RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 PPP1R15AO75807 674 aaPredicted RBP13.01□□□□□ -0.33
HDAC9-229ENST00000622668 C14orf37Q86TY3 774 aa13.01□□□□□ -0.33
HDAC9-229ENST00000622668 AQRO60306 1485 aaKnown RBP eCLIP13.01□□□□□ -0.33
HDAC9-229ENST00000622668 GOLGA3Q08378 1498 aa12.99□□□□□ -0.33
HDAC9-229ENST00000622668 RAD54L2Q9Y4B4 1467 aa12.98□□□□□ -0.33
HDAC9-229ENST00000622668 RRP7BPQ9NSQ0 103 aa12.97□□□□□ -0.33
HDAC9-229ENST00000622668 FAM69CQ0P6D2 419 aa12.96□□□□□ -0.33
HDAC9-229ENST00000622668 PLEKHG5O94827 1062 aa12.95□□□□□ -0.34
HDAC9-229ENST00000622668 SCAF1Q9H7N4 1312 aaKnown RBP12.94□□□□□ -0.34
HDAC9-229ENST00000622668 MRC2Q9UBG0 1479 aa12.94□□□□□ -0.34
HDAC9-229ENST00000622668 GGT6Q6P531 493 aa12.93□□□□□ -0.34
HDAC9-229ENST00000622668 FGD5Q6ZNL6 1462 aa12.92□□□□□ -0.34
HDAC9-229ENST00000622668 PTPRGP23470 1445 aa12.92□□□□□ -0.34
HDAC9-229ENST00000622668 GAPVD1Q14C86 1478 aa12.92□□□□□ -0.34
HDAC9-229ENST00000622668 EFCAB2Q5VUJ9 269 aa12.9□□□□□ -0.34
HDAC9-229ENST00000622668 CCNB3Q8WWL7 1395 aa12.89□□□□□ -0.35
HDAC9-229ENST00000622668 CFTRP13569 1480 aa12.87□□□□□ -0.35
HDAC9-229ENST00000622668 KDM2AQ9Y2K7 1162 aa12.87□□□□□ -0.35
HDAC9-229ENST00000622668 CEP162Q5TB80 1403 aa12.86□□□□□ -0.35
HDAC9-229ENST00000622668 HMGXB3Q12766 1538 aa12.86□□□□□ -0.35
HDAC9-229ENST00000622668 SLC24A1O60721 1099 aa12.85□□□□□ -0.35
HDAC9-229ENST00000622668 RGL3Q3MIN7 710 aa12.84□□□□□ -0.35
HDAC9-229ENST00000622668 RAPGEF2Q9Y4G8 1499 aa12.82□□□□□ -0.36
HDAC9-229ENST00000622668 FHAD1B1AJZ9 1412 aa12.82□□□□□ -0.36
HDAC9-229ENST00000622668 TNIKQ9UKE5 1360 aa12.81□□□□□ -0.36
HDAC9-229ENST00000622668 IFT140Q96RY7 1462 aa12.8□□□□□ -0.36
HDAC9-229ENST00000622668 GRIN2BQ13224 1484 aa12.79□□□□□ -0.36
HDAC9-229ENST00000622668 HAP1P54257 671 aaPredicted RBP12.78□□□□□ -0.36
HDAC9-229ENST00000622668 A0A0G2JS52 829 aa12.78□□□□□ -0.36
HDAC9-229ENST00000622668 FHOD3Q2V2M9 1422 aa12.77□□□□□ -0.36
HDAC9-229ENST00000622668 IGF1RP08069 1367 aa12.76□□□□□ -0.37
HDAC9-229ENST00000622668 TOPBP1Q92547 1522 aa12.76□□□□□ -0.37
HDAC9-229ENST00000622668 KIF3BO15066 747 aa12.74□□□□□ -0.37
HDAC9-229ENST00000622668 ZBTB7CA1YPR0 619 aa12.74□□□□□ -0.37
HDAC9-229ENST00000622668 HNRNPMP52272 730 aaKnown RBP eCLIP12.74□□□□□ -0.37
HDAC9-229ENST00000622668 LMOD2Q6P5Q4 547 aa12.74□□□□□ -0.37
HDAC9-229ENST00000622668 FMN1Q68DA7 1419 aa12.73□□□□□ -0.37
HDAC9-229ENST00000622668 YTHDC1Q96MU7 727 aaKnown RBP12.73□□□□□ -0.37
HDAC9-229ENST00000622668 LAMC3Q9Y6N6 1575 aa12.72□□□□□ -0.37
HDAC9-229ENST00000622668 PRG4Q92954 1404 aaPredicted RBP12.72□□□□□ -0.37
HDAC9-229ENST00000622668 SPAG9O60271 1321 aaKnown RBP12.72□□□□□ -0.37
HDAC9-229ENST00000622668 TONSLQ96HA7 1378 aa12.72□□□□□ -0.37
HDAC9-229ENST00000622668 POLA1P09884 1462 aaPredicted RBP12.71□□□□□ -0.37
HDAC9-229ENST00000622668 SNAPC4Q5SXM2 1469 aa12.69□□□□□ -0.38
HDAC9-229ENST00000622668 KANK1Q14678 1352 aa12.69□□□□□ -0.38
HDAC9-229ENST00000622668 UNC13AQ9UPW8 1703 aa12.69□□□□□ -0.38
HDAC9-229ENST00000622668 RUSC2Q8N2Y8 1516 aa12.69□□□□□ -0.38
HDAC9-229ENST00000622668 HDGFP51858 240 aaKnown RBP12.68□□□□□ -0.38
HDAC9-229ENST00000622668 NEFMP07197 916 aa12.68□□□□□ -0.38
HDAC9-229ENST00000622668 WASHC2CQ9Y4E1 1318 aa12.66□□□□□ -0.38
HDAC9-229ENST00000622668 POGKQ9P215 609 aa12.63□□□□□ -0.39
HDAC9-229ENST00000622668 MYT1Q01538 1121 aa12.63□□□□□ -0.39
HDAC9-229ENST00000622668 KANK4Q5T7N3 995 aaPredicted RBP12.63□□□□□ -0.39
HDAC9-229ENST00000622668 TMC1Q8TDI8 760 aa12.61□□□□□ -0.39
HDAC9-229ENST00000622668 ZNF608Q9ULD9 1512 aaPredicted RBP12.59□□□□□ -0.39
HDAC9-229ENST00000622668 EID1Q9Y6B2 187 aa12.59□□□□□ -0.39
HDAC9-229ENST00000622668 DNMBPQ6XZF7 1577 aa12.58□□□□□ -0.4
HDAC9-229ENST00000622668 HRCP23327 699 aa12.57□□□□□ -0.4
HDAC9-229ENST00000622668 SAFB2Q14151 953 aaKnown RBP eCLIP12.57□□□□□ -0.4
HDAC9-229ENST00000622668 RSPH4AQ5TD94 716 aa12.56□□□□□ -0.4
HDAC9-229ENST00000622668 PELP1Q8IZL8 1130 aaKnown RBP12.56□□□□□ -0.4
HDAC9-229ENST00000622668 CCDC18Q5T9S5 1454 aa12.56□□□□□ -0.4
HDAC9-229ENST00000622668 URB2Q14146 1524 aaKnown RBP12.55□□□□□ -0.4
HDAC9-229ENST00000622668 STK26Q9P289 416 aa12.55□□□□□ -0.4
HDAC9-229ENST00000622668 CUX1P39880 1505 aa12.55□□□□□ -0.4
HDAC9-229ENST00000622668 NUTM2DQ5VT03 806 aaPredicted RBP12.55□□□□□ -0.4
HDAC9-229ENST00000622668 NEFLP07196 543 aa12.54□□□□□ -0.4
HDAC9-229ENST00000622668 VPS8Q8N3P4 1428 aa12.54□□□□□ -0.4
HDAC9-229ENST00000622668 RAPGEF3O95398 923 aa12.53□□□□□ -0.4
HDAC9-229ENST00000622668 AFAP1Q8N556 730 aa12.53□□□□□ -0.4
HDAC9-229ENST00000622668 ARHGAP35Q9NRY4 1499 aa12.53□□□□□ -0.4
HDAC9-229ENST00000622668 CENPBP07199 599 aaPredicted RBP12.51□□□□□ -0.41
HDAC9-229ENST00000622668 PKD2Q13563 968 aa12.51□□□□□ -0.41
HDAC9-229ENST00000622668 ANKRD30AQ9BXX3 1397 aa12.51□□□□□ -0.41
HDAC9-229ENST00000622668 NUP155O75694 1391 aa12.51□□□□□ -0.41
HDAC9-229ENST00000622668 SYNJ2O15056 1496 aa12.5□□□□□ -0.41
HDAC9-229ENST00000622668 DCAF11Q8TEB1 546 aa12.49□□□□□ -0.41
HDAC9-229ENST00000622668 FOXD1Q16676 465 aa12.48□□□□□ -0.41
HDAC9-229ENST00000622668 ACIN1Q9UKV3 1341 aaKnown RBP12.48□□□□□ -0.41
HDAC9-229ENST00000622668 ANP32CO43423 234 aa12.48□□□□□ -0.41
HDAC9-229ENST00000622668 SYNJ1O43426 1573 aa12.48□□□□□ -0.41
HDAC9-229ENST00000622668 SOX12O15370 315 aa12.48□□□□□ -0.41
HDAC9-229ENST00000622668 PPM1GO15355 546 aaPredicted RBP12.47□□□□□ -0.41
HDAC9-229ENST00000622668 HIRIP3Q9BW71 556 aaPredicted RBP12.47□□□□□ -0.41
HDAC9-229ENST00000622668 NPM2Q86SE8 214 aaKnown RBP12.46□□□□□ -0.41
HDAC9-229ENST00000622668 MAGI1Q96QZ7 1491 aaPredicted RBP12.45□□□□□ -0.42
HDAC9-229ENST00000622668 BCL11AQ9H165 835 aa12.45□□□□□ -0.42
HDAC9-229ENST00000622668 PRDM2Q13029 1718 aa12.45□□□□□ -0.42
HDAC9-229ENST00000622668 CARD11Q9BXL7 1154 aa12.45□□□□□ -0.42
HDAC9-229ENST00000622668 NUTM2FA1L443 756 aa12.44□□□□□ -0.42
HDAC9-229ENST00000622668 ZNF644Q9H582 1327 aaPredicted RBP12.44□□□□□ -0.42
HDAC9-229ENST00000622668 SRPK2P78362 688 aaKnown RBP12.43□□□□□ -0.42
HDAC9-229ENST00000622668 ABCA10Q8WWZ4 1543 aa12.43□□□□□ -0.42
HDAC9-229ENST00000622668 PEG3Q9GZU2 1588 aa12.43□□□□□ -0.42
HDAC9-229ENST00000622668 PAK3O75914 559 aaPredicted RBP12.43□□□□□ -0.42
HDAC9-229ENST00000622668 KIAA0586Q9BVV6 1533 aa12.43□□□□□ -0.42
HDAC9-229ENST00000622668 GRIN2AQ12879 1464 aa12.42□□□□□ -0.42
HDAC9-229ENST00000622668 CCDC9Q9Y3X0 531 aaKnown RBP12.42□□□□□ -0.42
HDAC9-229ENST00000622668 UACAQ9BZF9 1416 aa12.41□□□□□ -0.42
HDAC9-229ENST00000622668 SIN3AQ96ST3 1273 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms