RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ARHGAP35Q9NRY4 1499 aa22.68■■□□□ 1.22
USP39-220ENST00000613444 ARAP1Q96P48 1450 aa22.65■■□□□ 1.22
USP39-220ENST00000613444 CHMP7Q8WUX9 453 aaPredicted RBP22.63■■□□□ 1.21
USP39-220ENST00000613444 CEP170Q5SW79 1584 aa22.62■■□□□ 1.21
USP39-220ENST00000613444 IQGAP2Q13576 1575 aa22.61■■□□□ 1.21
USP39-220ENST00000613444 CHD1O14646 1710 aa22.6■■□□□ 1.21
USP39-220ENST00000613444 NUP160Q12769 1436 aa22.59■■□□□ 1.21
USP39-220ENST00000613444 VPS8Q8N3P4 1428 aa22.59■■□□□ 1.21
USP39-220ENST00000613444 KIAA0586Q9BVV6 1533 aa22.58■■□□□ 1.21
USP39-220ENST00000613444 EFCAB5A4FU69 1503 aa22.58■■□□□ 1.21
USP39-220ENST00000613444 SAMD9Q5K651 1589 aa22.57■■□□□ 1.2
USP39-220ENST00000613444 FBLN2P98095 1184 aa22.56■■□□□ 1.2
USP39-220ENST00000613444 UGGT2Q9NYU1 1516 aa22.52■■□□□ 1.19
USP39-220ENST00000613444 FHOD3Q2V2M9 1422 aa22.47■■□□□ 1.19
USP39-220ENST00000613444 P3H3Q8IVL6 736 aa22.45■■□□□ 1.18
USP39-220ENST00000613444 DISP1Q96F81 1524 aa22.42■■□□□ 1.18
USP39-220ENST00000613444 KIAA0556O60303 1618 aa22.39■■□□□ 1.18
USP39-220ENST00000613444 JPH4Q96JJ6 628 aa22.36■■□□□ 1.17
USP39-220ENST00000613444 PCF11O94913 1555 aaKnown RBP22.36■■□□□ 1.17
USP39-220ENST00000613444 FMN1Q68DA7 1419 aa22.34■■□□□ 1.17
USP39-220ENST00000613444 SHROOM2Q13796 1616 aa22.34■■□□□ 1.17
USP39-220ENST00000613444 CLASP1Q7Z460 1538 aa22.34■■□□□ 1.17
USP39-220ENST00000613444 PPARGC1BQ86YN6 1023 aaKnown RBP22.32■■□□□ 1.16
USP39-220ENST00000613444 CASKIN1Q8WXD9 1431 aa22.3■■□□□ 1.16
USP39-220ENST00000613444 FYCO1Q9BQS8 1478 aa22.3■■□□□ 1.16
USP39-220ENST00000613444 MAP3K1Q13233 1512 aa22.26■■□□□ 1.15
USP39-220ENST00000613444 CARMIL2Q6F5E8 1435 aa22.25■■□□□ 1.15
USP39-220ENST00000613444 LRRIQ1Q96JM4 1722 aa22.24■■□□□ 1.15
USP39-220ENST00000613444 PRG4Q92954 1404 aaPredicted RBP22.24■■□□□ 1.15
USP39-220ENST00000613444 APLP2Q06481 763 aa22.23■■□□□ 1.15
USP39-220ENST00000613444 TIAM1Q13009 1591 aa22.23■■□□□ 1.15
USP39-220ENST00000613444 CFAP43Q8NDM7 1665 aa22.22■■□□□ 1.15
USP39-220ENST00000613444 ERCC6L2Q5T890 1561 aa22.18■■□□□ 1.14
USP39-220ENST00000613444 KANK4Q5T7N3 995 aaPredicted RBP22.18■■□□□ 1.14
USP39-220ENST00000613444 TRIM26Q12899 539 aaPredicted RBP22.17■■□□□ 1.14
USP39-220ENST00000613444 HECW1Q76N89 1606 aa22.16■■□□□ 1.14
USP39-220ENST00000613444 RAPGEF6Q8TEU7 1601 aa22.15■■□□□ 1.14
USP39-220ENST00000613444 TTBK1Q5TCY1 1321 aaPredicted RBP22.15■■□□□ 1.14
USP39-220ENST00000613444 ATP1B4Q9UN42 357 aaPredicted RBP22.13■■□□□ 1.13
USP39-220ENST00000613444 OSCARQ8IYS5 282 aa22.12■■□□□ 1.13
USP39-220ENST00000613444 LRRC9Q6ZRR7 1453 aa22.12■■□□□ 1.13
USP39-220ENST00000613444 PLB1Q6P1J6 1458 aa22.1■■□□□ 1.13
USP39-220ENST00000613444 PCGF6Q9BYE7 350 aa22.1■■□□□ 1.13
USP39-220ENST00000613444 ABCA8O94911 1581 aa22.1■■□□□ 1.13
USP39-220ENST00000613444 NUP153P49790 1475 aaKnown RBP22.09■■□□□ 1.13
USP39-220ENST00000613444 EPRSP07814 1512 aaKnown RBP22.09■■□□□ 1.13
USP39-220ENST00000613444 CCDC18Q5T9S5 1454 aa22.08■■□□□ 1.13
USP39-220ENST00000613444 PTPRGP23470 1445 aa22.07■■□□□ 1.12
USP39-220ENST00000613444 CDK13Q14004 1512 aaKnown RBP22.04■■□□□ 1.12
USP39-220ENST00000613444 MAGI3Q5TCQ9 1506 aa22.02■■□□□ 1.11
USP39-220ENST00000613444 EHBP1L1Q8N3D4 1523 aa21.97■■□□□ 1.11
USP39-220ENST00000613444 UACAQ9BZF9 1416 aa21.96■■□□□ 1.11
USP39-220ENST00000613444 MTUS2Q5JR59 1369 aa21.95■■□□□ 1.1
USP39-220ENST00000613444 ARID3CA6NKF2 412 aa21.95■■□□□ 1.1
USP39-220ENST00000613444 ATP10BO94823 1461 aa21.92■■□□□ 1.1
USP39-220ENST00000613444 ABCC2Q92887 1545 aa21.92■■□□□ 1.1
USP39-220ENST00000613444 SUPT6HQ7KZ85 1726 aaKnown RBP21.91■■□□□ 1.1
USP39-220ENST00000613444 PHLDB1Q86UU1 1377 aa21.91■■□□□ 1.1
USP39-220ENST00000613444 ARHGEF11O15085 1522 aa21.89■■□□□ 1.1
USP39-220ENST00000613444 RRBP1Q9P2E9 1410 aaKnown RBP21.89■■□□□ 1.1
USP39-220ENST00000613444 UHRF1BP1LA0JNW5 1464 aa21.89■■□□□ 1.09
USP39-220ENST00000613444 NCOA2Q15596 1464 aa21.87■■□□□ 1.09
USP39-220ENST00000613444 TROQ12816 1431 aaPredicted RBP21.83■■□□□ 1.09
USP39-220ENST00000613444 ADCY10Q96PN6 1610 aa21.83■■□□□ 1.09
USP39-220ENST00000613444 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.82■■□□□ 1.08
USP39-220ENST00000613444 HNRNPUL2Q1KMD3 747 aaKnown RBP21.82■■□□□ 1.08
USP39-220ENST00000613444 CDK11AQ9UQ88 783 aaPredicted RBP21.82■■□□□ 1.08
USP39-220ENST00000613444 CCNB3Q8WWL7 1395 aa21.8■■□□□ 1.08
USP39-220ENST00000613444 KDM5BQ9UGL1 1544 aa21.8■■□□□ 1.08
USP39-220ENST00000613444 ZCCHC11Q5TAX3 1644 aaKnown RBP21.79■■□□□ 1.08
USP39-220ENST00000613444 KIF14Q15058 1648 aa21.77■■□□□ 1.08
USP39-220ENST00000613444 MYOM3Q5VTT5 1437 aa21.77■■□□□ 1.08
USP39-220ENST00000613444 FGD6Q6ZV73 1430 aa21.75■■□□□ 1.07
USP39-220ENST00000613444 PLEKHD1A6NEE1 506 aa21.74■■□□□ 1.07
USP39-220ENST00000613444 RIMBP3CA6NJZ7 1639 aa21.74■■□□□ 1.07
USP39-220ENST00000613444 RIMBP3BA6NNM3 1639 aa21.74■■□□□ 1.07
USP39-220ENST00000613444 RIMBP3Q9UFD9 1639 aa21.74■■□□□ 1.07
USP39-220ENST00000613444 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.7■■□□□ 1.061e-6■□□□□ 11
USP39-220ENST00000613444 ABCC10Q5T3U5 1492 aa21.69■■□□□ 1.06
USP39-220ENST00000613444 PTPN23Q9H3S7 1636 aa21.67■■□□□ 1.06
USP39-220ENST00000613444 MIA2Q96PC5 1412 aa21.66■■□□□ 1.06
USP39-220ENST00000613444 CDC42BPAQ5VT25 1732 aa21.66■■□□□ 1.06
USP39-220ENST00000613444 TCOF1Q13428 1488 aaKnown RBP21.65■■□□□ 1.06
USP39-220ENST00000613444 GPATCH8Q9UKJ3 1502 aaKnown RBP21.65■■□□□ 1.06
USP39-220ENST00000613444 ITSN2Q9NZM3 1697 aa21.65■■□□□ 1.06
USP39-220ENST00000613444 FAM50AQ14320 339 aaKnown RBP21.62■■□□□ 1.05
USP39-220ENST00000613444 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.6■■□□□ 1.05
USP39-220ENST00000613444 TTC37Q6PGP7 1564 aa21.59■■□□□ 1.05
USP39-220ENST00000613444 WDR7Q9Y4E6 1490 aa21.58■■□□□ 1.04
USP39-220ENST00000613444 CDC42BPBQ9Y5S2 1711 aa21.56■■□□□ 1.04
USP39-220ENST00000613444 PREX2Q70Z35 1606 aa21.55■■□□□ 1.04
USP39-220ENST00000613444 ASXL2Q76L83 1435 aa21.55■■□□□ 1.04
USP39-220ENST00000613444 CYB5RLQ6IPT4 315 aa21.55■■□□□ 1.04
USP39-220ENST00000613444 ITGAEP38570 1179 aa21.54■■□□□ 1.04
USP39-220ENST00000613444 PTPRKQ15262 1439 aa21.53■■□□□ 1.04
USP39-220ENST00000613444 MYO5CQ9NQX4 1742 aa21.53■■□□□ 1.04
USP39-220ENST00000613444 KCNH8Q96L42 1107 aa21.52■■□□□ 1.04
USP39-220ENST00000613444 CFDP1Q9UEE9 299 aaPredicted RBP21.52■■□□□ 1.04
USP39-220ENST00000613444 ZNF644Q9H582 1327 aaPredicted RBP21.51■■□□□ 1.03
USP39-220ENST00000613444 CAMSAP2Q08AD1 1489 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 201.8 ms