RNA–Protein interactions for RNA: ENST00000615606.4

CLTCL1-208, Transcript of clathrin heavy chain like 1, humanhuman

TSL 1 (best)

Gene CLTCL1, Length 4,994 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-208ENST00000615606 ABCC8Q09428 1581 aa13.11□□□□□ -0.31
CLTCL1-208ENST00000615606 CARMIL2Q6F5E8 1435 aa13.09□□□□□ -0.31
CLTCL1-208ENST00000615606 NEFMP07197 916 aa13.08□□□□□ -0.32
CLTCL1-208ENST00000615606 RRP7BPQ9NSQ0 103 aa13.07□□□□□ -0.32
CLTCL1-208ENST00000615606 FANCD2Q9BXW9 1451 aa13.06□□□□□ -0.32
CLTCL1-208ENST00000615606 NCAPD3P42695 1498 aa13.03□□□□□ -0.32
CLTCL1-208ENST00000615606 CCNB3Q8WWL7 1395 aa13.03□□□□□ -0.32
CLTCL1-208ENST00000615606 ARID4BQ4LE39 1312 aaPredicted RBP13.02□□□□□ -0.33
CLTCL1-208ENST00000615606 DAXXQ9UER7 740 aaPredicted RBP12.98□□□□□ -0.33
CLTCL1-208ENST00000615606 KDM2AQ9Y2K7 1162 aa12.98□□□□□ -0.33
CLTCL1-208ENST00000615606 PPP1R15AO75807 674 aaPredicted RBP12.97□□□□□ -0.33
CLTCL1-208ENST00000615606 TRHP20396 242 aaPredicted RBP12.96□□□□□ -0.33
CLTCL1-208ENST00000615606 RAPGEF2Q9Y4G8 1499 aa12.96□□□□□ -0.33
CLTCL1-208ENST00000615606 FMN1Q68DA7 1419 aa12.95□□□□□ -0.34
CLTCL1-208ENST00000615606 SLC24A1O60721 1099 aa12.94□□□□□ -0.34
CLTCL1-208ENST00000615606 VPS8Q8N3P4 1428 aa12.92□□□□□ -0.34
CLTCL1-208ENST00000615606 CLSPNQ9HAW4 1339 aa12.92□□□□□ -0.34
CLTCL1-208ENST00000615606 JPH4Q96JJ6 628 aa12.89□□□□□ -0.35
CLTCL1-208ENST00000615606 ZBTB47Q9UFB7 747 aaPredicted RBP12.88□□□□□ -0.35
CLTCL1-208ENST00000615606 CANXP27824 592 aaKnown RBP12.87□□□□□ -0.35
CLTCL1-208ENST00000615606 ARHGAP35Q9NRY4 1499 aa12.86□□□□□ -0.35
CLTCL1-208ENST00000615606 KANK1Q14678 1352 aa12.86□□□□□ -0.35
CLTCL1-208ENST00000615606 RGL3Q3MIN7 710 aa12.86□□□□□ -0.35
CLTCL1-208ENST00000615606 EFCAB2Q5VUJ9 269 aa12.85□□□□□ -0.35
CLTCL1-208ENST00000615606 EIF4G2P78344 907 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLTCL1-208ENST00000615606 FGD5Q6ZNL6 1462 aa12.85□□□□□ -0.35
CLTCL1-208ENST00000615606 DDX10Q13206 875 aaKnown RBP12.84□□□□□ -0.35
CLTCL1-208ENST00000615606 CC2D2AQ9P2K1 1620 aa12.84□□□□□ -0.35
CLTCL1-208ENST00000615606 OSCARQ8IYS5 282 aa12.83□□□□□ -0.36
CLTCL1-208ENST00000615606 GAPVD1Q14C86 1478 aa12.82□□□□□ -0.36
CLTCL1-208ENST00000615606 C14orf37Q86TY3 774 aa12.82□□□□□ -0.36
CLTCL1-208ENST00000615606 HMGXB3Q12766 1538 aa12.81□□□□□ -0.36
CLTCL1-208ENST00000615606 FHOD3Q2V2M9 1422 aa12.8□□□□□ -0.36
CLTCL1-208ENST00000615606 CDCA8Q53HL2 280 aa12.79□□□□□ -0.36
CLTCL1-208ENST00000615606 CFTRP13569 1480 aa12.78□□□□□ -0.36
CLTCL1-208ENST00000615606 SENP3Q9H4L4 574 aaPredicted RBP12.78□□□□□ -0.36
CLTCL1-208ENST00000615606 RAD54L2Q9Y4B4 1467 aa12.77□□□□□ -0.36
CLTCL1-208ENST00000615606 TMC1Q8TDI8 760 aa12.77□□□□□ -0.37
CLTCL1-208ENST00000615606 PTPRGP23470 1445 aa12.77□□□□□ -0.37
CLTCL1-208ENST00000615606 MLECQ14165 292 aa12.77□□□□□ -0.37
CLTCL1-208ENST00000615606 HDGFP51858 240 aaKnown RBP12.77□□□□□ -0.37
CLTCL1-208ENST00000615606 KANK4Q5T7N3 995 aaPredicted RBP12.76□□□□□ -0.37
CLTCL1-208ENST00000615606 CCDC18Q5T9S5 1454 aa12.76□□□□□ -0.37
CLTCL1-208ENST00000615606 SCAF1Q9H7N4 1312 aaKnown RBP12.76□□□□□ -0.37
CLTCL1-208ENST00000615606 WDR43Q15061 677 aaKnown RBP eCLIP12.75□□□□□ -0.37
CLTCL1-208ENST00000615606 IGF1RP08069 1367 aa12.74□□□□□ -0.37
CLTCL1-208ENST00000615606 RSPH4AQ5TD94 716 aa12.74□□□□□ -0.37
CLTCL1-208ENST00000615606 MRC2Q9UBG0 1479 aa12.74□□□□□ -0.37
CLTCL1-208ENST00000615606 CARD11Q9BXL7 1154 aa12.74□□□□□ -0.37
CLTCL1-208ENST00000615606 GGT6Q6P531 493 aa12.73□□□□□ -0.37
CLTCL1-208ENST00000615606 ANKRD30AQ9BXX3 1397 aa12.73□□□□□ -0.37
CLTCL1-208ENST00000615606 FAM9BQ8IZU0 186 aa12.72□□□□□ -0.37
CLTCL1-208ENST00000615606 RUSC2Q8N2Y8 1516 aa12.72□□□□□ -0.37
CLTCL1-208ENST00000615606 SETD5Q9C0A6 1442 aa12.72□□□□□ -0.37
CLTCL1-208ENST00000615606 POGKQ9P215 609 aa12.71□□□□□ -0.37
CLTCL1-208ENST00000615606 BICRAQ9NZM4 1560 aa12.71□□□□□ -0.38
CLTCL1-208ENST00000615606 AQRO60306 1485 aaKnown RBP eCLIP12.7□□□□□ -0.383e-7■■■■■ 30.5
CLTCL1-208ENST00000615606 NESP48681 1621 aa12.7□□□□□ -0.38
CLTCL1-208ENST00000615606 GRIN2BQ13224 1484 aa12.7□□□□□ -0.38
CLTCL1-208ENST00000615606 HNRNPUQ00839 825 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLTCL1-208ENST00000615606 CYB5RLQ6IPT4 315 aa12.7□□□□□ -0.38
CLTCL1-208ENST00000615606 HIRIP3Q9BW71 556 aaPredicted RBP12.69□□□□□ -0.38
CLTCL1-208ENST00000615606 MRS2Q9HD23 443 aa12.69□□□□□ -0.38
CLTCL1-208ENST00000615606 SPAG9O60271 1321 aaKnown RBP12.68□□□□□ -0.38
CLTCL1-208ENST00000615606 IFT140Q96RY7 1462 aa12.68□□□□□ -0.38
CLTCL1-208ENST00000615606 SIN3AQ96ST3 1273 aa12.67□□□□□ -0.38
CLTCL1-208ENST00000615606 TIMELESSQ9UNS1 1208 aa12.67□□□□□ -0.38
CLTCL1-208ENST00000615606 PKD2Q13563 968 aa12.66□□□□□ -0.38
CLTCL1-208ENST00000615606 GTF3C3Q9Y5Q9 886 aa12.66□□□□□ -0.38
CLTCL1-208ENST00000615606 HNRNPMP52272 730 aaKnown RBP eCLIP12.65□□□□□ -0.38
CLTCL1-208ENST00000615606 RTL5Q5HYW3 569 aaPredicted RBP12.65□□□□□ -0.38
CLTCL1-208ENST00000615606 KNSTRNQ9Y448 316 aa12.65□□□□□ -0.38
CLTCL1-208ENST00000615606 ZBTB7CA1YPR0 619 aa12.65□□□□□ -0.38
CLTCL1-208ENST00000615606 HAP1P54257 671 aaPredicted RBP12.65□□□□□ -0.38
CLTCL1-208ENST00000615606 DCAF11Q8TEB1 546 aa12.65□□□□□ -0.38
CLTCL1-208ENST00000615606 NUP155O75694 1391 aa12.64□□□□□ -0.39
CLTCL1-208ENST00000615606 CFAP53Q96M91 514 aa12.64□□□□□ -0.39
CLTCL1-208ENST00000615606 KIF3BO15066 747 aa12.64□□□□□ -0.39
CLTCL1-208ENST00000615606 BCL11AQ9H165 835 aa12.63□□□□□ -0.39
CLTCL1-208ENST00000615606 SALL2Q9Y467 1007 aaPredicted RBP12.63□□□□□ -0.39
CLTCL1-208ENST00000615606 TOPBP1Q92547 1522 aa12.62□□□□□ -0.39
CLTCL1-208ENST00000615606 PLEKHG5O94827 1062 aa12.61□□□□□ -0.39
CLTCL1-208ENST00000615606 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.6□□□□□ -0.39
CLTCL1-208ENST00000615606 MPHOSPH9Q99550 1183 aa12.59□□□□□ -0.39
CLTCL1-208ENST00000615606 TMF1P82094 1093 aa12.58□□□□□ -0.4
CLTCL1-208ENST00000615606 LAMC3Q9Y6N6 1575 aa12.58□□□□□ -0.4
CLTCL1-208ENST00000615606 RAB3GAP2Q9H2M9 1393 aa12.58□□□□□ -0.4
CLTCL1-208ENST00000615606 WASHC2CQ9Y4E1 1318 aa12.57□□□□□ -0.4
CLTCL1-208ENST00000615606 POLA1P09884 1462 aaPredicted RBP12.57□□□□□ -0.4
CLTCL1-208ENST00000615606 DNMBPQ6XZF7 1577 aa12.57□□□□□ -0.4
CLTCL1-208ENST00000615606 A0A0G2JS52 829 aa12.57□□□□□ -0.4
CLTCL1-208ENST00000615606 NPM2Q86SE8 214 aaKnown RBP12.57□□□□□ -0.4
CLTCL1-208ENST00000615606 SYNJ1O43426 1573 aa12.56□□□□□ -0.4
CLTCL1-208ENST00000615606 LMOD2Q6P5Q4 547 aa12.56□□□□□ -0.4
CLTCL1-208ENST00000615606 DNAJC5BQ9UF47 199 aa12.56□□□□□ -0.4
CLTCL1-208ENST00000615606 TOP2BQ02880 1626 aa12.54□□□□□ -0.4
CLTCL1-208ENST00000615606 PPM1GO15355 546 aaPredicted RBP12.54□□□□□ -0.4
CLTCL1-208ENST00000615606 CUX1P39880 1505 aa12.53□□□□□ -0.4
CLTCL1-208ENST00000615606 NUDCQ9Y266 331 aa12.53□□□□□ -0.4
CLTCL1-208ENST00000615606 ERICH3Q5RHP9 1530 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms