RNA–Protein interactions for RNA: ENST00000611068.1

RTN1-209, Transcript of reticulon 1, humanhuman

TSL 5 BASIC

Gene RTN1, Length 2,647 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-209ENST00000611068 APLP2Q06481 763 aa24.07■■□□□ 1.44
RTN1-209ENST00000611068 VPS8Q8N3P4 1428 aa24.06■■□□□ 1.44
RTN1-209ENST00000611068 ARAP1Q96P48 1450 aa24.06■■□□□ 1.44
RTN1-209ENST00000611068 ABCA5Q8WWZ7 1642 aa24.05■■□□□ 1.44
RTN1-209ENST00000611068 WDR62O43379 1518 aa24.04■■□□□ 1.44
RTN1-209ENST00000611068 ARHGAP35Q9NRY4 1499 aa24.02■■□□□ 1.44
RTN1-209ENST00000611068 ATP1B4Q9UN42 357 aaPredicted RBP24.01■■□□□ 1.43
RTN1-209ENST00000611068 PRKCSHP14314 528 aaPredicted RBP23.99■■□□□ 1.43
RTN1-209ENST00000611068 THOC2Q8NI27 1593 aaKnown RBP23.97■■□□□ 1.43
RTN1-209ENST00000611068 IFT140Q96RY7 1462 aa23.95■■□□□ 1.42
RTN1-209ENST00000611068 FBLN2P98095 1184 aa23.95■■□□□ 1.42
RTN1-209ENST00000611068 CUL7Q14999 1698 aa23.94■■□□□ 1.42
RTN1-209ENST00000611068 KANK4Q5T7N3 995 aaPredicted RBP23.92■■□□□ 1.42
RTN1-209ENST00000611068 PBRM1Q86U86 1689 aa23.88■■□□□ 1.41
RTN1-209ENST00000611068 FHOD3Q2V2M9 1422 aa23.88■■□□□ 1.41
RTN1-209ENST00000611068 GRIN2BQ13224 1484 aa23.87■■□□□ 1.41
RTN1-209ENST00000611068 DIEXFQ68CQ4 756 aaKnown RBP23.84■■□□□ 1.41
RTN1-209ENST00000611068 FHAD1B1AJZ9 1412 aa23.82■■□□□ 1.4
RTN1-209ENST00000611068 SNAPC4Q5SXM2 1469 aa23.82■■□□□ 1.4
RTN1-209ENST00000611068 EIF4G3O43432 1585 aaKnown RBP23.82■■□□□ 1.4
RTN1-209ENST00000611068 HNRNPUL2Q1KMD3 747 aaKnown RBP23.79■■□□□ 1.4
RTN1-209ENST00000611068 CHMP7Q8WUX9 453 aaPredicted RBP23.79■■□□□ 1.4
RTN1-209ENST00000611068 CTTNBP2Q8WZ74 1663 aa23.77■■□□□ 1.4
RTN1-209ENST00000611068 ADAMTS12P58397 1594 aa23.76■■□□□ 1.39
RTN1-209ENST00000611068 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.76■■□□□ 1.39
RTN1-209ENST00000611068 ANP32EQ9BTT0 268 aa23.74■■□□□ 1.39
RTN1-209ENST00000611068 ARID3CA6NKF2 412 aa23.72■■□□□ 1.39
RTN1-209ENST00000611068 YTHDC1Q96MU7 727 aaKnown RBP23.66■■□□□ 1.38
RTN1-209ENST00000611068 PCF11O94913 1555 aaKnown RBP23.63■■□□□ 1.37
RTN1-209ENST00000611068 GRIN2AQ12879 1464 aa23.62■■□□□ 1.37
RTN1-209ENST00000611068 ITGAEP38570 1179 aa23.61■■□□□ 1.37
RTN1-209ENST00000611068 EFCAB5A4FU69 1503 aa23.59■■□□□ 1.37
RTN1-209ENST00000611068 IQGAP2Q13576 1575 aa23.58■■□□□ 1.37
RTN1-209ENST00000611068 CCER1Q8TC90 406 aaPredicted RBP23.58■■□□□ 1.37
RTN1-209ENST00000611068 MAGI1Q96QZ7 1491 aaPredicted RBP23.56■■□□□ 1.36
RTN1-209ENST00000611068 SYNJ2O15056 1496 aa23.55■■□□□ 1.36
RTN1-209ENST00000611068 SAMD9Q5K651 1589 aa23.53■■□□□ 1.36
RTN1-209ENST00000611068 FMN1Q68DA7 1419 aa23.52■■□□□ 1.36
RTN1-209ENST00000611068 TIAM1Q13009 1591 aa23.52■■□□□ 1.36
RTN1-209ENST00000611068 CASKIN1Q8WXD9 1431 aa23.5■■□□□ 1.35
RTN1-209ENST00000611068 KIAA0586Q9BVV6 1533 aa23.5■■□□□ 1.35
RTN1-209ENST00000611068 CEP170Q5SW79 1584 aa23.49■■□□□ 1.35
RTN1-209ENST00000611068 LRRC9Q6ZRR7 1453 aa23.48■■□□□ 1.35
RTN1-209ENST00000611068 JPH4Q96JJ6 628 aa23.47■■□□□ 1.35
RTN1-209ENST00000611068 FYCO1Q9BQS8 1478 aa23.46■■□□□ 1.35
RTN1-209ENST00000611068 FAM50AQ14320 339 aaKnown RBP23.44■■□□□ 1.34
RTN1-209ENST00000611068 PHLDB1Q86UU1 1377 aa23.42■■□□□ 1.34
RTN1-209ENST00000611068 DISP1Q96F81 1524 aa23.41■■□□□ 1.34
RTN1-209ENST00000611068 MTUS2Q5JR59 1369 aa23.4■■□□□ 1.34
RTN1-209ENST00000611068 UGGT2Q9NYU1 1516 aa23.38■■□□□ 1.33
RTN1-209ENST00000611068 CCNB3Q8WWL7 1395 aa23.37■■□□□ 1.33
RTN1-209ENST00000611068 LRRIQ1Q96JM4 1722 aa23.36■■□□□ 1.33
RTN1-209ENST00000611068 NUP160Q12769 1436 aa23.35■■□□□ 1.33
RTN1-209ENST00000611068 TSHZ2Q9NRE2 1034 aa23.35■■□□□ 1.33
RTN1-209ENST00000611068 MAP3K1Q13233 1512 aa23.34■■□□□ 1.33
RTN1-209ENST00000611068 CFAP43Q8NDM7 1665 aa23.34■■□□□ 1.33
RTN1-209ENST00000611068 KIAA0556O60303 1618 aa23.33■■□□□ 1.32
RTN1-209ENST00000611068 CDK13Q14004 1512 aaKnown RBP23.33■■□□□ 1.32
RTN1-209ENST00000611068 RRBP1Q9P2E9 1410 aaKnown RBP23.31■■□□□ 1.32
RTN1-209ENST00000611068 CHD1O14646 1710 aa23.29■■□□□ 1.32
RTN1-209ENST00000611068 PLB1Q6P1J6 1458 aa23.27■■□□□ 1.32
RTN1-209ENST00000611068 EPRSP07814 1512 aaKnown RBP23.25■■□□□ 1.31
RTN1-209ENST00000611068 MAGI3Q5TCQ9 1506 aa23.25■■□□□ 1.31
RTN1-209ENST00000611068 PRG4Q92954 1404 aaPredicted RBP23.24■■□□□ 1.31
RTN1-209ENST00000611068 CARMIL2Q6F5E8 1435 aa23.24■■□□□ 1.31
RTN1-209ENST00000611068 MIER1Q8N108 512 aa23.22■■□□□ 1.31
RTN1-209ENST00000611068 SUPT16HQ9Y5B9 1047 aaKnown RBP23.2■■□□□ 1.3
RTN1-209ENST00000611068 HECW1Q76N89 1606 aa23.2■■□□□ 1.3
RTN1-209ENST00000611068 ERICH6Q7L0X2 663 aa23.19■■□□□ 1.3
RTN1-209ENST00000611068 NCOA2Q15596 1464 aa23.18■■□□□ 1.3
RTN1-209ENST00000611068 NUP153P49790 1475 aaKnown RBP23.18■■□□□ 1.3
RTN1-209ENST00000611068 CCDC18Q5T9S5 1454 aa23.15■■□□□ 1.3
RTN1-209ENST00000611068 ZNF316A6NFI3 1004 aaPredicted RBP23.15■■□□□ 1.3
RTN1-209ENST00000611068 RAPGEF6Q8TEU7 1601 aa23.14■■□□□ 1.29
RTN1-209ENST00000611068 FGD6Q6ZV73 1430 aa23.12■■□□□ 1.29
RTN1-209ENST00000611068 ERCC6L2Q5T890 1561 aa23.11■■□□□ 1.29
RTN1-209ENST00000611068 PTPRGP23470 1445 aa23.11■■□□□ 1.29
RTN1-209ENST00000611068 CHIC2Q9UKJ5 165 aa23.09■■□□□ 1.29
RTN1-209ENST00000611068 EHBP1L1Q8N3D4 1523 aa23.09■■□□□ 1.29
RTN1-209ENST00000611068 SUPT6HQ7KZ85 1726 aaKnown RBP23.07■■□□□ 1.28
RTN1-209ENST00000611068 MYOM3Q5VTT5 1437 aa23.06■■□□□ 1.28
RTN1-209ENST00000611068 CDK11AQ9UQ88 783 aaPredicted RBP23.06■■□□□ 1.28
RTN1-209ENST00000611068 ZNF644Q9H582 1327 aaPredicted RBP23.04■■□□□ 1.28
RTN1-209ENST00000611068 RAB3GAP2Q9H2M9 1393 aa23.04■■□□□ 1.28
RTN1-209ENST00000611068 ZNF777Q9ULD5 760 aaPredicted RBP23.02■■□□□ 1.28
RTN1-209ENST00000611068 PTPRKQ15262 1439 aa23.01■■□□□ 1.27
RTN1-209ENST00000611068 PLEKHD1A6NEE1 506 aa22.99■■□□□ 1.27
RTN1-209ENST00000611068 DHX57Q6P158 1386 aaKnown RBP22.99■■□□□ 1.27
RTN1-209ENST00000611068 RRP7BPQ9NSQ0 103 aa22.98■■□□□ 1.27
RTN1-209ENST00000611068 ATP10BO94823 1461 aa22.97■■□□□ 1.27
RTN1-209ENST00000611068 SETD5Q9C0A6 1442 aa22.96■■□□□ 1.27
RTN1-209ENST00000611068 ABCA8O94911 1581 aa22.95■■□□□ 1.26
RTN1-209ENST00000611068 ARHGEF11O15085 1522 aa22.94■■□□□ 1.26
RTN1-209ENST00000611068 PTPN23Q9H3S7 1636 aa22.93■■□□□ 1.26
RTN1-209ENST00000611068 KCNH8Q96L42 1107 aa22.92■■□□□ 1.26
RTN1-209ENST00000611068 TROQ12816 1431 aaPredicted RBP22.92■■□□□ 1.26
RTN1-209ENST00000611068 CFDP1Q9UEE9 299 aaPredicted RBP22.92■■□□□ 1.26
RTN1-209ENST00000611068 SHROOM2Q13796 1616 aa22.9■■□□□ 1.26
RTN1-209ENST00000611068 KIF14Q15058 1648 aa22.9■■□□□ 1.26
RTN1-209ENST00000611068 CLASP1Q7Z460 1538 aa22.89■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms