RNA–Protein interactions for RNA: ENST00000636840.1

PNKP-226, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 117 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-226ENST00000636840 CEP170Q5SW79 1584 aa13.56□□□□□ -0.24
PNKP-226ENST00000636840 RIMBP3CA6NJZ7 1639 aa13.56□□□□□ -0.24
PNKP-226ENST00000636840 RIMBP3BA6NNM3 1639 aa13.56□□□□□ -0.24
PNKP-226ENST00000636840 RIMBP3Q9UFD9 1639 aa13.56□□□□□ -0.24
PNKP-226ENST00000636840 PRG4Q92954 1404 aaPredicted RBP13.52□□□□□ -0.25
PNKP-226ENST00000636840 PRXQ9BXM0 1461 aa13.51□□□□□ -0.25
PNKP-226ENST00000636840 CARMIL2Q6F5E8 1435 aa13.48□□□□□ -0.25
PNKP-226ENST00000636840 UBTFP17480 764 aaKnown RBP13.46□□□□□ -0.25
PNKP-226ENST00000636840 ARAP1Q96P48 1450 aa13.46□□□□□ -0.25
PNKP-226ENST00000636840 SHROOM2Q13796 1616 aa13.45□□□□□ -0.26
PNKP-226ENST00000636840 NPM1P06748 294 aaKnown RBP eCLIP13.44□□□□□ -0.26
PNKP-226ENST00000636840 IQGAP2Q13576 1575 aa13.44□□□□□ -0.26
PNKP-226ENST00000636840 TTBK1Q5TCY1 1321 aaPredicted RBP13.42□□□□□ -0.26
PNKP-226ENST00000636840 PTPRGP23470 1445 aa13.41□□□□□ -0.26
PNKP-226ENST00000636840 EHMT2Q96KQ7 1210 aa13.41□□□□□ -0.26
PNKP-226ENST00000636840 TNIKQ9UKE5 1360 aa13.4□□□□□ -0.26
PNKP-226ENST00000636840 GOLGA3Q08378 1498 aa13.39□□□□□ -0.27
PNKP-226ENST00000636840 ERCC6L2Q5T890 1561 aa13.39□□□□□ -0.27
PNKP-226ENST00000636840 TRHP20396 242 aaPredicted RBP13.37□□□□□ -0.27
PNKP-226ENST00000636840 RANGAP1P46060 587 aaPredicted RBP13.37□□□□□ -0.27
PNKP-226ENST00000636840 UGGT2Q9NYU1 1516 aa13.36□□□□□ -0.27
PNKP-226ENST00000636840 KIF21BO75037 1637 aa13.35□□□□□ -0.27
PNKP-226ENST00000636840 CTTNBP2Q8WZ74 1663 aa13.35□□□□□ -0.27
PNKP-226ENST00000636840 P3H3Q8IVL6 736 aa13.34□□□□□ -0.27
PNKP-226ENST00000636840 DISP1Q96F81 1524 aa13.32□□□□□ -0.28
PNKP-226ENST00000636840 UACAQ9BZF9 1416 aa13.29□□□□□ -0.28
PNKP-226ENST00000636840 KIAA0556O60303 1618 aa13.28□□□□□ -0.28
PNKP-226ENST00000636840 UHRF1BP1LA0JNW5 1464 aa13.23□□□□□ -0.29
PNKP-226ENST00000636840 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.21□□□□□ -0.29
PNKP-226ENST00000636840 HNRNPUL2Q1KMD3 747 aaKnown RBP13.21□□□□□ -0.29
PNKP-226ENST00000636840 EFCAB5A4FU69 1503 aa13.2□□□□□ -0.3
PNKP-226ENST00000636840 ABCC2Q92887 1545 aa13.2□□□□□ -0.3
PNKP-226ENST00000636840 FAM69CQ0P6D2 419 aa13.19□□□□□ -0.3
PNKP-226ENST00000636840 ATP1B4Q9UN42 357 aaPredicted RBP13.19□□□□□ -0.3
PNKP-226ENST00000636840 ADCY10Q96PN6 1610 aa13.19□□□□□ -0.3
PNKP-226ENST00000636840 PLB1Q6P1J6 1458 aa13.18□□□□□ -0.3
PNKP-226ENST00000636840 LOC105371045A0A1W2PR82 267 aa13.18□□□□□ -0.3
PNKP-226ENST00000636840 FHOD3Q2V2M9 1422 aa13.18□□□□□ -0.3
PNKP-226ENST00000636840 SAMD9Q5K651 1589 aa13.18□□□□□ -0.3
PNKP-226ENST00000636840 FMN1Q68DA7 1419 aa13.16□□□□□ -0.3
PNKP-226ENST00000636840 KDM5BQ9UGL1 1544 aa13.15□□□□□ -0.3
PNKP-226ENST00000636840 MAPKBP1O60336 1514 aa13.14□□□□□ -0.31
PNKP-226ENST00000636840 PLEKHD1A6NEE1 506 aa13.14□□□□□ -0.31
PNKP-226ENST00000636840 ARID3CA6NKF2 412 aa13.14□□□□□ -0.31
PNKP-226ENST00000636840 KCNH8Q96L42 1107 aa13.14□□□□□ -0.31
PNKP-226ENST00000636840 CLIP1P30622 1438 aa13.13□□□□□ -0.31
PNKP-226ENST00000636840 ASXL2Q76L83 1435 aa13.13□□□□□ -0.31
PNKP-226ENST00000636840 ABCA8O94911 1581 aa13.13□□□□□ -0.31
PNKP-226ENST00000636840 CDK11AQ9UQ88 783 aaPredicted RBP13.13□□□□□ -0.31
PNKP-226ENST00000636840 ARHGAP35Q9NRY4 1499 aa13.12□□□□□ -0.31
PNKP-226ENST00000636840 ABCC10Q5T3U5 1492 aa13.11□□□□□ -0.31
PNKP-226ENST00000636840 RAPGEF6Q8TEU7 1601 aa13.1□□□□□ -0.31
PNKP-226ENST00000636840 ATP10BO94823 1461 aa13.09□□□□□ -0.31
PNKP-226ENST00000636840 ZCCHC11Q5TAX3 1644 aaKnown RBP13.07□□□□□ -0.32
PNKP-226ENST00000636840 WDR7Q9Y4E6 1490 aa13.06□□□□□ -0.32
PNKP-226ENST00000636840 CEP162Q5TB80 1403 aa13.05□□□□□ -0.32
PNKP-226ENST00000636840 NUP153P49790 1475 aaKnown RBP13.04□□□□□ -0.32
PNKP-226ENST00000636840 EPRSP07814 1512 aaKnown RBP13.03□□□□□ -0.32
PNKP-226ENST00000636840 DIP2BQ9P265 1576 aa13.03□□□□□ -0.32
PNKP-226ENST00000636840 CASKIN1Q8WXD9 1431 aa13.01□□□□□ -0.33
PNKP-226ENST00000636840 GLI2P10070 1586 aa13.01□□□□□ -0.33
PNKP-226ENST00000636840 KIF13AQ9H1H9 1805 aa13□□□□□ -0.33
PNKP-226ENST00000636840 HECW1Q76N89 1606 aa13□□□□□ -0.33
PNKP-226ENST00000636840 CD109Q6YHK3 1445 aa13□□□□□ -0.33
PNKP-226ENST00000636840 APLP2Q06481 763 aa12.97□□□□□ -0.33
PNKP-226ENST00000636840 CCDC18Q5T9S5 1454 aa12.97□□□□□ -0.33
PNKP-226ENST00000636840 TEX14Q8IWB6 1497 aa12.97□□□□□ -0.33
PNKP-226ENST00000636840 FYCO1Q9BQS8 1478 aa12.96□□□□□ -0.34
PNKP-226ENST00000636840 TSPOAP1O95153 1857 aa12.95□□□□□ -0.34
PNKP-226ENST00000636840 CDK13Q14004 1512 aaKnown RBP12.94□□□□□ -0.34
PNKP-226ENST00000636840 PHLDB1Q86UU1 1377 aa12.94□□□□□ -0.34
PNKP-226ENST00000636840 TROQ12816 1431 aaPredicted RBP12.92□□□□□ -0.34
PNKP-226ENST00000636840 CFAP43Q8NDM7 1665 aa12.92□□□□□ -0.34
PNKP-226ENST00000636840 MAGI3Q5TCQ9 1506 aa12.91□□□□□ -0.34
PNKP-226ENST00000636840 MTUS2Q5JR59 1369 aa12.91□□□□□ -0.34
PNKP-226ENST00000636840 PCF11O94913 1555 aaKnown RBP12.9□□□□□ -0.34
PNKP-226ENST00000636840 VPS8Q8N3P4 1428 aa12.9□□□□□ -0.34
PNKP-226ENST00000636840 EFCAB2Q5VUJ9 269 aa12.9□□□□□ -0.34
PNKP-226ENST00000636840 MAP3K4Q9Y6R4 1608 aa12.9□□□□□ -0.34
PNKP-226ENST00000636840 ABCA9Q8IUA7 1624 aa12.88□□□□□ -0.35
PNKP-226ENST00000636840 KDM6BO15054 1643 aa12.85□□□□□ -0.35
PNKP-226ENST00000636840 PLCH2O75038 1416 aa12.85□□□□□ -0.35
PNKP-226ENST00000636840 NEO1Q92859 1461 aa12.85□□□□□ -0.35
PNKP-226ENST00000636840 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.84□□□□□ -0.35
PNKP-226ENST00000636840 KIF14Q15058 1648 aa12.84□□□□□ -0.35
PNKP-226ENST00000636840 CCNB3Q8WWL7 1395 aa12.82□□□□□ -0.36
PNKP-226ENST00000636840 AKNAQ7Z591 1439 aa12.82□□□□□ -0.36
PNKP-226ENST00000636840 FANCAO15360 1455 aa12.82□□□□□ -0.36
PNKP-226ENST00000636840 PPRC1Q5VV67 1664 aaKnown RBP12.82□□□□□ -0.36
PNKP-226ENST00000636840 CFDP1Q9UEE9 299 aaPredicted RBP12.81□□□□□ -0.36
PNKP-226ENST00000636840 ZNF777Q9ULD5 760 aaPredicted RBP12.81□□□□□ -0.36
PNKP-226ENST00000636840 LRRIQ1Q96JM4 1722 aa12.8□□□□□ -0.36
PNKP-226ENST00000636840 ARAP3Q8WWN8 1544 aa12.8□□□□□ -0.36
PNKP-226ENST00000636840 RAPGEF3O95398 923 aa12.8□□□□□ -0.36
PNKP-226ENST00000636840 MYT1LQ9UL68 1186 aa12.79□□□□□ -0.36
PNKP-226ENST00000636840 DENND4BO75064 1496 aaPredicted RBP12.78□□□□□ -0.36
PNKP-226ENST00000636840 MAP3K1Q13233 1512 aa12.78□□□□□ -0.36
PNKP-226ENST00000636840 TTC37Q6PGP7 1564 aa12.78□□□□□ -0.36
PNKP-226ENST00000636840 SCAPERQ9BY12 1400 aa12.78□□□□□ -0.36
PNKP-226ENST00000636840 COL17A1Q9UMD9 1497 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms