RNA–Protein interactions for RNA: ENST00000614616.4

CHD1-212, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CHD1, Length 8,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-212ENST00000614616 MRS2Q9HD23 443 aa18.08■□□□□ 0.48
CHD1-212ENST00000614616 HSP90AA2PQ14568 343 aaPredicted RBP18.06■□□□□ 0.48
CHD1-212ENST00000614616 AMER1Q5JTC6 1135 aaPredicted RBP18.02■□□□□ 0.47
CHD1-212ENST00000614616 PNNQ9H307 717 aaKnown RBP18.01■□□□□ 0.47
CHD1-212ENST00000614616 TSHZ2Q9NRE2 1034 aa17.97■□□□□ 0.47
CHD1-212ENST00000614616 SALL2Q9Y467 1007 aaPredicted RBP17.96■□□□□ 0.47
CHD1-212ENST00000614616 WDR43Q15061 677 aaKnown RBP eCLIP17.93■□□□□ 0.462e-8■■■■■ 38.9
CHD1-212ENST00000614616 MYH16Q9H6N6 1097 aa17.93■□□□□ 0.46
CHD1-212ENST00000614616 PTMSP20962 102 aa17.91■□□□□ 0.46
CHD1-212ENST00000614616 GOLGA6L6A8MZA4 724 aa17.91■□□□□ 0.46
CHD1-212ENST00000614616 SLC24A1O60721 1099 aa17.91■□□□□ 0.46
CHD1-212ENST00000614616 TNNT3P45378 269 aaPredicted RBP17.91■□□□□ 0.46
CHD1-212ENST00000614616 USP35Q9P2H5 1018 aa17.91■□□□□ 0.46
CHD1-212ENST00000614616 VSIG10Q8N0Z9 540 aa17.9■□□□□ 0.46
CHD1-212ENST00000614616 PRKCSHP14314 528 aaPredicted RBP17.89■□□□□ 0.45
CHD1-212ENST00000614616 ARID4BQ4LE39 1312 aaPredicted RBP17.88■□□□□ 0.45
CHD1-212ENST00000614616 CASC1Q6TDU7 716 aa17.85■□□□□ 0.45
CHD1-212ENST00000614616 B4GALNT3Q6L9W6 998 aa17.85■□□□□ 0.45
CHD1-212ENST00000614616 ZRSR1Q15695 479 aaKnown RBP17.84■□□□□ 0.45
CHD1-212ENST00000614616 IPO9Q96P70 1041 aaKnown RBP17.83■□□□□ 0.44
CHD1-212ENST00000614616 PKNOX2Q96KN3 472 aa17.82■□□□□ 0.44
CHD1-212ENST00000614616 HSP90AB1P08238 724 aaKnown RBP17.82■□□□□ 0.44
CHD1-212ENST00000614616 NRDCO43847 1150 aa17.8■□□□□ 0.44
CHD1-212ENST00000614616 EIF4G2P78344 907 aaKnown RBP eCLIP17.79■□□□□ 0.44
CHD1-212ENST00000614616 HSCBQ8IWL3 235 aa17.77■□□□□ 0.43
CHD1-212ENST00000614616 GOLGA6L3A6NEY3 463 aa17.74■□□□□ 0.43
CHD1-212ENST00000614616 KIAA2012Q0VF49 1180 aa17.74■□□□□ 0.43
CHD1-212ENST00000614616 PODXL2Q9NZ53 605 aa17.71■□□□□ 0.43
CHD1-212ENST00000614616 CCER2I3L3R5 266 aa17.71■□□□□ 0.43
CHD1-212ENST00000614616 FANCIQ9NVI1 1328 aa17.71■□□□□ 0.43
CHD1-212ENST00000614616 PLCB2Q00722 1185 aa17.7■□□□□ 0.42
CHD1-212ENST00000614616 ARID3AQ99856 593 aa17.7■□□□□ 0.42
CHD1-212ENST00000614616 GBP4Q96PP9 640 aa17.7■□□□□ 0.42
CHD1-212ENST00000614616 TCERG1O14776 1098 aaKnown RBP17.67■□□□□ 0.42
CHD1-212ENST00000614616 GSE1Q14687 1217 aa17.67■□□□□ 0.42
CHD1-212ENST00000614616 HIRIP3Q9BW71 556 aaPredicted RBP17.67■□□□□ 0.42
CHD1-212ENST00000614616 RGS3P49796 1198 aa17.65■□□□□ 0.42
CHD1-212ENST00000614616 FTSJ3Q8IY81 847 aaKnown RBP17.64■□□□□ 0.42
CHD1-212ENST00000614616 DRC7Q8IY82 874 aa17.64■□□□□ 0.41
CHD1-212ENST00000614616 TIMELESSQ9UNS1 1208 aa17.64■□□□□ 0.41
CHD1-212ENST00000614616 GZF1Q9H116 711 aaPredicted RBP17.6■□□□□ 0.41
CHD1-212ENST00000614616 CEP162Q5TB80 1403 aa17.59■□□□□ 0.41
CHD1-212ENST00000614616 EEA1Q15075 1411 aa17.58■□□□□ 0.41
CHD1-212ENST00000614616 SETQ01105 290 aaPredicted RBP17.58■□□□□ 0.4
CHD1-212ENST00000614616 SYAP1Q96A49 352 aaPredicted RBP17.58■□□□□ 0.4
CHD1-212ENST00000614616 CFAP44Q96MT7 982 aa17.58■□□□□ 0.4
CHD1-212ENST00000614616 SCRIBQ14160 1630 aa17.56■□□□□ 0.4
CHD1-212ENST00000614616 CLIP1P30622 1438 aa17.56■□□□□ 0.4
CHD1-212ENST00000614616 GOLGA3Q08378 1498 aa17.55■□□□□ 0.4
CHD1-212ENST00000614616 A0A0U1RQG5 324 aaPredicted RBP17.54■□□□□ 0.4
CHD1-212ENST00000614616 GOLGA6L1Q8N7Z2 621 aa17.54■□□□□ 0.4
CHD1-212ENST00000614616 TPRNQ4KMQ1 711 aa17.54■□□□□ 0.4
CHD1-212ENST00000614616 CHMP4BQ9H444 224 aaKnown RBP17.53■□□□□ 0.4
CHD1-212ENST00000614616 MTERF4Q7Z6M4 381 aaKnown RBP17.53■□□□□ 0.4
CHD1-212ENST00000614616 MS4A1P11836 297 aa17.52■□□□□ 0.4
CHD1-212ENST00000614616 ZNF771Q7L3S4 317 aaPredicted RBP17.52■□□□□ 0.39
CHD1-212ENST00000614616 MAP7D2Q96T17 732 aa17.51■□□□□ 0.39
CHD1-212ENST00000614616 DDX11L8A8MPP1 907 aa17.5■□□□□ 0.39
CHD1-212ENST00000614616 SPRYD3Q8NCJ5 442 aa17.5■□□□□ 0.39
CHD1-212ENST00000614616 ANO8Q9HCE9 1232 aaPredicted RBP17.5■□□□□ 0.39
CHD1-212ENST00000614616 PHF14O94880 888 aa17.49■□□□□ 0.39
CHD1-212ENST00000614616 GOLGA6L4A6NEF3 574 aa17.47■□□□□ 0.39
CHD1-212ENST00000614616 CALRP27797 417 aaKnown RBP17.46■□□□□ 0.39
CHD1-212ENST00000614616 APPP05067 770 aa17.45■□□□□ 0.38
CHD1-212ENST00000614616 SLKQ9H2G2 1235 aaPredicted RBP17.45■□□□□ 0.38
CHD1-212ENST00000614616 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.45■□□□□ 0.38
CHD1-212ENST00000614616 P3H3Q8IVL6 736 aa17.43■□□□□ 0.38
CHD1-212ENST00000614616 MCCP23508 829 aa17.43■□□□□ 0.38
CHD1-212ENST00000614616 ZBTB7CA1YPR0 619 aa17.42■□□□□ 0.38
CHD1-212ENST00000614616 ZCCHC6Q5VYS8 1495 aaKnown RBP17.42■□□□□ 0.38
CHD1-212ENST00000614616 CSPP1Q1MSJ5 1256 aa17.42■□□□□ 0.38
CHD1-212ENST00000614616 HTATSF1O43719 755 aaKnown RBP17.4■□□□□ 0.38
CHD1-212ENST00000614616 TPM2P07951 284 aa17.39■□□□□ 0.37
CHD1-212ENST00000614616 SKOR2Q2VWA4 1001 aaPredicted RBP17.39■□□□□ 0.37
CHD1-212ENST00000614616 CALD1Q05682 793 aaKnown RBP17.38■□□□□ 0.37
CHD1-212ENST00000614616 KNSTRNQ9Y448 316 aa17.37■□□□□ 0.37
CHD1-212ENST00000614616 TEX35Q5T0J7 233 aa17.37■□□□□ 0.37
CHD1-212ENST00000614616 FAM13BQ9NYF5 915 aa17.37■□□□□ 0.37
CHD1-212ENST00000614616 NOM1Q5C9Z4 860 aaKnown RBP17.37■□□□□ 0.37
CHD1-212ENST00000614616 ZNF777Q9ULD5 760 aaPredicted RBP17.36■□□□□ 0.37
CHD1-212ENST00000614616 KDM2AQ9Y2K7 1162 aa17.36■□□□□ 0.37
CHD1-212ENST00000614616 RRP9O43818 475 aaKnown RBP17.35■□□□□ 0.37
CHD1-212ENST00000614616 RCAN3Q9UKA8 241 aa17.35■□□□□ 0.37
CHD1-212ENST00000614616 CDCA8Q53HL2 280 aa17.35■□□□□ 0.37
CHD1-212ENST00000614616 FAM43AQ8N2R8 423 aa17.35■□□□□ 0.37
CHD1-212ENST00000614616 MTUS2Q5JR59 1369 aa17.34■□□□□ 0.37
CHD1-212ENST00000614616 CFAP53Q96M91 514 aa17.33■□□□□ 0.37
CHD1-212ENST00000614616 FRAT1Q92837 279 aaPredicted RBP17.33■□□□□ 0.36
CHD1-212ENST00000614616 UBE2Q2Q8WVN8 375 aa17.33■□□□□ 0.36
CHD1-212ENST00000614616 TPM4P67936 248 aa17.3■□□□□ 0.36
CHD1-212ENST00000614616 RSF1Q96T23 1441 aaPredicted RBP17.3■□□□□ 0.36
CHD1-212ENST00000614616 GPS2Q13227 327 aa17.3■□□□□ 0.36
CHD1-212ENST00000614616 CCDC66A2RUB6 948 aa17.29■□□□□ 0.36
CHD1-212ENST00000614616 TNIKQ9UKE5 1360 aa17.29■□□□□ 0.36
CHD1-212ENST00000614616 CEP164Q9UPV0 1460 aa17.28■□□□□ 0.36
CHD1-212ENST00000614616 TAF3Q5VWG9 929 aa17.28■□□□□ 0.36
CHD1-212ENST00000614616 CHIC2Q9UKJ5 165 aa17.28■□□□□ 0.36
CHD1-212ENST00000614616 NUDCQ9Y266 331 aa17.27■□□□□ 0.36
CHD1-212ENST00000614616 SENP3-EIF4A1A0A087X0R7 540 aa17.27■□□□□ 0.36
CHD1-212ENST00000614616 RB1CC1Q8TDY2 1594 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms