RNA–Protein interactions for RNA: ENST00000621708.4

PCDH15-233, Transcript of protocadherin related 15, human

APPRIS ALT2 TSL 5 BASIC

Gene PCDH15, Length 5,700 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH15-233	ENST00000621708	FANCD2	Q9BXW9	1451 aa		12.04	□□□□□ -0.48
PCDH15-233	ENST00000621708	FMN1	Q68DA7	1419 aa		12.04	□□□□□ -0.48
PCDH15-233	ENST00000621708	KCNH8	Q96L42	1107 aa		12.04	□□□□□ -0.48
PCDH15-233	ENST00000621708	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.04	□□□□□ -0.48
PCDH15-233	ENST00000621708	VPS8	Q8N3P4	1428 aa		12.03	□□□□□ -0.48
PCDH15-233	ENST00000621708	CCNB3	Q8WWL7	1395 aa		12.03	□□□□□ -0.48
PCDH15-233	ENST00000621708	RAPGEF2	Q9Y4G8	1499 aa		12.02	□□□□□ -0.49
PCDH15-233	ENST00000621708	TDRD9	Q8NDG6	1382 aa	Known RBP	11.99	□□□□□ -0.49
PCDH15-233	ENST00000621708	CLSPN	Q9HAW4	1339 aa		11.98	□□□□□ -0.49
PCDH15-233	ENST00000621708	RRP7BP	Q9NSQ0	103 aa		11.97	□□□□□ -0.49
PCDH15-233	ENST00000621708	ARHGAP35	Q9NRY4	1499 aa		11.95	□□□□□ -0.5
PCDH15-233	ENST00000621708	HMGXB3	Q12766	1538 aa		11.94	□□□□□ -0.5
PCDH15-233	ENST00000621708	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.93	□□□□□ -0.5
PCDH15-233	ENST00000621708	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
PCDH15-233	ENST00000621708	KANK1	Q14678	1352 aa		11.9	□□□□□ -0.5
PCDH15-233	ENST00000621708	CANX	P27824	592 aa	Known RBP	11.89	□□□□□ -0.51
PCDH15-233	ENST00000621708	CDCA8	Q53HL2	280 aa		11.89	□□□□□ -0.51
PCDH15-233	ENST00000621708	TIMELESS	Q9UNS1	1208 aa		11.88	□□□□□ -0.51
PCDH15-233	ENST00000621708	PPP1R15A	O75807	674 aa	Predicted RBP	11.87	□□□□□ -0.51
PCDH15-233	ENST00000621708	MYT1	Q01538	1121 aa		11.87	□□□□□ -0.51
PCDH15-233	ENST00000621708	KDM2A	Q9Y2K7	1162 aa		11.87	□□□□□ -0.51
PCDH15-233	ENST00000621708	FGD5	Q6ZNL6	1462 aa		11.86	□□□□□ -0.51
PCDH15-233	ENST00000621708	SLC24A1	O60721	1099 aa		11.86	□□□□□ -0.51
PCDH15-233	ENST00000621708	CCDC18	Q5T9S5	1454 aa		11.85	□□□□□ -0.51
PCDH15-233	ENST00000621708	CFTR	P13569	1480 aa		11.84	□□□□□ -0.51
PCDH15-233	ENST00000621708	GAPVD1	Q14C86	1478 aa		11.84	□□□□□ -0.51
PCDH15-233	ENST00000621708	RSPH4A	Q5TD94	716 aa		11.84	□□□□□ -0.51
PCDH15-233	ENST00000621708	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.83	□□□□□ -0.52
PCDH15-233	ENST00000621708	EFCAB2	Q5VUJ9	269 aa		11.83	□□□□□ -0.52
PCDH15-233	ENST00000621708	DDX10	Q13206	875 aa	Known RBP	11.83	□□□□□ -0.52
PCDH15-233	ENST00000621708	SETD5	Q9C0A6	1442 aa		11.82	□□□□□ -0.52
PCDH15-233	ENST00000621708	CC2D2A	Q9P2K1	1620 aa		11.82	□□□□□ -0.52
PCDH15-233	ENST00000621708	PLPPR3	Q6T4P5	718 aa		11.81	□□□□□ -0.52
PCDH15-233	ENST00000621708	JPH4	Q96JJ6	628 aa		11.81	□□□□□ -0.52
PCDH15-233	ENST00000621708	TMC1	Q8TDI8	760 aa		11.81	□□□□□ -0.52
PCDH15-233	ENST00000621708	HDGF	P51858	240 aa	Known RBP	11.79	□□□□□ -0.52
PCDH15-233	ENST00000621708	ANKRD30A	Q9BXX3	1397 aa		11.79	□□□□□ -0.52
PCDH15-233	ENST00000621708	WDR43	Q15061	677 aa	Known RBP eCLIP	11.79	□□□□□ -0.52
PCDH15-233	ENST00000621708	FHOD3	Q2V2M9	1422 aa		11.79	□□□□□ -0.52
PCDH15-233	ENST00000621708	MRC2	Q9UBG0	1479 aa		11.78	□□□□□ -0.52
PCDH15-233	ENST00000621708	IGF1R	P08069	1367 aa		11.76	□□□□□ -0.53
PCDH15-233	ENST00000621708	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	11.75	□□□□□ -0.53
PCDH15-233	ENST00000621708	BICRA	Q9NZM4	1560 aa		11.75	□□□□□ -0.53
PCDH15-233	ENST00000621708	GRIN2B	Q13224	1484 aa		11.75	□□□□□ -0.53
PCDH15-233	ENST00000621708	RGL3	Q3MIN7	710 aa		11.74	□□□□□ -0.53
PCDH15-233	ENST00000621708	CARD11	Q9BXL7	1154 aa		11.74	□□□□□ -0.53
PCDH15-233	ENST00000621708	PTPRG	P23470	1445 aa		11.74	□□□□□ -0.53
PCDH15-233	ENST00000621708	IFT140	Q96RY7	1462 aa		11.74	□□□□□ -0.53
PCDH15-233	ENST00000621708	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.74	□□□□□ -0.53
PCDH15-233	ENST00000621708	ERICH3	Q5RHP9	1530 aa		11.73	□□□□□ -0.53
PCDH15-233	ENST00000621708	MRS2	Q9HD23	443 aa		11.73	□□□□□ -0.53
PCDH15-233	ENST00000621708	GTF3C3	Q9Y5Q9	886 aa		11.73	□□□□□ -0.53
PCDH15-233	ENST00000621708	KANK4	Q5T7N3	995 aa	Predicted RBP	11.72	□□□□□ -0.53
PCDH15-233	ENST00000621708	RAD54L2	Q9Y4B4	1467 aa		11.72	□□□□□ -0.53
PCDH15-233	ENST00000621708	KIF21B	O75037	1637 aa		11.71	□□□□□ -0.53
PCDH15-233	ENST00000621708	FAM9B	Q8IZU0	186 aa		11.71	□□□□□ -0.53
PCDH15-233	ENST00000621708	CFAP53	Q96M91	514 aa		11.71	□□□□□ -0.53
PCDH15-233	ENST00000621708	OSCAR	Q8IYS5	282 aa		11.7	□□□□□ -0.54
PCDH15-233	ENST00000621708	RUSC2	Q8N2Y8	1516 aa		11.7	□□□□□ -0.54
PCDH15-233	ENST00000621708	TOP2B	Q02880	1626 aa		11.7	□□□□□ -0.54
PCDH15-233	ENST00000621708	RTL5	Q5HYW3	569 aa	Predicted RBP	11.69	□□□□□ -0.54
PCDH15-233	ENST00000621708	LAMC3	Q9Y6N6	1575 aa		11.69	□□□□□ -0.54
PCDH15-233	ENST00000621708	TRH	P20396	242 aa	Predicted RBP	11.69	□□□□□ -0.54
PCDH15-233	ENST00000621708	KNSTRN	Q9Y448	316 aa		11.69	□□□□□ -0.54
PCDH15-233	ENST00000621708	DNMBP	Q6XZF7	1577 aa		11.68	□□□□□ -0.54
PCDH15-233	ENST00000621708	C14orf37	Q86TY3	774 aa		11.67	□□□□□ -0.54
PCDH15-233	ENST00000621708	PEG3	Q9GZU2	1588 aa		11.67	□□□□□ -0.54
PCDH15-233	ENST00000621708	CUX1	P39880	1505 aa		11.67	□□□□□ -0.54
PCDH15-233	ENST00000621708	TOPBP1	Q92547	1522 aa		11.67	□□□□□ -0.54
PCDH15-233	ENST00000621708	POGK	Q9P215	609 aa		11.66	□□□□□ -0.54
PCDH15-233	ENST00000621708	SPAG9	O60271	1321 aa	Known RBP	11.66	□□□□□ -0.54
PCDH15-233	ENST00000621708	TMF1	P82094	1093 aa		11.65	□□□□□ -0.54
PCDH15-233	ENST00000621708	RAB3GAP2	Q9H2M9	1393 aa		11.65	□□□□□ -0.54
PCDH15-233	ENST00000621708	PKD2	Q13563	968 aa		11.64	□□□□□ -0.55
PCDH15-233	ENST00000621708	NUP155	O75694	1391 aa		11.64	□□□□□ -0.55
PCDH15-233	ENST00000621708	EFCAB5	A4FU69	1503 aa		11.64	□□□□□ -0.55
PCDH15-233	ENST00000621708	SYNJ1	O43426	1573 aa		11.64	□□□□□ -0.55
PCDH15-233	ENST00000621708	SIN3A	Q96ST3	1273 aa		11.63	□□□□□ -0.55
PCDH15-233	ENST00000621708	AQR	O60306	1485 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
PCDH15-233	ENST00000621708	DCAF11	Q8TEB1	546 aa		11.62	□□□□□ -0.55
PCDH15-233	ENST00000621708	MPHOSPH9	Q99550	1183 aa		11.62	□□□□□ -0.55
PCDH15-233	ENST00000621708	GGT6	Q6P531	493 aa		11.61	□□□□□ -0.55
PCDH15-233	ENST00000621708	CASKIN1	Q8WXD9	1431 aa		11.61	□□□□□ -0.55
PCDH15-233	ENST00000621708	NES	P48681	1621 aa		11.6	□□□□□ -0.55
PCDH15-233	ENST00000621708	NUDC	Q9Y266	331 aa		11.6	□□□□□ -0.55
PCDH15-233	ENST00000621708	POLA1	P09884	1462 aa	Predicted RBP	11.6	□□□□□ -0.55
PCDH15-233	ENST00000621708	PNN	Q9H307	717 aa	Known RBP	11.59	□□□□□ -0.55
PCDH15-233	ENST00000621708	EIF3A	Q14152	1382 aa	Known RBP	11.59	□□□□□ -0.55
PCDH15-233	ENST00000621708	MYOM3	Q5VTT5	1437 aa		11.59	□□□□□ -0.55
PCDH15-233	ENST00000621708	FYCO1	Q9BQS8	1478 aa		11.58	□□□□□ -0.56
PCDH15-233	ENST00000621708	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.58	□□□□□ -0.56
PCDH15-233	ENST00000621708	ANP32A	P39687	249 aa	Known RBP	11.58	□□□□□ -0.56
PCDH15-233	ENST00000621708	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.58	□□□□□ -0.56
PCDH15-233	ENST00000621708	MIER1	Q8N108	512 aa		11.57	□□□□□ -0.56
PCDH15-233	ENST00000621708	SCAF1	Q9H7N4	1312 aa	Known RBP	11.57	□□□□□ -0.56
PCDH15-233	ENST00000621708	KIF3B	O15066	747 aa		11.57	□□□□□ -0.56
PCDH15-233	ENST00000621708	UACA	Q9BZF9	1416 aa		11.57	□□□□□ -0.56
PCDH15-233	ENST00000621708	FKBP8	Q14318	412 aa		11.57	□□□□□ -0.56
PCDH15-233	ENST00000621708	UPF2	Q9HAU5	1272 aa	Known RBP	11.57	□□□□□ -0.56
PCDH15-233	ENST00000621708	PRX	Q9BXM0	1461 aa		11.56	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 138 ms