RNA–Protein interactions for RNA: ENST00000610726.4

CSDE1-218, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 4,312 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-218ENST00000610726 KANK4Q5T7N3 995 aaPredicted RBP10.11□□□□□ -0.79
CSDE1-218ENST00000610726 RUSC2Q8N2Y8 1516 aa10.1□□□□□ -0.79
CSDE1-218ENST00000610726 ESF1Q9H501 851 aaKnown RBP10.1□□□□□ -0.79
CSDE1-218ENST00000610726 EIF4G1Q04637 1599 aaKnown RBP10.1□□□□□ -0.79
CSDE1-218ENST00000610726 STAG3Q9UJ98 1225 aa10.07□□□□□ -0.8
CSDE1-218ENST00000610726 VPS8Q8N3P4 1428 aa10.07□□□□□ -0.8
CSDE1-218ENST00000610726 FHAD1B1AJZ9 1412 aa10.06□□□□□ -0.8
CSDE1-218ENST00000610726 SIN3AQ96ST3 1273 aa10.05□□□□□ -0.8
CSDE1-218ENST00000610726 CCNB3Q8WWL7 1395 aa10.05□□□□□ -0.8
CSDE1-218ENST00000610726 RAPGEF2Q9Y4G8 1499 aa10.04□□□□□ -0.8
CSDE1-218ENST00000610726 SENP3Q9H4L4 574 aaPredicted RBP10.04□□□□□ -0.8
CSDE1-218ENST00000610726 RGL3Q3MIN7 710 aa10.03□□□□□ -0.8
CSDE1-218ENST00000610726 ACIN1Q9UKV3 1341 aaKnown RBP10.03□□□□□ -0.8
CSDE1-218ENST00000610726 FANCD2Q9BXW9 1451 aa10.02□□□□□ -0.8
CSDE1-218ENST00000610726 MIER1Q8N108 512 aa10.02□□□□□ -0.81
CSDE1-218ENST00000610726 FAM9BQ8IZU0 186 aa10□□□□□ -0.81
CSDE1-218ENST00000610726 NCAPD3P42695 1498 aa10□□□□□ -0.81
CSDE1-218ENST00000610726 EIF4G2P78344 907 aaKnown RBP eCLIP9.98□□□□□ -0.81
CSDE1-218ENST00000610726 HNRNPUQ00839 825 aaKnown RBP eCLIP9.98□□□□□ -0.81
CSDE1-218ENST00000610726 FHOD3Q2V2M9 1422 aa9.98□□□□□ -0.81
CSDE1-218ENST00000610726 SALL2Q9Y467 1007 aaPredicted RBP9.97□□□□□ -0.81
CSDE1-218ENST00000610726 CLSPNQ9HAW4 1339 aa9.97□□□□□ -0.81
CSDE1-218ENST00000610726 DAXXQ9UER7 740 aaPredicted RBP9.96□□□□□ -0.81
CSDE1-218ENST00000610726 JPH4Q96JJ6 628 aa9.94□□□□□ -0.82
CSDE1-218ENST00000610726 FMN1Q68DA7 1419 aa9.94□□□□□ -0.82
CSDE1-218ENST00000610726 IGF1RP08069 1367 aa9.94□□□□□ -0.82
CSDE1-218ENST00000610726 RAD54L2Q9Y4B4 1467 aa9.94□□□□□ -0.82
CSDE1-218ENST00000610726 CARMIL2Q6F5E8 1435 aa9.93□□□□□ -0.82
CSDE1-218ENST00000610726 TMC1Q8TDI8 760 aa9.93□□□□□ -0.82
CSDE1-218ENST00000610726 SLC24A1O60721 1099 aa9.93□□□□□ -0.82
CSDE1-218ENST00000610726 MRS2Q9HD23 443 aa9.93□□□□□ -0.82
CSDE1-218ENST00000610726 FGD5Q6ZNL6 1462 aa9.93□□□□□ -0.82
CSDE1-218ENST00000610726 ARHGAP35Q9NRY4 1499 aa9.92□□□□□ -0.82
CSDE1-218ENST00000610726 NEFMP07197 916 aa9.91□□□□□ -0.82
CSDE1-218ENST00000610726 FOXD1Q16676 465 aa9.91□□□□□ -0.82
CSDE1-218ENST00000610726 BCL11AQ9H165 835 aa9.9□□□□□ -0.83
CSDE1-218ENST00000610726 CANXP27824 592 aaKnown RBP9.89□□□□□ -0.83
CSDE1-218ENST00000610726 SETD5Q9C0A6 1442 aa9.89□□□□□ -0.83
CSDE1-218ENST00000610726 FKBP8Q14318 412 aa9.89□□□□□ -0.83
CSDE1-218ENST00000610726 CARD11Q9BXL7 1154 aa9.89□□□□□ -0.83
CSDE1-218ENST00000610726 ARID4BQ4LE39 1312 aaPredicted RBP9.88□□□□□ -0.83
CSDE1-218ENST00000610726 SENP3-EIF4A1A0A087X0R7 540 aa9.88□□□□□ -0.83
CSDE1-218ENST00000610726 DNAJC5BQ9UF47 199 aa9.88□□□□□ -0.83
CSDE1-218ENST00000610726 NESP48681 1621 aa9.88□□□□□ -0.83
CSDE1-218ENST00000610726 RAB3GAP2Q9H2M9 1393 aa9.87□□□□□ -0.83
CSDE1-218ENST00000610726 PPP1R15AO75807 674 aaPredicted RBP9.86□□□□□ -0.83
CSDE1-218ENST00000610726 CFTRP13569 1480 aa9.86□□□□□ -0.83
CSDE1-218ENST00000610726 GAPVD1Q14C86 1478 aa9.86□□□□□ -0.83
CSDE1-218ENST00000610726 PKD2Q13563 968 aa9.85□□□□□ -0.83
CSDE1-218ENST00000610726 DCAF11Q8TEB1 546 aa9.85□□□□□ -0.83
CSDE1-218ENST00000610726 AQRO60306 1485 aaKnown RBP eCLIP9.85□□□□□ -0.832e-7■■■■□ 24.7
CSDE1-218ENST00000610726 BICRAQ9NZM4 1560 aa9.85□□□□□ -0.83
CSDE1-218ENST00000610726 HNRNPMP52272 730 aaKnown RBP eCLIP9.84□□□□□ -0.83
CSDE1-218ENST00000610726 GGT6Q6P531 493 aa9.83□□□□□ -0.84
CSDE1-218ENST00000610726 MLECQ14165 292 aa9.83□□□□□ -0.84
CSDE1-218ENST00000610726 EFCAB2Q5VUJ9 269 aa9.83□□□□□ -0.84
CSDE1-218ENST00000610726 CC2D2AQ9P2K1 1620 aa9.82□□□□□ -0.84
CSDE1-218ENST00000610726 MPHOSPH9Q99550 1183 aa9.82□□□□□ -0.84
CSDE1-218ENST00000610726 SYNJ1O43426 1573 aa9.82□□□□□ -0.84
CSDE1-218ENST00000610726 WDR43Q15061 677 aaKnown RBP eCLIP9.82□□□□□ -0.84
CSDE1-218ENST00000610726 TRHP20396 242 aaPredicted RBP9.8□□□□□ -0.84
CSDE1-218ENST00000610726 IRX6P78412 446 aaPredicted RBP9.8□□□□□ -0.84
CSDE1-218ENST00000610726 NUP155O75694 1391 aa9.8□□□□□ -0.84
CSDE1-218ENST00000610726 PLEKHG5O94827 1062 aa9.8□□□□□ -0.84
CSDE1-218ENST00000610726 TIMELESSQ9UNS1 1208 aa9.79□□□□□ -0.84
CSDE1-218ENST00000610726 ZBTB47Q9UFB7 747 aaPredicted RBP9.78□□□□□ -0.84
CSDE1-218ENST00000610726 PTPRGP23470 1445 aa9.78□□□□□ -0.84
CSDE1-218ENST00000610726 HMGXB3Q12766 1538 aa9.77□□□□□ -0.85
CSDE1-218ENST00000610726 ANKRD30AQ9BXX3 1397 aa9.77□□□□□ -0.85
CSDE1-218ENST00000610726 SCAF1Q9H7N4 1312 aaKnown RBP9.77□□□□□ -0.85
CSDE1-218ENST00000610726 KNSTRNQ9Y448 316 aa9.76□□□□□ -0.85
CSDE1-218ENST00000610726 CCDC18Q5T9S5 1454 aa9.76□□□□□ -0.85
CSDE1-218ENST00000610726 HSPA5P11021 654 aaKnown RBP9.76□□□□□ -0.85
CSDE1-218ENST00000610726 KIF3BO15066 747 aa9.75□□□□□ -0.85
CSDE1-218ENST00000610726 CUX1P39880 1505 aa9.75□□□□□ -0.85
CSDE1-218ENST00000610726 KANK1Q14678 1352 aa9.75□□□□□ -0.85
CSDE1-218ENST00000610726 CDCA8Q53HL2 280 aa9.74□□□□□ -0.85
CSDE1-218ENST00000610726 L3MBTL2Q969R5 705 aa9.74□□□□□ -0.85
CSDE1-218ENST00000610726 KIF21BO75037 1637 aa9.74□□□□□ -0.85
CSDE1-218ENST00000610726 CYB5RLQ6IPT4 315 aa9.74□□□□□ -0.85
CSDE1-218ENST00000610726 C14orf37Q86TY3 774 aa9.73□□□□□ -0.85
CSDE1-218ENST00000610726 POGKQ9P215 609 aa9.73□□□□□ -0.85
CSDE1-218ENST00000610726 ZNF644Q9H582 1327 aaPredicted RBP9.73□□□□□ -0.85
CSDE1-218ENST00000610726 SPAG9O60271 1321 aaKnown RBP9.73□□□□□ -0.85
CSDE1-218ENST00000610726 TOPBP1Q92547 1522 aa9.73□□□□□ -0.85
CSDE1-218ENST00000610726 TNNT2P45379 298 aaPredicted RBP9.73□□□□□ -0.85
CSDE1-218ENST00000610726 SAFB2Q14151 953 aaKnown RBP eCLIP9.73□□□□□ -0.85
CSDE1-218ENST00000610726 CC2D1BQ5T0F9 858 aaKnown RBP9.73□□□□□ -0.85
CSDE1-218ENST00000610726 POLA1P09884 1462 aaPredicted RBP9.72□□□□□ -0.85
CSDE1-218ENST00000610726 DHX57Q6P158 1386 aaKnown RBP9.72□□□□□ -0.85
CSDE1-218ENST00000610726 PPM1GO15355 546 aaPredicted RBP9.72□□□□□ -0.85
CSDE1-218ENST00000610726 OSCARQ8IYS5 282 aa9.72□□□□□ -0.85
CSDE1-218ENST00000610726 ARAP1Q96P48 1450 aa9.72□□□□□ -0.85
CSDE1-218ENST00000610726 CCDC136Q96JN2 1154 aa9.72□□□□□ -0.85
CSDE1-218ENST00000610726 PHLDB1Q86UU1 1377 aa9.71□□□□□ -0.86
CSDE1-218ENST00000610726 ZBTB7CA1YPR0 619 aa9.7□□□□□ -0.86
CSDE1-218ENST00000610726 RTL5Q5HYW3 569 aaPredicted RBP9.7□□□□□ -0.86
CSDE1-218ENST00000610726 NPM2Q86SE8 214 aaKnown RBP9.7□□□□□ -0.86
CSDE1-218ENST00000610726 PRXQ9BXM0 1461 aa9.7□□□□□ -0.86
CSDE1-218ENST00000610726 RSPH4AQ5TD94 716 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms