RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 EIF5BO60841 1220 aaKnown RBP15.29■□□□□ 0.04
CDH1-214ENST00000621016 ARID3CA6NKF2 412 aa15.28■□□□□ 0.04
CDH1-214ENST00000621016 DDX10Q13206 875 aaKnown RBP15.28■□□□□ 0.04
CDH1-214ENST00000621016 CARMIL1Q5VZK9 1371 aa15.25■□□□□ 0.03
CDH1-214ENST00000621016 IGF1RP08069 1367 aa15.24■□□□□ 0.03
CDH1-214ENST00000621016 NCAPD3P42695 1498 aa15.24■□□□□ 0.03
CDH1-214ENST00000621016 ARHGAP35Q9NRY4 1499 aa15.23■□□□□ 0.03
CDH1-214ENST00000621016 RAB3GAP2Q9H2M9 1393 aa15.23■□□□□ 0.03
CDH1-214ENST00000621016 SLC24A1O60721 1099 aa15.21■□□□□ 0.03
CDH1-214ENST00000621016 DEKP35659 375 aaKnown RBP15.19■□□□□ 0.02
CDH1-214ENST00000621016 CFTRP13569 1480 aa15.18■□□□□ 0.02
CDH1-214ENST00000621016 RBM19Q9Y4C8 960 aaKnown RBP15.17■□□□□ 0.02
CDH1-214ENST00000621016 CADPSQ9ULU8 1353 aa15.16■□□□□ 0.02
CDH1-214ENST00000621016 ERICH3Q5RHP9 1530 aa15.15■□□□□ 0.02
CDH1-214ENST00000621016 PHLDB1Q86UU1 1377 aa15.14■□□□□ 0.01
CDH1-214ENST00000621016 CLSPNQ9HAW4 1339 aa15.14■□□□□ 0.01
CDH1-214ENST00000621016 MSH5O43196 834 aa15.14■□□□□ 0.01
CDH1-214ENST00000621016 FHOD3Q2V2M9 1422 aa15.13■□□□□ 0.01
CDH1-214ENST00000621016 UBE2Q2Q8WVN8 375 aa15.13■□□□□ 0.01
CDH1-214ENST00000621016 CHIC2Q9UKJ5 165 aa15.13■□□□□ 0.01
CDH1-214ENST00000621016 FGD5Q6ZNL6 1462 aa15.13■□□□□ 0.01
CDH1-214ENST00000621016 RAD54L2Q9Y4B4 1467 aa15.13■□□□□ 0.01
CDH1-214ENST00000621016 TRIM52Q96A61 297 aa15.13■□□□□ 0.01
CDH1-214ENST00000621016 BIVM-ERCC5R4GMW8 1640 aa15.12■□□□□ 0.01
CDH1-214ENST00000621016 DNAJC5BQ9UF47 199 aa15.12■□□□□ 0.01
CDH1-214ENST00000621016 RRBP1Q9P2E9 1410 aaKnown RBP15.11■□□□□ 0.01
CDH1-214ENST00000621016 CNGB1Q14028 1251 aaPredicted RBP15.1■□□□□ 0.01
CDH1-214ENST00000621016 TDRD9Q8NDG6 1382 aaKnown RBP15.08■□□□□ 0
CDH1-214ENST00000621016 SETD5Q9C0A6 1442 aa15.07■□□□□ 0
CDH1-214ENST00000621016 HMGXB3Q12766 1538 aa15.07■□□□□ 0
CDH1-214ENST00000621016 NESP48681 1621 aa15.06■□□□□ 0
CDH1-214ENST00000621016 NBR1Q14596 966 aa15.06■□□□□ 0
CDH1-214ENST00000621016 RRP7BPQ9NSQ0 103 aa15.05■□□□□ 0
CDH1-214ENST00000621016 FKBP8Q14318 412 aa15.03■□□□□ -0
CDH1-214ENST00000621016 IL27Q8NEV9 243 aa15.03■□□□□ -0
CDH1-214ENST00000621016 PKNOX2Q96KN3 472 aa15.03■□□□□ -0
CDH1-214ENST00000621016 FANCD2Q9BXW9 1451 aa15.02■□□□□ -0
CDH1-214ENST00000621016 MTUS2Q5JR59 1369 aa15.02□□□□□ -0.01
CDH1-214ENST00000621016 LRRC9Q6ZRR7 1453 aa15.01□□□□□ -0.01
CDH1-214ENST00000621016 ANP32CO43423 234 aa14.97□□□□□ -0.01
CDH1-214ENST00000621016 PODXL2Q9NZ53 605 aa14.97□□□□□ -0.01
CDH1-214ENST00000621016 TONSLQ96HA7 1378 aa14.97□□□□□ -0.01
CDH1-214ENST00000621016 FOXD1Q16676 465 aa14.97□□□□□ -0.01
CDH1-214ENST00000621016 FHAD1B1AJZ9 1412 aa14.97□□□□□ -0.01
CDH1-214ENST00000621016 PPP1R15AO75807 674 aaPredicted RBP14.95□□□□□ -0.02
CDH1-214ENST00000621016 TIAM1Q13009 1591 aa14.95□□□□□ -0.02
CDH1-214ENST00000621016 WDR97A6NE52 1622 aa14.95□□□□□ -0.02
CDH1-214ENST00000621016 MAPKBP1O60336 1514 aa14.94□□□□□ -0.02
CDH1-214ENST00000621016 IRX6P78412 446 aaPredicted RBP14.94□□□□□ -0.02
CDH1-214ENST00000621016 POLR3GLQ9BT43 218 aa14.92□□□□□ -0.02
CDH1-214ENST00000621016 CC2D2AQ9P2K1 1620 aa14.92□□□□□ -0.02
CDH1-214ENST00000621016 SENP3-EIF4A1A0A087X0R7 540 aa14.91□□□□□ -0.02
CDH1-214ENST00000621016 NEFLP07196 543 aa14.91□□□□□ -0.02
CDH1-214ENST00000621016 POLA1P09884 1462 aaPredicted RBP14.9□□□□□ -0.02
CDH1-214ENST00000621016 PCF11O94913 1555 aaKnown RBP14.89□□□□□ -0.03
CDH1-214ENST00000621016 FBLN2P98095 1184 aa14.86□□□□□ -0.03
CDH1-214ENST00000621016 ZNF326Q5BKZ1 582 aaKnown RBP14.86□□□□□ -0.03
CDH1-214ENST00000621016 HNRNPUQ00839 825 aaKnown RBP eCLIP14.86□□□□□ -0.03
CDH1-214ENST00000621016 TIMELESSQ9UNS1 1208 aa14.86□□□□□ -0.03
CDH1-214ENST00000621016 TOPBP1Q92547 1522 aa14.85□□□□□ -0.03
CDH1-214ENST00000621016 PTPRKQ15262 1439 aa14.83□□□□□ -0.04
CDH1-214ENST00000621016 ZNF777Q9ULD5 760 aaPredicted RBP14.83□□□□□ -0.04
CDH1-214ENST00000621016 FGD6Q6ZV73 1430 aa14.82□□□□□ -0.04
CDH1-214ENST00000621016 CASKIN1Q8WXD9 1431 aa14.8□□□□□ -0.04
CDH1-214ENST00000621016 FAM9BQ8IZU0 186 aa14.79□□□□□ -0.04
CDH1-214ENST00000621016 FMN1Q68DA7 1419 aa14.79□□□□□ -0.04
CDH1-214ENST00000621016 CCDC18Q5T9S5 1454 aa14.79□□□□□ -0.04
CDH1-214ENST00000621016 HSPA5P11021 654 aaKnown RBP14.78□□□□□ -0.04
CDH1-214ENST00000621016 ZNF644Q9H582 1327 aaPredicted RBP14.77□□□□□ -0.05
CDH1-214ENST00000621016 ABCA10Q8WWZ4 1543 aa14.76□□□□□ -0.05
CDH1-214ENST00000621016 GAPVD1Q14C86 1478 aa14.75□□□□□ -0.05
CDH1-214ENST00000621016 AQRO60306 1485 aaKnown RBP eCLIP14.75□□□□□ -0.05
CDH1-214ENST00000621016 A0A0U1RQG5 324 aaPredicted RBP14.74□□□□□ -0.05
CDH1-214ENST00000621016 FYCO1Q9BQS8 1478 aa14.74□□□□□ -0.05
CDH1-214ENST00000621016 L3MBTL2Q969R5 705 aa14.74□□□□□ -0.05
CDH1-214ENST00000621016 URB2Q14146 1524 aaKnown RBP14.74□□□□□ -0.05
CDH1-214ENST00000621016 NCOA2Q15596 1464 aa14.74□□□□□ -0.05
CDH1-214ENST00000621016 DNMBPQ6XZF7 1577 aa14.73□□□□□ -0.05
CDH1-214ENST00000621016 CCDC184Q52MB2 194 aa14.73□□□□□ -0.05
CDH1-214ENST00000621016 MPHOSPH9Q99550 1183 aa14.73□□□□□ -0.05
CDH1-214ENST00000621016 MAP3K1Q13233 1512 aa14.72□□□□□ -0.05
CDH1-214ENST00000621016 SLC4A1APQ9BWU0 796 aaKnown RBP14.71□□□□□ -0.05
CDH1-214ENST00000621016 EIF4G2P78344 907 aaKnown RBP eCLIP14.71□□□□□ -0.06
CDH1-214ENST00000621016 NAIPQ13075 1403 aa14.69□□□□□ -0.06
CDH1-214ENST00000621016 MYOM3Q5VTT5 1437 aa14.69□□□□□ -0.06
CDH1-214ENST00000621016 WASHC2AQ641Q2 1341 aa14.69□□□□□ -0.06
CDH1-214ENST00000621016 ERICH6BQ5W0A0 696 aa14.69□□□□□ -0.06
CDH1-214ENST00000621016 AEBP2Q6ZN18 517 aaPredicted RBP14.68□□□□□ -0.06
CDH1-214ENST00000621016 C11orf95C9JLR9 678 aaPredicted RBP14.68□□□□□ -0.06
CDH1-214ENST00000621016 CCER2I3L3R5 266 aa14.68□□□□□ -0.06
CDH1-214ENST00000621016 DAXXQ9UER7 740 aaPredicted RBP14.68□□□□□ -0.06
CDH1-214ENST00000621016 UACAQ9BZF9 1416 aa14.68□□□□□ -0.06
CDH1-214ENST00000621016 PDS5BQ9NTI5 1447 aa14.67□□□□□ -0.06
CDH1-214ENST00000621016 MRS2Q9HD23 443 aa14.67□□□□□ -0.06
CDH1-214ENST00000621016 HFM1A2PYH4 1435 aa14.66□□□□□ -0.06
CDH1-214ENST00000621016 VSIG10Q8N0Z9 540 aa14.66□□□□□ -0.06
CDH1-214ENST00000621016 SNAPC4Q5SXM2 1469 aa14.64□□□□□ -0.07
CDH1-214ENST00000621016 RTL5Q5HYW3 569 aaPredicted RBP14.63□□□□□ -0.07
CDH1-214ENST00000621016 KDM2AQ9Y2K7 1162 aa14.63□□□□□ -0.07
CDH1-214ENST00000621016 EFCAB5A4FU69 1503 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 129.4 ms