RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 PEG3Q9GZU2 1588 aa11.85□□□□□ -0.51
TCF4-249ENST00000625716 FARP1Q9Y4F1 1045 aaPredicted RBP11.84□□□□□ -0.51
TCF4-249ENST00000625716 CREBZFQ9NS37 354 aa11.83□□□□□ -0.52
TCF4-249ENST00000625716 STAG3Q9UJ98 1225 aa11.82□□□□□ -0.52
TCF4-249ENST00000625716 PROM2Q8N271 834 aa11.81□□□□□ -0.52
TCF4-249ENST00000625716 ERCC6Q03468 1493 aa11.77□□□□□ -0.52
TCF4-249ENST00000625716 WIZO95785 1651 aa11.75□□□□□ -0.53
TCF4-249ENST00000625716 GABBR2O75899 941 aa11.74□□□□□ -0.53
TCF4-249ENST00000625716 RSF1Q96T23 1441 aaPredicted RBP11.74□□□□□ -0.53
TCF4-249ENST00000625716 NESP48681 1621 aa11.71□□□□□ -0.53
TCF4-249ENST00000625716 CD44P16070 742 aaKnown RBP11.71□□□□□ -0.53
TCF4-249ENST00000625716 LAMC3Q9Y6N6 1575 aa11.67□□□□□ -0.54
TCF4-249ENST00000625716 MNX1P50219 401 aaPredicted RBP11.67□□□□□ -0.54
TCF4-249ENST00000625716 PDS5BQ9NTI5 1447 aa11.66□□□□□ -0.54
TCF4-249ENST00000625716 CADPSQ9ULU8 1353 aa11.66□□□□□ -0.54
TCF4-249ENST00000625716 CUX2O14529 1486 aa11.64□□□□□ -0.55
TCF4-249ENST00000625716 TOP2AP11388 1531 aaKnown RBP11.64□□□□□ -0.55
TCF4-249ENST00000625716 ZRANB1Q9UGI0 708 aa11.57□□□□□ -0.56
TCF4-249ENST00000625716 ZNF579Q8NAF0 562 aaKnown RBP11.56□□□□□ -0.56
TCF4-249ENST00000625716 POTEIP0CG38 1075 aa11.55□□□□□ -0.56
TCF4-249ENST00000625716 CFTRP13569 1480 aa11.54□□□□□ -0.56
TCF4-249ENST00000625716 KIF21AQ7Z4S6 1674 aa11.54□□□□□ -0.56
TCF4-249ENST00000625716 FKBP8Q14318 412 aa11.53□□□□□ -0.56
TCF4-249ENST00000625716 THOC2Q8NI27 1593 aaKnown RBP11.52□□□□□ -0.57
TCF4-249ENST00000625716 CCDC88BA6NC98 1476 aa11.51□□□□□ -0.57
TCF4-249ENST00000625716 FANCD2Q9BXW9 1451 aa11.51□□□□□ -0.57
TCF4-249ENST00000625716 CEP164Q9UPV0 1460 aa11.51□□□□□ -0.57
TCF4-249ENST00000625716 MRC2Q9UBG0 1479 aa11.51□□□□□ -0.57
TCF4-249ENST00000625716 NPM1P06748 294 aaKnown RBP eCLIP11.5□□□□□ -0.57
TCF4-249ENST00000625716 SUPT5HO00267 1087 aaKnown RBP11.47□□□□□ -0.57
TCF4-249ENST00000625716 CLCN6P51797 869 aa11.47□□□□□ -0.57
TCF4-249ENST00000625716 PHF12Q96QT6 1004 aa11.47□□□□□ -0.57
TCF4-249ENST00000625716 GALR2O43603 387 aaPredicted RBP11.44□□□□□ -0.58
TCF4-249ENST00000625716 WDR62O43379 1518 aa11.44□□□□□ -0.58
TCF4-249ENST00000625716 MIER1Q8N108 512 aa11.43□□□□□ -0.58
TCF4-249ENST00000625716 DNAJC5Q9H3Z4 198 aa11.43□□□□□ -0.58
TCF4-249ENST00000625716 PAK3O75914 559 aaPredicted RBP11.4□□□□□ -0.58
TCF4-249ENST00000625716 PRDM2Q13029 1718 aa11.38□□□□□ -0.59
TCF4-249ENST00000625716 URB2Q14146 1524 aaKnown RBP11.37□□□□□ -0.59
TCF4-249ENST00000625716 DCBLD2Q96PD2 775 aa11.36□□□□□ -0.59
TCF4-249ENST00000625716 TSPYL2Q9H2G4 693 aaPredicted RBP11.35□□□□□ -0.59
TCF4-249ENST00000625716 LHX8Q68G74 356 aa11.34□□□□□ -0.59
TCF4-249ENST00000625716 RASEFQ8IZ41 740 aa11.34□□□□□ -0.59
TCF4-249ENST00000625716 CCDC61Q9Y6R9 512 aa11.34□□□□□ -0.59
TCF4-249ENST00000625716 ABCC8Q09428 1581 aa11.33□□□□□ -0.6
TCF4-249ENST00000625716 PLCD3Q8N3E9 789 aa11.32□□□□□ -0.6
TCF4-249ENST00000625716 MS4A3Q96HJ5 214 aa11.31□□□□□ -0.6
TCF4-249ENST00000625716 TOPBP1Q92547 1522 aa11.3□□□□□ -0.6
TCF4-249ENST00000625716 PLEKHG5O94827 1062 aa11.28□□□□□ -0.6
TCF4-249ENST00000625716 DNMBPQ6XZF7 1577 aa11.28□□□□□ -0.6
TCF4-249ENST00000625716 IFT140Q96RY7 1462 aa11.27□□□□□ -0.6
TCF4-249ENST00000625716 PELP1Q8IZL8 1130 aaKnown RBP11.27□□□□□ -0.61
TCF4-249ENST00000625716 NUBP1P53384 320 aa11.26□□□□□ -0.61
TCF4-249ENST00000625716 KIF12Q96FN5 646 aa11.26□□□□□ -0.61
TCF4-249ENST00000625716 ZNF608Q9ULD9 1512 aaPredicted RBP11.2□□□□□ -0.62
TCF4-249ENST00000625716 MAP3K13O43283 966 aa11.2□□□□□ -0.62
TCF4-249ENST00000625716 ASTLQ6HA08 431 aaPredicted RBP11.2□□□□□ -0.62
TCF4-249ENST00000625716 TRPC6Q9Y210 931 aa11.2□□□□□ -0.62
TCF4-249ENST00000625716 POLA1P09884 1462 aaPredicted RBP11.19□□□□□ -0.62
TCF4-249ENST00000625716 SOGA1O94964 1423 aa11.19□□□□□ -0.62
TCF4-249ENST00000625716 ATMINO43313 823 aaPredicted RBP11.19□□□□□ -0.62
TCF4-249ENST00000625716 POTEB2H3BUK9 544 aa11.18□□□□□ -0.62
TCF4-249ENST00000625716 FBXO3Q9UK99 471 aa11.18□□□□□ -0.62
TCF4-249ENST00000625716 ZBTB47Q9UFB7 747 aaPredicted RBP11.17□□□□□ -0.62
TCF4-249ENST00000625716 CUX1P39880 1505 aa11.16□□□□□ -0.62
TCF4-249ENST00000625716 AQRO60306 1485 aaKnown RBP eCLIP11.16□□□□□ -0.62
TCF4-249ENST00000625716 FGD5Q6ZNL6 1462 aa11.16□□□□□ -0.62
TCF4-249ENST00000625716 RAD54L2Q9Y4B4 1467 aa11.16□□□□□ -0.62
TCF4-249ENST00000625716 TARBP1Q13395 1621 aaKnown RBP11.15□□□□□ -0.62
TCF4-249ENST00000625716 EIF4G3O43432 1585 aaKnown RBP11.14□□□□□ -0.63
TCF4-249ENST00000625716 TDRD9Q8NDG6 1382 aaKnown RBP11.14□□□□□ -0.63
TCF4-249ENST00000625716 ATN1P54259 1190 aaPredicted RBP11.13□□□□□ -0.63
TCF4-249ENST00000625716 VASPP50552 380 aaPredicted RBP11.12□□□□□ -0.63
TCF4-249ENST00000625716 BMP2KQ9NSY1 1161 aaPredicted RBP11.11□□□□□ -0.63
TCF4-249ENST00000625716 WRNQ14191 1432 aaPredicted RBP eCLIP11.1□□□□□ -0.63
TCF4-249ENST00000625716 WDR97A6NE52 1622 aa11.08□□□□□ -0.64
TCF4-249ENST00000625716 CHMP7Q8WUX9 453 aaPredicted RBP11.07□□□□□ -0.64
TCF4-249ENST00000625716 FAM212AQ96EL1 285 aa11.07□□□□□ -0.64
TCF4-249ENST00000625716 OTUD5Q96G74 571 aa11.07□□□□□ -0.64
TCF4-249ENST00000625716 METRNQ9UJH8 293 aa11.07□□□□□ -0.64
TCF4-249ENST00000625716 POTEJP0CG39 1038 aa11.06□□□□□ -0.64
TCF4-249ENST00000625716 TRIM41Q8WV44 630 aa11.06□□□□□ -0.64
TCF4-249ENST00000625716 SGIP1Q9BQI5 828 aa11.06□□□□□ -0.64
TCF4-249ENST00000625716 PCDHB13Q9Y5F0 798 aa11.06□□□□□ -0.64
TCF4-249ENST00000625716 GRIN2BQ13224 1484 aa11.06□□□□□ -0.64
TCF4-249ENST00000625716 C7P10643 843 aa11.05□□□□□ -0.64
TCF4-249ENST00000625716 TIE1P35590 1138 aa11.05□□□□□ -0.64
TCF4-249ENST00000625716 IFNL1Q8IU54 200 aa11.05□□□□□ -0.64
TCF4-249ENST00000625716 SLC39A7Q92504 469 aa11.05□□□□□ -0.64
TCF4-249ENST00000625716 TOP2BQ02880 1626 aa11.05□□□□□ -0.64
TCF4-249ENST00000625716 GAPVD1Q14C86 1478 aa11.05□□□□□ -0.64
TCF4-249ENST00000625716 ABCA10Q8WWZ4 1543 aa11.04□□□□□ -0.64
TCF4-249ENST00000625716 POTEFA5A3E0 1075 aa11.04□□□□□ -0.64
TCF4-249ENST00000625716 SNAPC4Q5SXM2 1469 aa11.04□□□□□ -0.64
TCF4-249ENST00000625716 DCAF8Q5TAQ9 597 aa11.03□□□□□ -0.64
TCF4-249ENST00000625716 SYNJ1O43426 1573 aa11.03□□□□□ -0.64
TCF4-249ENST00000625716 BIVM-ERCC5R4GMW8 1640 aa11.02□□□□□ -0.64
TCF4-249ENST00000625716 MAGI1Q96QZ7 1491 aaPredicted RBP11.02□□□□□ -0.65
TCF4-249ENST00000625716 TTLL13PA6NNM8 815 aa11.02□□□□□ -0.65
TCF4-249ENST00000625716 CHD1O14646 1710 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms