RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 AQRO60306 1485 aaKnown RBP eCLIP15.8■□□□□ 0.124e-7■■■■□ 26.1
CUX1-221ENST00000622516 WDR97A6NE52 1622 aa15.79■□□□□ 0.12
CUX1-221ENST00000622516 DIEXFQ68CQ4 756 aaKnown RBP15.79■□□□□ 0.12
CUX1-221ENST00000622516 RRBP1Q9P2E9 1410 aaKnown RBP15.79■□□□□ 0.12
CUX1-221ENST00000622516 CUL7Q14999 1698 aa15.79■□□□□ 0.12
CUX1-221ENST00000622516 TIAM1Q13009 1591 aa15.79■□□□□ 0.12
CUX1-221ENST00000622516 FAM50AQ14320 339 aaKnown RBP15.78■□□□□ 0.12
CUX1-221ENST00000622516 FHAD1B1AJZ9 1412 aa15.78■□□□□ 0.12
CUX1-221ENST00000622516 PCF11O94913 1555 aaKnown RBP15.78■□□□□ 0.12
CUX1-221ENST00000622516 ABCA5Q8WWZ7 1642 aa15.77■□□□□ 0.12
CUX1-221ENST00000622516 PHLDB1Q86UU1 1377 aa15.77■□□□□ 0.11
CUX1-221ENST00000622516 LRRC9Q6ZRR7 1453 aa15.76■□□□□ 0.11
CUX1-221ENST00000622516 TARBP1Q13395 1621 aaKnown RBP15.74■□□□□ 0.11
CUX1-221ENST00000622516 DHX57Q6P158 1386 aaKnown RBP15.73■□□□□ 0.11
CUX1-221ENST00000622516 CTTNBP2Q8WZ74 1663 aa15.73■□□□□ 0.11
CUX1-221ENST00000622516 ZNF316A6NFI3 1004 aaPredicted RBP15.72■□□□□ 0.11
CUX1-221ENST00000622516 ARID3CA6NKF2 412 aa15.71■□□□□ 0.11
CUX1-221ENST00000622516 MRC2Q9UBG0 1479 aa15.7■□□□□ 0.1
CUX1-221ENST00000622516 ZNF608Q9ULD9 1512 aaPredicted RBP15.69■□□□□ 0.1
CUX1-221ENST00000622516 EFCAB5A4FU69 1503 aa15.68■□□□□ 0.1
CUX1-221ENST00000622516 CASKIN1Q8WXD9 1431 aa15.68■□□□□ 0.1
CUX1-221ENST00000622516 MAP3K1Q13233 1512 aa15.67■□□□□ 0.1
CUX1-221ENST00000622516 FMN1Q68DA7 1419 aa15.65■□□□□ 0.1
CUX1-221ENST00000622516 FYCO1Q9BQS8 1478 aa15.65■□□□□ 0.1
CUX1-221ENST00000622516 RAB3GAP2Q9H2M9 1393 aa15.65■□□□□ 0.1
CUX1-221ENST00000622516 ERCC6Q03468 1493 aa15.63■□□□□ 0.09
CUX1-221ENST00000622516 MTUS2Q5JR59 1369 aa15.63■□□□□ 0.09
CUX1-221ENST00000622516 CFAP43Q8NDM7 1665 aa15.62■□□□□ 0.09
CUX1-221ENST00000622516 SNAPC4Q5SXM2 1469 aa15.62■□□□□ 0.09
CUX1-221ENST00000622516 PBRM1Q86U86 1689 aa15.62■□□□□ 0.09
CUX1-221ENST00000622516 FBLN2P98095 1184 aa15.6■□□□□ 0.09
CUX1-221ENST00000622516 SAMD9Q5K651 1589 aa15.59■□□□□ 0.09
CUX1-221ENST00000622516 GRIN2BQ13224 1484 aa15.59■□□□□ 0.09
CUX1-221ENST00000622516 SETD5Q9C0A6 1442 aa15.56■□□□□ 0.08
CUX1-221ENST00000622516 LRRIQ1Q96JM4 1722 aa15.56■□□□□ 0.08
CUX1-221ENST00000622516 IFT140Q96RY7 1462 aa15.56■□□□□ 0.08
CUX1-221ENST00000622516 ADAMTS12P58397 1594 aa15.56■□□□□ 0.08
CUX1-221ENST00000622516 CLSPNQ9HAW4 1339 aa15.56■□□□□ 0.08
CUX1-221ENST00000622516 WDR62O43379 1518 aa15.55■□□□□ 0.08
CUX1-221ENST00000622516 NEUROD1Q13562 356 aa15.54■□□□□ 0.08
CUX1-221ENST00000622516 SIN3AQ96ST3 1273 aa15.54■□□□□ 0.08
CUX1-221ENST00000622516 IQGAP2Q13576 1575 aa15.53■□□□□ 0.08
CUX1-221ENST00000622516 SLC24A1O60721 1099 aa15.53■□□□□ 0.08
CUX1-221ENST00000622516 MIER1Q8N108 512 aa15.53■□□□□ 0.08
CUX1-221ENST00000622516 FGD6Q6ZV73 1430 aa15.51■□□□□ 0.07
CUX1-221ENST00000622516 CHMP7Q8WUX9 453 aaPredicted RBP15.51■□□□□ 0.07
CUX1-221ENST00000622516 YTHDC1Q96MU7 727 aaKnown RBP15.51■□□□□ 0.07
CUX1-221ENST00000622516 NCOA2Q15596 1464 aa15.5■□□□□ 0.07
CUX1-221ENST00000622516 CHIC2Q9UKJ5 165 aa15.48■□□□□ 0.07
CUX1-221ENST00000622516 MAGI3Q5TCQ9 1506 aa15.48■□□□□ 0.07
CUX1-221ENST00000622516 SCAF1Q9H7N4 1312 aaKnown RBP15.48■□□□□ 0.07
CUX1-221ENST00000622516 EIF4G3O43432 1585 aaKnown RBP15.48■□□□□ 0.07
CUX1-221ENST00000622516 PTPRKQ15262 1439 aa15.48■□□□□ 0.07
CUX1-221ENST00000622516 MAPKBP1O60336 1514 aa15.48■□□□□ 0.07
CUX1-221ENST00000622516 CDK13Q14004 1512 aaKnown RBP15.47■□□□□ 0.07
CUX1-221ENST00000622516 MYOM3Q5VTT5 1437 aa15.44■□□□□ 0.06
CUX1-221ENST00000622516 RRP7BPQ9NSQ0 103 aa15.44■□□□□ 0.06
CUX1-221ENST00000622516 GRIN2AQ12879 1464 aa15.44■□□□□ 0.06
CUX1-221ENST00000622516 EPRSP07814 1512 aaKnown RBP15.43■□□□□ 0.06
CUX1-221ENST00000622516 THOC2Q8NI27 1593 aaKnown RBP15.42■□□□□ 0.06
CUX1-221ENST00000622516 KIAA0586Q9BVV6 1533 aa15.42■□□□□ 0.06
CUX1-221ENST00000622516 DISP1Q96F81 1524 aa15.41■□□□□ 0.06
CUX1-221ENST00000622516 ACIN1Q9UKV3 1341 aaKnown RBP15.41■□□□□ 0.06
CUX1-221ENST00000622516 SUPT6HQ7KZ85 1726 aaKnown RBP15.4■□□□□ 0.06
CUX1-221ENST00000622516 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.4■□□□□ 0.062e-6■■□□□ 13.4
CUX1-221ENST00000622516 EHBP1L1Q8N3D4 1523 aa15.4■□□□□ 0.06
CUX1-221ENST00000622516 UGGT2Q9NYU1 1516 aa15.39■□□□□ 0.05
CUX1-221ENST00000622516 HECW1Q76N89 1606 aa15.39■□□□□ 0.05
CUX1-221ENST00000622516 CCDC18Q5T9S5 1454 aa15.38■□□□□ 0.05
CUX1-221ENST00000622516 HIRIP3Q9BW71 556 aaPredicted RBP15.37■□□□□ 0.05
CUX1-221ENST00000622516 JPH4Q96JJ6 628 aa15.36■□□□□ 0.05
CUX1-221ENST00000622516 KIAA0556O60303 1618 aa15.36■□□□□ 0.05
CUX1-221ENST00000622516 PTPN23Q9H3S7 1636 aa15.35■□□□□ 0.05
CUX1-221ENST00000622516 ZNF644Q9H582 1327 aaPredicted RBP15.35■□□□□ 0.05
CUX1-221ENST00000622516 CEP170Q5SW79 1584 aa15.35■□□□□ 0.05
CUX1-221ENST00000622516 SYNJ2O15056 1496 aa15.34■□□□□ 0.05
CUX1-221ENST00000622516 CENPBP07199 599 aaPredicted RBP15.34■□□□□ 0.05
CUX1-221ENST00000622516 MAGI1Q96QZ7 1491 aaPredicted RBP15.34■□□□□ 0.05
CUX1-221ENST00000622516 NAIPQ13075 1403 aa15.34■□□□□ 0.05
CUX1-221ENST00000622516 HFM1A2PYH4 1435 aa15.33■□□□□ 0.04
CUX1-221ENST00000622516 NUP153P49790 1475 aaKnown RBP15.33■□□□□ 0.04
CUX1-221ENST00000622516 PLB1Q6P1J6 1458 aa15.33■□□□□ 0.04
CUX1-221ENST00000622516 TRIM52Q96A61 297 aa15.33■□□□□ 0.04
CUX1-221ENST00000622516 ARHGEF11O15085 1522 aa15.32■□□□□ 0.04
CUX1-221ENST00000622516 PRG4Q92954 1404 aaPredicted RBP15.29■□□□□ 0.04
CUX1-221ENST00000622516 ZNF777Q9ULD5 760 aaPredicted RBP15.29■□□□□ 0.04
CUX1-221ENST00000622516 GTF3C3Q9Y5Q9 886 aa15.28■□□□□ 0.04
CUX1-221ENST00000622516 CDK11AQ9UQ88 783 aaPredicted RBP15.28■□□□□ 0.04
CUX1-221ENST00000622516 FOXD1Q16676 465 aa15.27■□□□□ 0.04
CUX1-221ENST00000622516 RAPGEF6Q8TEU7 1601 aa15.27■□□□□ 0.03
CUX1-221ENST00000622516 UACAQ9BZF9 1416 aa15.27■□□□□ 0.03
CUX1-221ENST00000622516 PPP1R15AO75807 674 aaPredicted RBP15.26■□□□□ 0.03
CUX1-221ENST00000622516 TONSLQ96HA7 1378 aa15.24■□□□□ 0.03
CUX1-221ENST00000622516 NUP160Q12769 1436 aa15.24■□□□□ 0.03
CUX1-221ENST00000622516 TCOF1Q13428 1488 aaKnown RBP15.24■□□□□ 0.03
CUX1-221ENST00000622516 KDM6BO15054 1643 aa15.24■□□□□ 0.03
CUX1-221ENST00000622516 CARMIL2Q6F5E8 1435 aa15.23■□□□□ 0.03
CUX1-221ENST00000622516 DDX10Q13206 875 aaKnown RBP15.23■□□□□ 0.03
CUX1-221ENST00000622516 CFDP1Q9UEE9 299 aaPredicted RBP15.23■□□□□ 0.03
CUX1-221ENST00000622516 MIA2Q96PC5 1412 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms