RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 CEP170Q5SW79 1584 aa23.86■■□□□ 1.41
CD48-203ENST00000613788 KIAA0586Q9BVV6 1533 aa23.84■■□□□ 1.41
CD48-203ENST00000613788 TNIKQ9UKE5 1360 aa23.79■■□□□ 1.4
CD48-203ENST00000613788 CLASP1Q7Z460 1538 aa23.76■■□□□ 1.39
CD48-203ENST00000613788 CTTNBP2Q8WZ74 1663 aa23.76■■□□□ 1.39
CD48-203ENST00000613788 JPH4Q96JJ6 628 aa23.74■■□□□ 1.39
CD48-203ENST00000613788 IQGAP2Q13576 1575 aa23.74■■□□□ 1.39
CD48-203ENST00000613788 RANGAP1P46060 587 aaPredicted RBP23.66■■□□□ 1.38
CD48-203ENST00000613788 UGGT2Q9NYU1 1516 aa23.64■■□□□ 1.37
CD48-203ENST00000613788 SHROOM2Q13796 1616 aa23.62■■□□□ 1.37
CD48-203ENST00000613788 PRG4Q92954 1404 aaPredicted RBP23.61■■□□□ 1.37
CD48-203ENST00000613788 CARMIL2Q6F5E8 1435 aa23.6■■□□□ 1.37
CD48-203ENST00000613788 CEP162Q5TB80 1403 aa23.56■■□□□ 1.36
CD48-203ENST00000613788 CLIP1P30622 1438 aa23.56■■□□□ 1.36
CD48-203ENST00000613788 EFCAB5A4FU69 1503 aa23.54■■□□□ 1.36
CD48-203ENST00000613788 DISP1Q96F81 1524 aa23.54■■□□□ 1.36
CD48-203ENST00000613788 P3H3Q8IVL6 736 aa23.52■■□□□ 1.36
CD48-203ENST00000613788 SAMD9Q5K651 1589 aa23.5■■□□□ 1.35
CD48-203ENST00000613788 ARHGAP35Q9NRY4 1499 aa23.5■■□□□ 1.35
CD48-203ENST00000613788 KIAA0556O60303 1618 aa23.49■■□□□ 1.35
CD48-203ENST00000613788 DNAJC5Q9H3Z4 198 aa23.48■■□□□ 1.35
CD48-203ENST00000613788 ARHGEF11O15085 1522 aa23.47■■□□□ 1.35
CD48-203ENST00000613788 ERCC6L2Q5T890 1561 aa23.47■■□□□ 1.35
CD48-203ENST00000613788 PTPRGP23470 1445 aa23.42■■□□□ 1.34
CD48-203ENST00000613788 FHOD3Q2V2M9 1422 aa23.42■■□□□ 1.34
CD48-203ENST00000613788 TTBK1Q5TCY1 1321 aaPredicted RBP23.41■■□□□ 1.34
CD48-203ENST00000613788 RIMBP3CA6NJZ7 1639 aa23.39■■□□□ 1.33
CD48-203ENST00000613788 RIMBP3BA6NNM3 1639 aa23.39■■□□□ 1.33
CD48-203ENST00000613788 RIMBP3Q9UFD9 1639 aa23.39■■□□□ 1.33
CD48-203ENST00000613788 ARAP1Q96P48 1450 aa23.38■■□□□ 1.33
CD48-203ENST00000613788 FMN1Q68DA7 1419 aa23.35■■□□□ 1.33
CD48-203ENST00000613788 CYB5RLQ6IPT4 315 aa23.3■■□□□ 1.32
CD48-203ENST00000613788 UACAQ9BZF9 1416 aa23.26■■□□□ 1.31
CD48-203ENST00000613788 VPS8Q8N3P4 1428 aa23.25■■□□□ 1.31
CD48-203ENST00000613788 PLB1Q6P1J6 1458 aa23.24■■□□□ 1.31
CD48-203ENST00000613788 ATP1B4Q9UN42 357 aaPredicted RBP23.23■■□□□ 1.31
CD48-203ENST00000613788 ABCA8O94911 1581 aa23.21■■□□□ 1.31
CD48-203ENST00000613788 CASKIN1Q8WXD9 1431 aa23.2■■□□□ 1.31
CD48-203ENST00000613788 UHRF1BP1LA0JNW5 1464 aa23.19■■□□□ 1.3
CD48-203ENST00000613788 RAPGEF6Q8TEU7 1601 aa23.19■■□□□ 1.3
CD48-203ENST00000613788 ABCC2Q92887 1545 aa23.17■■□□□ 1.3
CD48-203ENST00000613788 FYCO1Q9BQS8 1478 aa23.16■■□□□ 1.3
CD48-203ENST00000613788 NPM1P06748 294 aaKnown RBP eCLIP23.14■■□□□ 1.3
CD48-203ENST00000613788 PCF11O94913 1555 aaKnown RBP23.14■■□□□ 1.29
CD48-203ENST00000613788 HECW1Q76N89 1606 aa23.13■■□□□ 1.29
CD48-203ENST00000613788 NUP153P49790 1475 aaKnown RBP23.12■■□□□ 1.29
CD48-203ENST00000613788 ADCY10Q96PN6 1610 aa23.12■■□□□ 1.29
CD48-203ENST00000613788 ARID3CA6NKF2 412 aa23.09■■□□□ 1.29
CD48-203ENST00000613788 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.09■■□□□ 1.29
CD48-203ENST00000613788 APLP2Q06481 763 aa23.09■■□□□ 1.29
CD48-203ENST00000613788 HNRNPUL2Q1KMD3 747 aaKnown RBP23.09■■□□□ 1.29
CD48-203ENST00000613788 ATP10BO94823 1461 aa23.07■■□□□ 1.28
CD48-203ENST00000613788 EPRSP07814 1512 aaKnown RBP23.07■■□□□ 1.28
CD48-203ENST00000613788 KDM5BQ9UGL1 1544 aa23.07■■□□□ 1.28
CD48-203ENST00000613788 CCDC18Q5T9S5 1454 aa23.06■■□□□ 1.28
CD48-203ENST00000613788 CDK11AQ9UQ88 783 aaPredicted RBP23.03■■□□□ 1.28
CD48-203ENST00000613788 CDK13Q14004 1512 aaKnown RBP23■■□□□ 1.27
CD48-203ENST00000613788 PLEKHD1A6NEE1 506 aa22.99■■□□□ 1.27
CD48-203ENST00000613788 ZCCHC11Q5TAX3 1644 aaKnown RBP22.99■■□□□ 1.27
CD48-203ENST00000613788 MAP3K1Q13233 1512 aa22.98■■□□□ 1.27
CD48-203ENST00000613788 LRRIQ1Q96JM4 1722 aa22.96■■□□□ 1.27
CD48-203ENST00000613788 TIAM1Q13009 1591 aa22.94■■□□□ 1.26
CD48-203ENST00000613788 ASXL2Q76L83 1435 aa22.91■■□□□ 1.26
CD48-203ENST00000613788 MTUS2Q5JR59 1369 aa22.91■■□□□ 1.26
CD48-203ENST00000613788 MAPKBP1O60336 1514 aa22.9■■□□□ 1.26
CD48-203ENST00000613788 CFAP43Q8NDM7 1665 aa22.89■■□□□ 1.26
CD48-203ENST00000613788 KANK4Q5T7N3 995 aaPredicted RBP22.87■■□□□ 1.25
CD48-203ENST00000613788 WDR7Q9Y4E6 1490 aa22.87■■□□□ 1.25
CD48-203ENST00000613788 TROQ12816 1431 aaPredicted RBP22.87■■□□□ 1.25
CD48-203ENST00000613788 LRRC9Q6ZRR7 1453 aa22.87■■□□□ 1.25
CD48-203ENST00000613788 KCNH8Q96L42 1107 aa22.86■■□□□ 1.25
CD48-203ENST00000613788 MAGI3Q5TCQ9 1506 aa22.83■■□□□ 1.25
CD48-203ENST00000613788 EHBP1L1Q8N3D4 1523 aa22.82■■□□□ 1.24
CD48-203ENST00000613788 PPARGC1BQ86YN6 1023 aaKnown RBP22.78■■□□□ 1.24
CD48-203ENST00000613788 KIF14Q15058 1648 aa22.75■■□□□ 1.23
CD48-203ENST00000613788 ABCC10Q5T3U5 1492 aa22.74■■□□□ 1.23
CD48-203ENST00000613788 FAM69CQ0P6D2 419 aa22.74■■□□□ 1.23
CD48-203ENST00000613788 SUPT6HQ7KZ85 1726 aaKnown RBP22.72■■□□□ 1.23
CD48-203ENST00000613788 NCOA2Q15596 1464 aa22.71■■□□□ 1.23
CD48-203ENST00000613788 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.69■■□□□ 1.22
CD48-203ENST00000613788 GLI2P10070 1586 aa22.69■■□□□ 1.22
CD48-203ENST00000613788 DIP2BQ9P265 1576 aa22.68■■□□□ 1.22
CD48-203ENST00000613788 CCNB3Q8WWL7 1395 aa22.68■■□□□ 1.22
CD48-203ENST00000613788 TRHP20396 242 aaPredicted RBP22.67■■□□□ 1.22
CD48-203ENST00000613788 ABCA9Q8IUA7 1624 aa22.66■■□□□ 1.22
CD48-203ENST00000613788 CD109Q6YHK3 1445 aa22.64■■□□□ 1.21
CD48-203ENST00000613788 TTC37Q6PGP7 1564 aa22.63■■□□□ 1.21
CD48-203ENST00000613788 PLCH2O75038 1416 aa22.61■■□□□ 1.21
CD48-203ENST00000613788 PHLDB1Q86UU1 1377 aa22.61■■□□□ 1.21
CD48-203ENST00000613788 GPATCH8Q9UKJ3 1502 aaKnown RBP22.61■■□□□ 1.21
CD48-203ENST00000613788 CFDP1Q9UEE9 299 aaPredicted RBP22.6■■□□□ 1.21
CD48-203ENST00000613788 MYOM3Q5VTT5 1437 aa22.58■■□□□ 1.21
CD48-203ENST00000613788 KIF13AQ9H1H9 1805 aa22.58■■□□□ 1.2
CD48-203ENST00000613788 EFCAB2Q5VUJ9 269 aa22.57■■□□□ 1.2
CD48-203ENST00000613788 MAP3K4Q9Y6R4 1608 aa22.57■■□□□ 1.2
CD48-203ENST00000613788 MYO5CQ9NQX4 1742 aa22.56■■□□□ 1.2
CD48-203ENST00000613788 MIA2Q96PC5 1412 aa22.55■■□□□ 1.2
CD48-203ENST00000613788 ARAP3Q8WWN8 1544 aa22.54■■□□□ 1.2
CD48-203ENST00000613788 ITSN2Q9NZM3 1697 aa22.54■■□□□ 1.2
CD48-203ENST00000613788 CDC42BPAQ5VT25 1732 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms