C0A6 1442 aa18.91■□□□□ 0.62
SCARB2-227ENST00000640957 TONSLQ96HA7 1378 aa18.91■□□□□ 0.62
SCARB2-227ENST00000640957 CUX1P39880 1505 aa18.89■□□□□ 0.61
SCARB2-227ENST00000640957 CARMIL1Q5VZK9 1371 aa18.88■□□□□ 0.61
SCARB2-227ENST00000640957 MRS2Q9HD23 443 aa18.87■□□□□ 0.61
SCARB2-227ENST00000640957 PEG3Q9GZU2 1588 aa18.85■□□□□ 0.61
SCARB2-227ENST00000640957 CHIC2Q9UKJ5 165 aa18.84■□□□□ 0.61
SCARB2-227ENST00000640957 PHLDB1Q86UU1 1377 aa18.84■□□□□ 0.61
SCARB2-227ENST00000640957 NCAPD3P42695 1498 aa18.83■□□□□ 0.61
SCARB2-227ENST00000640957 ZBTB47Q9UFB7 747 aaPredicted RBP18.83■□□□□ 0.6
SCARB2-227ENST00000640957 TOP2BQ02880 1626 aa18.82■□□□□ 0.6
SCARB2-227ENST00000640957 IGF1RP08069 1367 aa18.82■□□□□ 0.6
SCARB2-227ENST00000640957 PRXQ9BXM0 1461 aa18.82■□□□□ 0.6
SCARB2-227ENST00000640957 CADPSQ9ULU8 1353 aa18.81■□□□□ 0.6
SCARB2-227ENST00000640957 HSPA5P11021 654 aaKnown RBP18.8■□□□□ 0.6
SCARB2-227ENST00000640957 ANP32AP39687 249 aaKnown RBP18.8■□□□□ 0.6
SCARB2-227ENST00000640957 TDRD9Q8NDG6 1382 aaKnown RBP18.8■□□□□ 0.6
SCARB2-227ENST00000640957 EIF5BO60841 1220 aaKnown RBP18.79■□□□□ 0.6
SCARB2-227ENST00000640957 WASHC2AQ641Q2 1341 aa18.78■□□□□ 0.6
SCARB2-227ENST00000640957 RAD54L2Q9Y4B4 1467 aa18.78■□□□□ 0.6
SCARB2-227ENST00000640957 FOXD1Q16676 465 aa18.77■□□□□ 0.6
SCARB2-227ENST00000640957 NESP48681 1621 aa18.76■□□□□ 0.59
SCARB2-227ENST00000640957 ARHGAP35Q9NRY4 1499 aa18.76■□□□□ 0.59
SCARB2-227ENST00000640957 C11orf95C9JLR9 678 aaPredicted RBP18.75■□□□□ 0.59
SCARB2-227ENST00000640957 FHOD3Q2V2M9 1422 aa18.75■□□□□ 0.59
SCARB2-227ENST00000640957 FBLN2P98095 1184 aa18.75■□□□□ 0.59
SCARB2-227ENST00000640957 CFTRP13569 1480 aa18.74■□□□□ 0.59
SCARB2-227ENST00000640957 FGD5Q6ZNL6 1462 aa18.73■□□□□ 0.59
SCARB2-227ENST00000640957 SKAP1Q86WV1 359 aa18.73■□□□□ 0.59
SCARB2-227ENST00000640957 MYT1LQ9UL68 1186 aa18.73■□□□□ 0.59
SCARB2-227ENST00000640957 AKNAQ7Z591 1439 aa18.72■□□□□ 0.59
SCARB2-227ENST00000640957 IPO9Q96P70 1041 aaKnown RBP18.72■□□□□ 0.59
SCARB2-227ENST00000640957 RRP7BPQ9NSQ0 103 aa18.72■□□□□ 0.59
SCARB2-227ENST00000640957 NEFMP07197 916 aa18.71■□□□□ 0.59
SCARB2-227ENST00000640957 MTUS2Q5JR59 1369 aa18.67■□□□□ 0.58
SCARB2-227ENST00000640957 BRPF3Q9ULD4 1205 aa18.66■□□□□ 0.58
SCARB2-227ENST00000640957 FANCD2Q9BXW9 1451 aa18.65■□□□□ 0.58
SCARB2-227ENST00000640957 PRKRIP1Q9H875 184 aaPredicted RBP18.64■□□□□ 0.58
SCARB2-227ENST00000640957 SLC4A3P48751 1232 aa18.64■□□□□ 0.57
SCARB2-227ENST00000640957 ZNF326Q5BKZ1 582 aaKnown RBP18.64■□□□□ 0.57
SCARB2-227ENST00000640957 ERICH3Q5RHP9 1530 aa18.63■□□□□ 0.57
SCARB2-227ENST00000640957 EIF4G2P78344 907 aaKnown RBP eCLIP18.61■□□□□ 0.57
SCARB2-227ENST00000640957 HMGXB3Q12766 1538 aa18.59■□□□□ 0.57
SCARB2-227ENST00000640957 TIMELESSQ9UNS1 1208 aa18.57■□□□□ 0.56
SCARB2-227ENST00000640957 CC2D2AQ9P2K1 1620 aa18.56■□□□□ 0.56
SCARB2-227ENST00000640957 ZNF777Q9ULD5 760 aaPredicted RBP18.56■□□□□ 0.56
SCARB2-227ENST00000640957 BIVM-ERCC5R4GMW8 1640 aa18.55■□□□□ 0.56
SCARB2-227ENST00000640957 L3MBTL2Q969R5 705 aa18.54■□□□□ 0.56
SCARB2-227ENST00000640957 ZBED9Q6R2W3 1325 aa18.54■□□□□ 0.56
SCARB2-227ENST00000640957 LRRC9Q6ZRR7 1453 aa18.54■□□□□ 0.56
SCARB2-227ENST00000640957 FHAD1B1AJZ9 1412 aa18.53■□□□□ 0.56
SCARB2-227ENST00000640957 ERICH6BQ5W0A0 696 aa18.53■□□□□ 0.56
SCARB2-227ENST00000640957 EXOC6Q8TAG9 804 aa18.52■□□□□ 0.55
SCARB2-227ENST00000640957 AQRO60306 1485 aaKnown RBP eCLIP18.52■□□□□ 0.55
SCARB2-227ENST00000640957 PTPRKQ15262 1439 aa18.47■□□□□ 0.55
SCARB2-227ENST00000640957 PLIN1O60240 522 aa18.46■□□□□ 0.55
SCARB2-227ENST00000640957 ARXQ96QS3 562 aa18.46■□□□□ 0.55
SCARB2-227ENST00000640957 TIAM1Q13009 1591 aa18.46■□□□□ 0.55
SCARB2-227ENST00000640957 CCDC18Q5T9S5 1454 aa18.46■□□□□ 0.55
SCARB2-227ENST00000640957 NBPF8Q3BBV2 869 aa18.45■□□□□ 0.54
SCARB2-227ENST00000640957 NUDCQ9Y266 331 aa18.45■□□□□ 0.54
SCARB2-227ENST00000640957 PDE4AP27815 886 aa18.45■□□□□ 0.54
SCARB2-227ENST00000640957 POLA1P09884 1462 aaPredicted RBP18.44■□□□□ 0.54
SCARB2-227ENST00000640957 KIF7Q2M1P5 1343 aa18.42■□□□□ 0.54
SCARB2-227ENST00000640957 CNTLNQ9NXG0 1405 aa18.41■□□□□ 0.54
SCARB2-227ENST00000640957 TMC1Q8TDI8 760 aa18.41■□□□□ 0.54
SCARB2-227ENST00000640957 CCDC7Q96M83 1385 aa18.4■□□□□ 0.54
SCARB2-227ENST00000640957 TOPBP1Q92547 1522 aa18.39■□□□□ 0.53
SCARB2-227ENST00000640957 FRAT1Q92837 279 aaPredicted RBP18.37■□□□□ 0.53
SCARB2-227ENST00000640957 MPHOSPH9Q99550 1183 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms