RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 FAM9AQ8IZU1 332 aaPredicted RBP32.75■■■□□ 2.83
UPF3A-211ENST00000618700 RAPGEF2Q9Y4G8 1499 aa32.74■■■□□ 2.83
UPF3A-211ENST00000618700 NUP160Q12769 1436 aa32.69■■■□□ 2.82
UPF3A-211ENST00000618700 CEP170Q5SW79 1584 aa32.67■■■□□ 2.82
UPF3A-211ENST00000618700 PIAS4Q8N2W9 510 aaPredicted RBP32.66■■■□□ 2.82
UPF3A-211ENST00000618700 KIF21BO75037 1637 aa32.63■■■□□ 2.81
UPF3A-211ENST00000618700 CLASP1Q7Z460 1538 aa32.62■■■□□ 2.81
UPF3A-211ENST00000618700 KIAA0586Q9BVV6 1533 aa32.48■■■□□ 2.79
UPF3A-211ENST00000618700 RIMBP3CA6NJZ7 1639 aa32.48■■■□□ 2.79
UPF3A-211ENST00000618700 RIMBP3BA6NNM3 1639 aa32.48■■■□□ 2.79
UPF3A-211ENST00000618700 RIMBP3Q9UFD9 1639 aa32.48■■■□□ 2.79
UPF3A-211ENST00000618700 GOLGA3Q08378 1498 aa32.45■■■□□ 2.79
UPF3A-211ENST00000618700 CTTNBP2Q8WZ74 1663 aa32.42■■■□□ 2.78
UPF3A-211ENST00000618700 ARHGEF11O15085 1522 aa32.41■■■□□ 2.78
UPF3A-211ENST00000618700 IQGAP2Q13576 1575 aa32.4■■■□□ 2.78
UPF3A-211ENST00000618700 SHROOM2Q13796 1616 aa32.4■■■□□ 2.78
UPF3A-211ENST00000618700 JPH4Q96JJ6 628 aa32.26■■■□□ 2.75
UPF3A-211ENST00000618700 EHMT2Q96KQ7 1210 aa32.25■■■□□ 2.75
UPF3A-211ENST00000618700 UGGT2Q9NYU1 1516 aa32.25■■■□□ 2.75
UPF3A-211ENST00000618700 PRG4Q92954 1404 aaPredicted RBP32.2■■■□□ 2.75
UPF3A-211ENST00000618700 UBTFP17480 764 aaKnown RBP32.2■■■□□ 2.75
UPF3A-211ENST00000618700 ERCC6L2Q5T890 1561 aa32.19■■■□□ 2.74
UPF3A-211ENST00000618700 ARAP1Q96P48 1450 aa32.15■■■□□ 2.74
UPF3A-211ENST00000618700 DISP1Q96F81 1524 aa32.14■■■□□ 2.74
UPF3A-211ENST00000618700 TNIKQ9UKE5 1360 aa32.11■■■□□ 2.73
UPF3A-211ENST00000618700 KIAA0556O60303 1618 aa32.09■■■□□ 2.73
UPF3A-211ENST00000618700 CARMIL2Q6F5E8 1435 aa32.07■■■□□ 2.72
UPF3A-211ENST00000618700 SAMD9Q5K651 1589 aa32.07■■■□□ 2.72
UPF3A-211ENST00000618700 MSH5O43196 834 aa32.06■■■□□ 2.72
UPF3A-211ENST00000618700 LOC105371045A0A1W2PR82 267 aa32.04■■■□□ 2.72
UPF3A-211ENST00000618700 EFCAB5A4FU69 1503 aa32■■■□□ 2.71
UPF3A-211ENST00000618700 CYB5RLQ6IPT4 315 aa31.98■■■□□ 2.71
UPF3A-211ENST00000618700 RANGAP1P46060 587 aaPredicted RBP31.92■■■□□ 2.7
UPF3A-211ENST00000618700 ARHGAP35Q9NRY4 1499 aa31.91■■■□□ 2.7
UPF3A-211ENST00000618700 PTPRGP23470 1445 aa31.87■■■□□ 2.69
UPF3A-211ENST00000618700 CLIP1P30622 1438 aa31.86■■■□□ 2.69
UPF3A-211ENST00000618700 CEP162Q5TB80 1403 aa31.86■■■□□ 2.69
UPF3A-211ENST00000618700 FHOD3Q2V2M9 1422 aa31.85■■■□□ 2.69
UPF3A-211ENST00000618700 P3H3Q8IVL6 736 aa31.83■■■□□ 2.69
UPF3A-211ENST00000618700 TTBK1Q5TCY1 1321 aaPredicted RBP31.73■■■□□ 2.67
UPF3A-211ENST00000618700 ABCA8O94911 1581 aa31.71■■■□□ 2.67
UPF3A-211ENST00000618700 UACAQ9BZF9 1416 aa31.7■■■□□ 2.67
UPF3A-211ENST00000618700 ADCY10Q96PN6 1610 aa31.7■■■□□ 2.66
UPF3A-211ENST00000618700 PLB1Q6P1J6 1458 aa31.69■■■□□ 2.66
UPF3A-211ENST00000618700 UHRF1BP1LA0JNW5 1464 aa31.68■■■□□ 2.66
UPF3A-211ENST00000618700 ABCC2Q92887 1545 aa31.67■■■□□ 2.66
UPF3A-211ENST00000618700 FMN1Q68DA7 1419 aa31.66■■■□□ 2.66
UPF3A-211ENST00000618700 RAPGEF6Q8TEU7 1601 aa31.61■■■□□ 2.65
UPF3A-211ENST00000618700 KDM5BQ9UGL1 1544 aa31.53■■■□□ 2.64
UPF3A-211ENST00000618700 NUP153P49790 1475 aaKnown RBP31.52■■■□□ 2.64
UPF3A-211ENST00000618700 PCF11O94913 1555 aaKnown RBP31.51■■■□□ 2.64
UPF3A-211ENST00000618700 HECW1Q76N89 1606 aa31.49■■■□□ 2.63
UPF3A-211ENST00000618700 CASKIN1Q8WXD9 1431 aa31.49■■■□□ 2.63
UPF3A-211ENST00000618700 FYCO1Q9BQS8 1478 aa31.46■■■□□ 2.63
UPF3A-211ENST00000618700 VPS8Q8N3P4 1428 aa31.46■■■□□ 2.63
UPF3A-211ENST00000618700 ZCCHC11Q5TAX3 1644 aaKnown RBP31.46■■■□□ 2.63
UPF3A-211ENST00000618700 ATP10BO94823 1461 aa31.41■■■□□ 2.62
UPF3A-211ENST00000618700 MAPKBP1O60336 1514 aa31.4■■■□□ 2.62
UPF3A-211ENST00000618700 NPM1P06748 294 aaKnown RBP eCLIP31.38■■■□□ 2.61
UPF3A-211ENST00000618700 LRRIQ1Q96JM4 1722 aa31.36■■■□□ 2.61
UPF3A-211ENST00000618700 EPRSP07814 1512 aaKnown RBP31.36■■■□□ 2.61
UPF3A-211ENST00000618700 TRHP20396 242 aaPredicted RBP31.36■■■□□ 2.61
UPF3A-211ENST00000618700 CDK13Q14004 1512 aaKnown RBP31.34■■■□□ 2.61
UPF3A-211ENST00000618700 ARID3CA6NKF2 412 aa31.32■■■□□ 2.6
UPF3A-211ENST00000618700 CCDC18Q5T9S5 1454 aa31.31■■■□□ 2.6
UPF3A-211ENST00000618700 ASXL2Q76L83 1435 aa31.3■■■□□ 2.6
UPF3A-211ENST00000618700 ATP1B4Q9UN42 357 aaPredicted RBP31.28■■■□□ 2.6
UPF3A-211ENST00000618700 WDR7Q9Y4E6 1490 aa31.24■■■□□ 2.59
UPF3A-211ENST00000618700 KIF13AQ9H1H9 1805 aa31.21■■■□□ 2.59
UPF3A-211ENST00000618700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.18■■■□□ 2.58
UPF3A-211ENST00000618700 HNRNPUL2Q1KMD3 747 aaKnown RBP31.18■■■□□ 2.58
UPF3A-211ENST00000618700 CFAP43Q8NDM7 1665 aa31.18■■■□□ 2.58
UPF3A-211ENST00000618700 ABCC10Q5T3U5 1492 aa31.16■■■□□ 2.58
UPF3A-211ENST00000618700 DIP2BQ9P265 1576 aa31.15■■■□□ 2.58
UPF3A-211ENST00000618700 TIAM1Q13009 1591 aa31.14■■■□□ 2.58
UPF3A-211ENST00000618700 MAP3K1Q13233 1512 aa31.14■■■□□ 2.57
UPF3A-211ENST00000618700 MAGI3Q5TCQ9 1506 aa31.13■■■□□ 2.57
UPF3A-211ENST00000618700 PLEKHD1A6NEE1 506 aa31.11■■■□□ 2.57
UPF3A-211ENST00000618700 CDK11AQ9UQ88 783 aaPredicted RBP31.1■■■□□ 2.57
UPF3A-211ENST00000618700 TROQ12816 1431 aaPredicted RBP31.09■■■□□ 2.57
UPF3A-211ENST00000618700 GLI2P10070 1586 aa31.08■■■□□ 2.57
UPF3A-211ENST00000618700 EHBP1L1Q8N3D4 1523 aa31.02■■■□□ 2.56
UPF3A-211ENST00000618700 KIF14Q15058 1648 aa30.99■■■□□ 2.55
UPF3A-211ENST00000618700 KCNH8Q96L42 1107 aa30.99■■■□□ 2.55
UPF3A-211ENST00000618700 MTUS2Q5JR59 1369 aa30.99■■■□□ 2.55
UPF3A-211ENST00000618700 ABCA9Q8IUA7 1624 aa30.98■■■□□ 2.55
UPF3A-211ENST00000618700 LRRC9Q6ZRR7 1453 aa30.98■■■□□ 2.55
UPF3A-211ENST00000618700 FAM69CQ0P6D2 419 aa30.98■■■□□ 2.55
UPF3A-211ENST00000618700 MAP3K4Q9Y6R4 1608 aa30.97■■■□□ 2.55
UPF3A-211ENST00000618700 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.95■■■□□ 2.55
UPF3A-211ENST00000618700 TTC37Q6PGP7 1564 aa30.94■■■□□ 2.54
UPF3A-211ENST00000618700 APLP2Q06481 763 aa30.93■■■□□ 2.54
UPF3A-211ENST00000618700 KANK4Q5T7N3 995 aaPredicted RBP30.9■■■□□ 2.54
UPF3A-211ENST00000618700 SUPT6HQ7KZ85 1726 aaKnown RBP30.85■■■□□ 2.53
UPF3A-211ENST00000618700 CD109Q6YHK3 1445 aa30.85■■■□□ 2.53
UPF3A-211ENST00000618700 PPRC1Q5VV67 1664 aaKnown RBP30.84■■■□□ 2.53
UPF3A-211ENST00000618700 TSPOAP1O95153 1857 aa30.82■■■□□ 2.53
UPF3A-211ENST00000618700 NCOA2Q15596 1464 aa30.81■■■□□ 2.52
UPF3A-211ENST00000618700 MYO5CQ9NQX4 1742 aa30.78■■■□□ 2.52
UPF3A-211ENST00000618700 ARAP3Q8WWN8 1544 aa30.77■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms