RNA–Protein interactions for RNA: ENST00000610556.4

SYNPO2-206, Transcript of synaptopodin 2, humanhuman

TSL 1 (best) BASIC

Gene SYNPO2, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-206ENST00000610556 CDK11AQ9UQ88 783 aaPredicted RBP9.55□□□□□ -0.88
SYNPO2-206ENST00000610556 RRP7BPQ9NSQ0 103 aa9.54□□□□□ -0.88
SYNPO2-206ENST00000610556 FAM9BQ8IZU0 186 aa9.54□□□□□ -0.88
SYNPO2-206ENST00000610556 MTUS2Q5JR59 1369 aa9.53□□□□□ -0.88
SYNPO2-206ENST00000610556 DHX57Q6P158 1386 aaKnown RBP9.53□□□□□ -0.88
SYNPO2-206ENST00000610556 FBLN2P98095 1184 aa9.51□□□□□ -0.89
SYNPO2-206ENST00000610556 ZNF777Q9ULD5 760 aaPredicted RBP9.51□□□□□ -0.89
SYNPO2-206ENST00000610556 RAB3GAP2Q9H2M9 1393 aa9.51□□□□□ -0.89
SYNPO2-206ENST00000610556 CUX2O14529 1486 aa9.5□□□□□ -0.89
SYNPO2-206ENST00000610556 SENP3-EIF4A1A0A087X0R7 540 aa9.5□□□□□ -0.89
SYNPO2-206ENST00000610556 CARMIL1Q5VZK9 1371 aa9.5□□□□□ -0.89
SYNPO2-206ENST00000610556 MRS2Q9HD23 443 aa9.46□□□□□ -0.9
SYNPO2-206ENST00000610556 SETD5Q9C0A6 1442 aa9.45□□□□□ -0.9
SYNPO2-206ENST00000610556 TSHZ2Q9NRE2 1034 aa9.44□□□□□ -0.9
SYNPO2-206ENST00000610556 EIF4G2P78344 907 aaKnown RBP eCLIP9.43□□□□□ -0.9
SYNPO2-206ENST00000610556 SALL2Q9Y467 1007 aaPredicted RBP9.43□□□□□ -0.9
SYNPO2-206ENST00000610556 KIF21BO75037 1637 aa9.43□□□□□ -0.9
SYNPO2-206ENST00000610556 SYNJ1O43426 1573 aa9.43□□□□□ -0.9
SYNPO2-206ENST00000610556 MYT1LQ9UL68 1186 aa9.43□□□□□ -0.9
SYNPO2-206ENST00000610556 ANP32EQ9BTT0 268 aa9.41□□□□□ -0.9
SYNPO2-206ENST00000610556 PPP1R15AO75807 674 aaPredicted RBP9.41□□□□□ -0.9
SYNPO2-206ENST00000610556 FOXD1Q16676 465 aa9.4□□□□□ -0.91
SYNPO2-206ENST00000610556 SLC4A1APQ9BWU0 796 aaKnown RBP9.4□□□□□ -0.91
SYNPO2-206ENST00000610556 FHAD1B1AJZ9 1412 aa9.39□□□□□ -0.91
SYNPO2-206ENST00000610556 KDM2AQ9Y2K7 1162 aa9.38□□□□□ -0.91
SYNPO2-206ENST00000610556 ARAP1Q96P48 1450 aa9.38□□□□□ -0.91
SYNPO2-206ENST00000610556 FHOD3Q2V2M9 1422 aa9.38□□□□□ -0.91
SYNPO2-206ENST00000610556 RTL5Q5HYW3 569 aaPredicted RBP9.37□□□□□ -0.91
SYNPO2-206ENST00000610556 NPM2Q86SE8 214 aaKnown RBP9.36□□□□□ -0.91
SYNPO2-206ENST00000610556 RBM19Q9Y4C8 960 aaKnown RBP9.36□□□□□ -0.91
SYNPO2-206ENST00000610556 DAXXQ9UER7 740 aaPredicted RBP9.36□□□□□ -0.91
SYNPO2-206ENST00000610556 TIMELESSQ9UNS1 1208 aa9.36□□□□□ -0.91
SYNPO2-206ENST00000610556 HSPA5P11021 654 aaKnown RBP9.35□□□□□ -0.91
SYNPO2-206ENST00000610556 TMC1Q8TDI8 760 aa9.35□□□□□ -0.91
SYNPO2-206ENST00000610556 BIVM-ERCC5R4GMW8 1640 aa9.35□□□□□ -0.91
SYNPO2-206ENST00000610556 IGF1RP08069 1367 aa9.35□□□□□ -0.91
SYNPO2-206ENST00000610556 CCER2I3L3R5 266 aa9.35□□□□□ -0.91
SYNPO2-206ENST00000610556 TDRD9Q8NDG6 1382 aaKnown RBP9.35□□□□□ -0.91
SYNPO2-206ENST00000610556 ARHGAP35Q9NRY4 1499 aa9.34□□□□□ -0.91
SYNPO2-206ENST00000610556 CCDC136Q96JN2 1154 aa9.34□□□□□ -0.91
SYNPO2-206ENST00000610556 B4GALNT3Q6L9W6 998 aa9.34□□□□□ -0.91
SYNPO2-206ENST00000610556 NBR1Q14596 966 aa9.34□□□□□ -0.91
SYNPO2-206ENST00000610556 PHLDB1Q86UU1 1377 aa9.33□□□□□ -0.92
SYNPO2-206ENST00000610556 CADPSQ9ULU8 1353 aa9.32□□□□□ -0.92
SYNPO2-206ENST00000610556 CFTRP13569 1480 aa9.32□□□□□ -0.92
SYNPO2-206ENST00000610556 DNAJC5BQ9UF47 199 aa9.32□□□□□ -0.92
SYNPO2-206ENST00000610556 KIF21AQ7Z4S6 1674 aa9.31□□□□□ -0.92
SYNPO2-206ENST00000610556 ANP32AP39687 249 aaKnown RBP9.31□□□□□ -0.92
SYNPO2-206ENST00000610556 WDR97A6NE52 1622 aa9.31□□□□□ -0.92
SYNPO2-206ENST00000610556 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.31□□□□□ -0.92
SYNPO2-206ENST00000610556 PRXQ9BXM0 1461 aa9.3□□□□□ -0.92
SYNPO2-206ENST00000610556 RRBP1Q9P2E9 1410 aaKnown RBP9.29□□□□□ -0.92
SYNPO2-206ENST00000610556 L3MBTL2Q969R5 705 aa9.28□□□□□ -0.92
SYNPO2-206ENST00000610556 CFDP1Q9UEE9 299 aaPredicted RBP9.28□□□□□ -0.92
SYNPO2-206ENST00000610556 RGL3Q3MIN7 710 aa9.28□□□□□ -0.92
SYNPO2-206ENST00000610556 MPHOSPH9Q99550 1183 aa9.28□□□□□ -0.92
SYNPO2-206ENST00000610556 PPP4R2Q9NY27 417 aa9.27□□□□□ -0.93
SYNPO2-206ENST00000610556 TSPY4P0CV99 314 aa9.27□□□□□ -0.93
SYNPO2-206ENST00000610556 TSPY10P0CW01 314 aa9.27□□□□□ -0.93
SYNPO2-206ENST00000610556 CHMP7Q8WUX9 453 aaPredicted RBP9.27□□□□□ -0.93
SYNPO2-206ENST00000610556 LAMC3Q9Y6N6 1575 aa9.27□□□□□ -0.93
SYNPO2-206ENST00000610556 FGD5Q6ZNL6 1462 aa9.25□□□□□ -0.93
SYNPO2-206ENST00000610556 FMN1Q68DA7 1419 aa9.25□□□□□ -0.93
SYNPO2-206ENST00000610556 CARD11Q9BXL7 1154 aa9.24□□□□□ -0.93
SYNPO2-206ENST00000610556 LRRC9Q6ZRR7 1453 aa9.24□□□□□ -0.93
SYNPO2-206ENST00000610556 TOP2BQ02880 1626 aa9.24□□□□□ -0.93
SYNPO2-206ENST00000610556 RAD54L2Q9Y4B4 1467 aa9.24□□□□□ -0.93
SYNPO2-206ENST00000610556 CUX1P39880 1505 aa9.24□□□□□ -0.93
SYNPO2-206ENST00000610556 SLC24A1O60721 1099 aa9.24□□□□□ -0.93
SYNPO2-206ENST00000610556 ERICH3Q5RHP9 1530 aa9.23□□□□□ -0.93
SYNPO2-206ENST00000610556 ZBTB47Q9UFB7 747 aaPredicted RBP9.23□□□□□ -0.93
SYNPO2-206ENST00000610556 THOC2Q8NI27 1593 aaKnown RBP9.23□□□□□ -0.93
SYNPO2-206ENST00000610556 PLEKHD1A6NEE1 506 aa9.21□□□□□ -0.94
SYNPO2-206ENST00000610556 CCDC18Q5T9S5 1454 aa9.21□□□□□ -0.94
SYNPO2-206ENST00000610556 FANCD2Q9BXW9 1451 aa9.2□□□□□ -0.94
SYNPO2-206ENST00000610556 PKD2Q13563 968 aa9.2□□□□□ -0.94
SYNPO2-206ENST00000610556 NESP48681 1621 aa9.2□□□□□ -0.94
SYNPO2-206ENST00000610556 DCAF11Q8TEB1 546 aa9.19□□□□□ -0.94
SYNPO2-206ENST00000610556 FGD6Q6ZV73 1430 aa9.18□□□□□ -0.94
SYNPO2-206ENST00000610556 BCL11AQ9H165 835 aa9.18□□□□□ -0.94
SYNPO2-206ENST00000610556 PRKRIP1Q9H875 184 aaPredicted RBP9.18□□□□□ -0.94
SYNPO2-206ENST00000610556 WASHC2AQ641Q2 1341 aa9.17□□□□□ -0.94
SYNPO2-206ENST00000610556 CANXP27824 592 aaKnown RBP9.17□□□□□ -0.94
SYNPO2-206ENST00000610556 ZNF644Q9H582 1327 aaPredicted RBP9.16□□□□□ -0.94
SYNPO2-206ENST00000610556 CC2D1BQ5T0F9 858 aaKnown RBP9.16□□□□□ -0.94
SYNPO2-206ENST00000610556 TARBP1Q13395 1621 aaKnown RBP9.16□□□□□ -0.94
SYNPO2-206ENST00000610556 CCDC184Q52MB2 194 aa9.16□□□□□ -0.94
SYNPO2-206ENST00000610556 CHGAP10645 457 aaKnown RBP9.15□□□□□ -0.95
SYNPO2-206ENST00000610556 NOP58Q9Y2X3 529 aaKnown RBP9.14□□□□□ -0.95
SYNPO2-206ENST00000610556 UACAQ9BZF9 1416 aa9.14□□□□□ -0.95
SYNPO2-206ENST00000610556 WDR43Q15061 677 aaKnown RBP eCLIP9.13□□□□□ -0.95
SYNPO2-206ENST00000610556 TIAM1Q13009 1591 aa9.13□□□□□ -0.95
SYNPO2-206ENST00000610556 LAS1LQ9Y4W2 734 aaKnown RBP9.13□□□□□ -0.95
SYNPO2-206ENST00000610556 URB2Q14146 1524 aaKnown RBP9.13□□□□□ -0.95
SYNPO2-206ENST00000610556 SENP3Q9H4L4 574 aaPredicted RBP9.12□□□□□ -0.95
SYNPO2-206ENST00000610556 CASKIN1Q8WXD9 1431 aa9.12□□□□□ -0.95
SYNPO2-206ENST00000610556 MYOM3Q5VTT5 1437 aa9.12□□□□□ -0.95
SYNPO2-206ENST00000610556 WDR62O43379 1518 aa9.12□□□□□ -0.95
SYNPO2-206ENST00000610556 DNMBPQ6XZF7 1577 aa9.11□□□□□ -0.95
SYNPO2-206ENST00000610556 NUP155O75694 1391 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms