RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SHROOM2Q13796 1616 aa30.85■■■□□ 2.53
CLN3-259ENST00000637551 RUSC2Q8N2Y8 1516 aa30.83■■■□□ 2.53
CLN3-259ENST00000637551 RAPGEF2Q9Y4G8 1499 aa30.77■■■□□ 2.52
CLN3-259ENST00000637551 KIAA0586Q9BVV6 1533 aa30.77■■■□□ 2.52
CLN3-259ENST00000637551 CHIC1Q5VXU3 224 aa30.72■■■□□ 2.51
CLN3-259ENST00000637551 PRXQ9BXM0 1461 aa30.71■■■□□ 2.51
CLN3-259ENST00000637551 IQGAP2Q13576 1575 aa30.6■■■□□ 2.49
CLN3-259ENST00000637551 JPH4Q96JJ6 628 aa30.58■■■□□ 2.49
CLN3-259ENST00000637551 CSRNP3Q8WYN3 585 aa30.57■■■□□ 2.48
CLN3-259ENST00000637551 PRG4Q92954 1404 aaPredicted RBP30.55■■■□□ 2.48
CLN3-259ENST00000637551 CTTNBP2Q8WZ74 1663 aa30.54■■■□□ 2.48
CLN3-259ENST00000637551 ERCC6L2Q5T890 1561 aa30.49■■■□□ 2.47
CLN3-259ENST00000637551 KIF21BO75037 1637 aa30.47■■■□□ 2.47
CLN3-259ENST00000637551 UGGT2Q9NYU1 1516 aa30.47■■■□□ 2.47
CLN3-259ENST00000637551 CARMIL2Q6F5E8 1435 aa30.43■■■□□ 2.46
CLN3-259ENST00000637551 GOLGA3Q08378 1498 aa30.32■■■□□ 2.44
CLN3-259ENST00000637551 DISP1Q96F81 1524 aa30.32■■■□□ 2.44
CLN3-259ENST00000637551 KIAA0556O60303 1618 aa30.29■■■□□ 2.44
CLN3-259ENST00000637551 TNIKQ9UKE5 1360 aa30.28■■■□□ 2.44
CLN3-259ENST00000637551 PTPRGP23470 1445 aa30.21■■■□□ 2.43
CLN3-259ENST00000637551 KIF13AQ9H1H9 1805 aa30.2■■■□□ 2.43
CLN3-259ENST00000637551 FAM9AQ8IZU1 332 aaPredicted RBP30.17■■■□□ 2.42
CLN3-259ENST00000637551 SAMD9Q5K651 1589 aa30.15■■■□□ 2.42
CLN3-259ENST00000637551 UHRF1BP1LA0JNW5 1464 aa30.14■■■□□ 2.42
CLN3-259ENST00000637551 ADCY10Q96PN6 1610 aa30.12■■■□□ 2.41
CLN3-259ENST00000637551 EFCAB5A4FU69 1503 aa30.09■■■□□ 2.41
CLN3-259ENST00000637551 MAPKBP1O60336 1514 aa30.06■■■□□ 2.4
CLN3-259ENST00000637551 ABCC2Q92887 1545 aa30.06■■■□□ 2.4
CLN3-259ENST00000637551 UACAQ9BZF9 1416 aa30.05■■■□□ 2.4
CLN3-259ENST00000637551 FAM69CQ0P6D2 419 aa29.97■■■□□ 2.39
CLN3-259ENST00000637551 ABCA8O94911 1581 aa29.96■■■□□ 2.39
CLN3-259ENST00000637551 ABCC10Q5T3U5 1492 aa29.96■■■□□ 2.39
CLN3-259ENST00000637551 NPM1P06748 294 aaKnown RBP eCLIP29.96■■■□□ 2.39
CLN3-259ENST00000637551 KDM4FA0A1W2PPD8 638 aa29.95■■■□□ 2.39
CLN3-259ENST00000637551 KDM5BQ9UGL1 1544 aa29.95■■■□□ 2.38
CLN3-259ENST00000637551 UBTFP17480 764 aaKnown RBP29.92■■■□□ 2.38
CLN3-259ENST00000637551 ILDR1Q86SU0 546 aaPredicted RBP29.89■■■□□ 2.38
CLN3-259ENST00000637551 PLB1Q6P1J6 1458 aa29.86■■■□□ 2.37
CLN3-259ENST00000637551 DIP2BQ9P265 1576 aa29.83■■■□□ 2.37
CLN3-259ENST00000637551 ZCCHC11Q5TAX3 1644 aaKnown RBP29.82■■■□□ 2.36
CLN3-259ENST00000637551 RAPGEF6Q8TEU7 1601 aa29.8■■■□□ 2.36
CLN3-259ENST00000637551 KDM6BO15054 1643 aa29.78■■■□□ 2.36
CLN3-259ENST00000637551 ARHGAP35Q9NRY4 1499 aa29.78■■■□□ 2.36
CLN3-259ENST00000637551 FHOD3Q2V2M9 1422 aa29.78■■■□□ 2.36
CLN3-259ENST00000637551 TTBK1Q5TCY1 1321 aaPredicted RBP29.76■■■□□ 2.36
CLN3-259ENST00000637551 FMN1Q68DA7 1419 aa29.76■■■□□ 2.35
CLN3-259ENST00000637551 ASXL2Q76L83 1435 aa29.73■■■□□ 2.35
CLN3-259ENST00000637551 GLI2P10070 1586 aa29.72■■■□□ 2.35
CLN3-259ENST00000637551 P3H3Q8IVL6 736 aa29.7■■■□□ 2.35
CLN3-259ENST00000637551 WDR7Q9Y4E6 1490 aa29.67■■■□□ 2.34
CLN3-259ENST00000637551 NUP153P49790 1475 aaKnown RBP29.66■■■□□ 2.34
CLN3-259ENST00000637551 TSPOAP1O95153 1857 aa29.64■■■□□ 2.34
CLN3-259ENST00000637551 ATP10BO94823 1461 aa29.63■■■□□ 2.33
CLN3-259ENST00000637551 CLIP1P30622 1438 aa29.62■■■□□ 2.33
CLN3-259ENST00000637551 EPRSP07814 1512 aaKnown RBP29.61■■■□□ 2.33
CLN3-259ENST00000637551 HECW1Q76N89 1606 aa29.6■■■□□ 2.33
CLN3-259ENST00000637551 RANGAP1P46060 587 aaPredicted RBP29.59■■■□□ 2.33
CLN3-259ENST00000637551 EHMT2Q96KQ7 1210 aa29.59■■■□□ 2.33
CLN3-259ENST00000637551 MAP3K4Q9Y6R4 1608 aa29.53■■■□□ 2.32
CLN3-259ENST00000637551 CFAP43Q8NDM7 1665 aa29.5■■■□□ 2.31
CLN3-259ENST00000637551 CEP162Q5TB80 1403 aa29.49■■■□□ 2.31
CLN3-259ENST00000637551 CASKIN1Q8WXD9 1431 aa29.49■■■□□ 2.31
CLN3-259ENST00000637551 FYCO1Q9BQS8 1478 aa29.48■■■□□ 2.31
CLN3-259ENST00000637551 ADGRL1O94910 1474 aa29.45■■■□□ 2.31
CLN3-259ENST00000637551 CCDC18Q5T9S5 1454 aa29.44■■■□□ 2.3
CLN3-259ENST00000637551 TEX14Q8IWB6 1497 aa29.42■■■□□ 2.3
CLN3-259ENST00000637551 ABCA9Q8IUA7 1624 aa29.42■■■□□ 2.3
CLN3-259ENST00000637551 PCF11O94913 1555 aaKnown RBP29.42■■■□□ 2.3
CLN3-259ENST00000637551 PPRC1Q5VV67 1664 aaKnown RBP29.41■■■□□ 2.3
CLN3-259ENST00000637551 MAGI3Q5TCQ9 1506 aa29.39■■■□□ 2.3
CLN3-259ENST00000637551 PLEKHD1A6NEE1 506 aa29.36■■■□□ 2.29
CLN3-259ENST00000637551 CDK13Q14004 1512 aaKnown RBP29.35■■■□□ 2.29
CLN3-259ENST00000637551 CDK11AQ9UQ88 783 aaPredicted RBP29.35■■■□□ 2.29
CLN3-259ENST00000637551 LRRIQ1Q96JM4 1722 aa29.34■■■□□ 2.29
CLN3-259ENST00000637551 CD109Q6YHK3 1445 aa29.32■■■□□ 2.28
CLN3-259ENST00000637551 HECW2Q9P2P5 1572 aa29.31■■■□□ 2.28
CLN3-259ENST00000637551 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.31■■■□□ 2.28
CLN3-259ENST00000637551 HNRNPUL2Q1KMD3 747 aaKnown RBP29.31■■■□□ 2.28
CLN3-259ENST00000637551 COL17A1Q9UMD9 1497 aaPredicted RBP29.29■■■□□ 2.28
CLN3-259ENST00000637551 ARID3CA6NKF2 412 aa29.28■■■□□ 2.28
CLN3-259ENST00000637551 LOC105371045A0A1W2PR82 267 aa29.27■■■□□ 2.28
CLN3-259ENST00000637551 PHLDB1Q86UU1 1377 aa29.26■■■□□ 2.28
CLN3-259ENST00000637551 TROQ12816 1431 aaPredicted RBP29.26■■■□□ 2.27
CLN3-259ENST00000637551 KCNH8Q96L42 1107 aa29.25■■■□□ 2.27
CLN3-259ENST00000637551 KIF14Q15058 1648 aa29.23■■■□□ 2.27
CLN3-259ENST00000637551 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.21■■■□□ 2.27
CLN3-259ENST00000637551 ARAP3Q8WWN8 1544 aa29.21■■■□□ 2.27
CLN3-259ENST00000637551 VPS8Q8N3P4 1428 aa29.2■■■□□ 2.26
CLN3-259ENST00000637551 NEO1Q92859 1461 aa29.19■■■□□ 2.26
CLN3-259ENST00000637551 CFAP74Q9C0B2 1584 aa29.18■■■□□ 2.26
CLN3-259ENST00000637551 ATP1B4Q9UN42 357 aaPredicted RBP29.18■■■□□ 2.26
CLN3-259ENST00000637551 TTC37Q6PGP7 1564 aa29.15■■■□□ 2.26
CLN3-259ENST00000637551 MYO5CQ9NQX4 1742 aa29.11■■■□□ 2.25
CLN3-259ENST00000637551 MAP3K1Q13233 1512 aa29.1■■■□□ 2.25
CLN3-259ENST00000637551 PLCH2O75038 1416 aa29.08■■■□□ 2.25
CLN3-259ENST00000637551 EHBP1L1Q8N3D4 1523 aa29.05■■■□□ 2.24
CLN3-259ENST00000637551 FANCAO15360 1455 aa29.04■■■□□ 2.24
CLN3-259ENST00000637551 TIAM1Q13009 1591 aa29.01■■■□□ 2.24
CLN3-259ENST00000637551 FBXO41Q8TF61 875 aa29■■■□□ 2.23
CLN3-259ENST00000637551 PREX2Q70Z35 1606 aa29■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms