RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 WDR97A6NE52 1622 aa18.47■□□□□ 0.55
CIITA-212ENST00000618207 CUL7Q14999 1698 aa18.47■□□□□ 0.55
CIITA-212ENST00000618207 FAM50AQ14320 339 aaKnown RBP18.45■□□□□ 0.54
CIITA-212ENST00000618207 CCNB3Q8WWL7 1395 aa18.45■□□□□ 0.54
CIITA-212ENST00000618207 ABCA5Q8WWZ7 1642 aa18.44■□□□□ 0.54
CIITA-212ENST00000618207 FHAD1B1AJZ9 1412 aa18.44■□□□□ 0.54
CIITA-212ENST00000618207 PCF11O94913 1555 aaKnown RBP18.44■□□□□ 0.54
CIITA-212ENST00000618207 TIAM1Q13009 1591 aa18.44■□□□□ 0.54
CIITA-212ENST00000618207 CTTNBP2Q8WZ74 1663 aa18.41■□□□□ 0.54
CIITA-212ENST00000618207 RRBP1Q9P2E9 1410 aaKnown RBP18.41■□□□□ 0.54
CIITA-212ENST00000618207 TARBP1Q13395 1621 aaKnown RBP18.4■□□□□ 0.54
CIITA-212ENST00000618207 DIEXFQ68CQ4 756 aaKnown RBP18.39■□□□□ 0.53
CIITA-212ENST00000618207 LRRC9Q6ZRR7 1453 aa18.39■□□□□ 0.53
CIITA-212ENST00000618207 ARID3CA6NKF2 412 aa18.39■□□□□ 0.53
CIITA-212ENST00000618207 MRC2Q9UBG0 1479 aa18.39■□□□□ 0.53
CIITA-212ENST00000618207 PHLDB1Q86UU1 1377 aa18.38■□□□□ 0.53
CIITA-212ENST00000618207 ZNF608Q9ULD9 1512 aaPredicted RBP18.35■□□□□ 0.53
CIITA-212ENST00000618207 ERCC6Q03468 1493 aa18.35■□□□□ 0.53
CIITA-212ENST00000618207 DHX57Q6P158 1386 aaKnown RBP18.33■□□□□ 0.52
CIITA-212ENST00000618207 EFCAB5A4FU69 1503 aa18.32■□□□□ 0.52
CIITA-212ENST00000618207 ZNF316A6NFI3 1004 aaPredicted RBP18.32■□□□□ 0.52
CIITA-212ENST00000618207 FMN1Q68DA7 1419 aa18.3■□□□□ 0.52
CIITA-212ENST00000618207 CASKIN1Q8WXD9 1431 aa18.3■□□□□ 0.52
CIITA-212ENST00000618207 PBRM1Q86U86 1689 aa18.29■□□□□ 0.52
CIITA-212ENST00000618207 FBLN2P98095 1184 aa18.29■□□□□ 0.52
CIITA-212ENST00000618207 FYCO1Q9BQS8 1478 aa18.29■□□□□ 0.52
CIITA-212ENST00000618207 MTUS2Q5JR59 1369 aa18.28■□□□□ 0.52
CIITA-212ENST00000618207 MAP3K1Q13233 1512 aa18.28■□□□□ 0.52
CIITA-212ENST00000618207 CFAP43Q8NDM7 1665 aa18.26■□□□□ 0.51
CIITA-212ENST00000618207 RAB3GAP2Q9H2M9 1393 aa18.26■□□□□ 0.51
CIITA-212ENST00000618207 GRIN2BQ13224 1484 aa18.24■□□□□ 0.51
CIITA-212ENST00000618207 SNAPC4Q5SXM2 1469 aa18.23■□□□□ 0.51
CIITA-212ENST00000618207 IFT140Q96RY7 1462 aa18.21■□□□□ 0.51
CIITA-212ENST00000618207 SAMD9Q5K651 1589 aa18.21■□□□□ 0.51
CIITA-212ENST00000618207 ADAMTS12P58397 1594 aa18.2■□□□□ 0.5
CIITA-212ENST00000618207 WDR62O43379 1518 aa18.19■□□□□ 0.5
CIITA-212ENST00000618207 LRRIQ1Q96JM4 1722 aa18.18■□□□□ 0.5
CIITA-212ENST00000618207 CHMP7Q8WUX9 453 aaPredicted RBP18.17■□□□□ 0.5
CIITA-212ENST00000618207 IQGAP2Q13576 1575 aa18.17■□□□□ 0.5
CIITA-212ENST00000618207 SETD5Q9C0A6 1442 aa18.16■□□□□ 0.5
CIITA-212ENST00000618207 NEUROD1Q13562 356 aa18.16■□□□□ 0.5
CIITA-212ENST00000618207 EIF4G3O43432 1585 aaKnown RBP18.13■□□□□ 0.49
CIITA-212ENST00000618207 CLSPNQ9HAW4 1339 aa18.13■□□□□ 0.49
CIITA-212ENST00000618207 SIN3AQ96ST3 1273 aa18.13■□□□□ 0.49
CIITA-212ENST00000618207 FGD6Q6ZV73 1430 aa18.12■□□□□ 0.49
CIITA-212ENST00000618207 CHIC2Q9UKJ5 165 aa18.1■□□□□ 0.49
CIITA-212ENST00000618207 NCOA2Q15596 1464 aa18.1■□□□□ 0.49
CIITA-212ENST00000618207 CDK13Q14004 1512 aaKnown RBP18.09■□□□□ 0.49
CIITA-212ENST00000618207 YTHDC1Q96MU7 727 aaKnown RBP18.09■□□□□ 0.49
CIITA-212ENST00000618207 MIER1Q8N108 512 aa18.07■□□□□ 0.48
CIITA-212ENST00000618207 MAGI3Q5TCQ9 1506 aa18.07■□□□□ 0.48
CIITA-212ENST00000618207 THOC2Q8NI27 1593 aaKnown RBP18.06■□□□□ 0.48
CIITA-212ENST00000618207 GRIN2AQ12879 1464 aa18.06■□□□□ 0.48
CIITA-212ENST00000618207 RRP7BPQ9NSQ0 103 aa18.04■□□□□ 0.48
CIITA-212ENST00000618207 PTPRKQ15262 1439 aa18.03■□□□□ 0.48
CIITA-212ENST00000618207 MYOM3Q5VTT5 1437 aa18.03■□□□□ 0.48
CIITA-212ENST00000618207 EPRSP07814 1512 aaKnown RBP18.03■□□□□ 0.48
CIITA-212ENST00000618207 MAPKBP1O60336 1514 aa18.03■□□□□ 0.48
CIITA-212ENST00000618207 KIAA0586Q9BVV6 1533 aa18.03■□□□□ 0.48
CIITA-212ENST00000618207 SUPT6HQ7KZ85 1726 aaKnown RBP18.02■□□□□ 0.48
CIITA-212ENST00000618207 HECW1Q76N89 1606 aa18■□□□□ 0.47
CIITA-212ENST00000618207 EHBP1L1Q8N3D4 1523 aa18■□□□□ 0.47
CIITA-212ENST00000618207 DISP1Q96F81 1524 aa17.99■□□□□ 0.47
CIITA-212ENST00000618207 UGGT2Q9NYU1 1516 aa17.99■□□□□ 0.47
CIITA-212ENST00000618207 CCDC18Q5T9S5 1454 aa17.98■□□□□ 0.47
CIITA-212ENST00000618207 JPH4Q96JJ6 628 aa17.97■□□□□ 0.47
CIITA-212ENST00000618207 SCAF1Q9H7N4 1312 aaKnown RBP17.97■□□□□ 0.47
CIITA-212ENST00000618207 KIAA0556O60303 1618 aa17.96■□□□□ 0.47
CIITA-212ENST00000618207 SYNJ2O15056 1496 aa17.95■□□□□ 0.46
CIITA-212ENST00000618207 MAGI1Q96QZ7 1491 aaPredicted RBP17.95■□□□□ 0.46
CIITA-212ENST00000618207 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.95■□□□□ 0.46
CIITA-212ENST00000618207 CEP170Q5SW79 1584 aa17.95■□□□□ 0.46
CIITA-212ENST00000618207 PTPN23Q9H3S7 1636 aa17.94■□□□□ 0.46
CIITA-212ENST00000618207 HIRIP3Q9BW71 556 aaPredicted RBP17.93■□□□□ 0.46
CIITA-212ENST00000618207 TRIM52Q96A61 297 aa17.93■□□□□ 0.46
CIITA-212ENST00000618207 ZNF644Q9H582 1327 aaPredicted RBP17.92■□□□□ 0.46
CIITA-212ENST00000618207 PLB1Q6P1J6 1458 aa17.91■□□□□ 0.46
CIITA-212ENST00000618207 ACIN1Q9UKV3 1341 aaKnown RBP17.91■□□□□ 0.46
CIITA-212ENST00000618207 ZNF777Q9ULD5 760 aaPredicted RBP17.9■□□□□ 0.46
CIITA-212ENST00000618207 NUP153P49790 1475 aaKnown RBP17.9■□□□□ 0.46
CIITA-212ENST00000618207 CENPBP07199 599 aaPredicted RBP17.89■□□□□ 0.45
CIITA-212ENST00000618207 NAIPQ13075 1403 aa17.89■□□□□ 0.45
CIITA-212ENST00000618207 CDK11AQ9UQ88 783 aaPredicted RBP17.88■□□□□ 0.45
CIITA-212ENST00000618207 HFM1A2PYH4 1435 aa17.88■□□□□ 0.45
CIITA-212ENST00000618207 RAPGEF6Q8TEU7 1601 aa17.87■□□□□ 0.45
CIITA-212ENST00000618207 PRG4Q92954 1404 aaPredicted RBP17.87■□□□□ 0.45
CIITA-212ENST00000618207 ARHGEF11O15085 1522 aa17.86■□□□□ 0.45
CIITA-212ENST00000618207 CARMIL2Q6F5E8 1435 aa17.84■□□□□ 0.45
CIITA-212ENST00000618207 FOXD1Q16676 465 aa17.83■□□□□ 0.45
CIITA-212ENST00000618207 NUP160Q12769 1436 aa17.81■□□□□ 0.44
CIITA-212ENST00000618207 UACAQ9BZF9 1416 aa17.81■□□□□ 0.44
CIITA-212ENST00000618207 TONSLQ96HA7 1378 aa17.81■□□□□ 0.44
CIITA-212ENST00000618207 CFDP1Q9UEE9 299 aaPredicted RBP17.81■□□□□ 0.44
CIITA-212ENST00000618207 PPP1R15AO75807 674 aaPredicted RBP17.79■□□□□ 0.44
CIITA-212ENST00000618207 GTF3C3Q9Y5Q9 886 aa17.78■□□□□ 0.44
CIITA-212ENST00000618207 TCOF1Q13428 1488 aaKnown RBP17.77■□□□□ 0.44
CIITA-212ENST00000618207 KDM6BO15054 1643 aa17.77■□□□□ 0.44
CIITA-212ENST00000618207 MIA2Q96PC5 1412 aa17.77■□□□□ 0.44
CIITA-212ENST00000618207 DDX10Q13206 875 aaKnown RBP17.77■□□□□ 0.44
CIITA-212ENST00000618207 PLEKHD1A6NEE1 506 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms