RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 NUP160Q12769 1436 aa17.1■□□□□ 0.33
SYNE1-240ENST00000610489 CLASP1Q7Z460 1538 aa17.07■□□□□ 0.32
SYNE1-240ENST00000610489 CTTNBP2Q8WZ74 1663 aa17.03■□□□□ 0.32
SYNE1-240ENST00000610489 GOLGA3Q08378 1498 aa17■□□□□ 0.31
SYNE1-240ENST00000610489 KIAA0586Q9BVV6 1533 aa17■□□□□ 0.31
SYNE1-240ENST00000610489 IQGAP2Q13576 1575 aa16.97■□□□□ 0.31
SYNE1-240ENST00000610489 SHROOM2Q13796 1616 aa16.97■□□□□ 0.31
SYNE1-240ENST00000610489 EHMT2Q96KQ7 1210 aa16.93■□□□□ 0.3
SYNE1-240ENST00000610489 ADRA2BP18089 450 aa16.92■□□□□ 0.3
SYNE1-240ENST00000610489 DNAJC5Q9H3Z4 198 aa16.9■□□□□ 0.3
SYNE1-240ENST00000610489 UBTFP17480 764 aaKnown RBP16.89■□□□□ 0.29
SYNE1-240ENST00000610489 JPH4Q96JJ6 628 aa16.89■□□□□ 0.29
SYNE1-240ENST00000610489 UGGT2Q9NYU1 1516 aa16.88■□□□□ 0.29
SYNE1-240ENST00000610489 ARHGEF11O15085 1522 aa16.88■□□□□ 0.29
SYNE1-240ENST00000610489 RIMBP3CA6NJZ7 1639 aa16.86■□□□□ 0.29
SYNE1-240ENST00000610489 RIMBP3BA6NNM3 1639 aa16.86■□□□□ 0.29
SYNE1-240ENST00000610489 RIMBP3Q9UFD9 1639 aa16.86■□□□□ 0.29
SYNE1-240ENST00000610489 ERCC6L2Q5T890 1561 aa16.85■□□□□ 0.29
SYNE1-240ENST00000610489 PRG4Q92954 1404 aaPredicted RBP16.85■□□□□ 0.29
SYNE1-240ENST00000610489 TNIKQ9UKE5 1360 aa16.82■□□□□ 0.28
SYNE1-240ENST00000610489 DISP1Q96F81 1524 aa16.82■□□□□ 0.28
SYNE1-240ENST00000610489 KIAA0556O60303 1618 aa16.81■□□□□ 0.28
SYNE1-240ENST00000610489 LOC105371045A0A1W2PR82 267 aa16.8■□□□□ 0.28
SYNE1-240ENST00000610489 SAMD9Q5K651 1589 aa16.8■□□□□ 0.28
SYNE1-240ENST00000610489 CARMIL2Q6F5E8 1435 aa16.79■□□□□ 0.28
SYNE1-240ENST00000610489 EFCAB5A4FU69 1503 aa16.77■□□□□ 0.27
SYNE1-240ENST00000610489 ARAP1Q96P48 1450 aa16.76■□□□□ 0.27
SYNE1-240ENST00000610489 RANGAP1P46060 587 aaPredicted RBP16.74■□□□□ 0.27
SYNE1-240ENST00000610489 PPP6R1Q9UPN7 881 aa16.72■□□□□ 0.27
SYNE1-240ENST00000610489 ARHGAP35Q9NRY4 1499 aa16.71■□□□□ 0.27
SYNE1-240ENST00000610489 CLIP1P30622 1438 aa16.69■□□□□ 0.26
SYNE1-240ENST00000610489 CEP162Q5TB80 1403 aa16.69■□□□□ 0.26
SYNE1-240ENST00000610489 P3H3Q8IVL6 736 aa16.68■□□□□ 0.26
SYNE1-240ENST00000610489 PTPRGP23470 1445 aa16.68■□□□□ 0.26
SYNE1-240ENST00000610489 FHOD3Q2V2M9 1422 aa16.68■□□□□ 0.26
SYNE1-240ENST00000610489 KCNA4P22459 653 aa16.66■□□□□ 0.26
SYNE1-240ENST00000610489 CYB5RLQ6IPT4 315 aa16.65■□□□□ 0.26
SYNE1-240ENST00000610489 TTBK1Q5TCY1 1321 aaPredicted RBP16.64■□□□□ 0.25
SYNE1-240ENST00000610489 FOXD1Q16676 465 aa16.61■□□□□ 0.25
SYNE1-240ENST00000610489 ABCA8O94911 1581 aa16.6■□□□□ 0.25
SYNE1-240ENST00000610489 ADCY10Q96PN6 1610 aa16.6■□□□□ 0.25
SYNE1-240ENST00000610489 PLB1Q6P1J6 1458 aa16.59■□□□□ 0.25
SYNE1-240ENST00000610489 UACAQ9BZF9 1416 aa16.59■□□□□ 0.25
SYNE1-240ENST00000610489 FMN1Q68DA7 1419 aa16.58■□□□□ 0.24
SYNE1-240ENST00000610489 ABCC2Q92887 1545 aa16.58■□□□□ 0.24
SYNE1-240ENST00000610489 RAPGEF6Q8TEU7 1601 aa16.58■□□□□ 0.24
SYNE1-240ENST00000610489 UHRF1BP1LA0JNW5 1464 aa16.57■□□□□ 0.24
SYNE1-240ENST00000610489 PCF11O94913 1555 aaKnown RBP16.52■□□□□ 0.24
SYNE1-240ENST00000610489 HECW1Q76N89 1606 aa16.51■□□□□ 0.23
SYNE1-240ENST00000610489 NUP153P49790 1475 aaKnown RBP16.5■□□□□ 0.23
SYNE1-240ENST00000610489 KDM5BQ9UGL1 1544 aa16.49■□□□□ 0.23
SYNE1-240ENST00000610489 ZCCHC11Q5TAX3 1644 aaKnown RBP16.49■□□□□ 0.23
SYNE1-240ENST00000610489 CASKIN1Q8WXD9 1431 aa16.49■□□□□ 0.23
SYNE1-240ENST00000610489 FYCO1Q9BQS8 1478 aa16.48■□□□□ 0.23
SYNE1-240ENST00000610489 LRRIQ1Q96JM4 1722 aa16.47■□□□□ 0.23
SYNE1-240ENST00000610489 VPS8Q8N3P4 1428 aa16.47■□□□□ 0.23
SYNE1-240ENST00000610489 NPM1P06748 294 aaKnown RBP eCLIP16.44■□□□□ 0.22
SYNE1-240ENST00000610489 ATP10BO94823 1461 aa16.44■□□□□ 0.22
SYNE1-240ENST00000610489 MAPKBP1O60336 1514 aa16.43■□□□□ 0.22
SYNE1-240ENST00000610489 EPRSP07814 1512 aaKnown RBP16.43■□□□□ 0.22
SYNE1-240ENST00000610489 ARID3CA6NKF2 412 aa16.42■□□□□ 0.22
SYNE1-240ENST00000610489 CDK13Q14004 1512 aaKnown RBP16.42■□□□□ 0.22
SYNE1-240ENST00000610489 ATP1B4Q9UN42 357 aaPredicted RBP16.41■□□□□ 0.22
SYNE1-240ENST00000610489 CCDC18Q5T9S5 1454 aa16.4■□□□□ 0.22
SYNE1-240ENST00000610489 ASXL2Q76L83 1435 aa16.38■□□□□ 0.21
SYNE1-240ENST00000610489 CFAP43Q8NDM7 1665 aa16.36■□□□□ 0.21
SYNE1-240ENST00000610489 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.36■□□□□ 0.21
SYNE1-240ENST00000610489 HNRNPUL2Q1KMD3 747 aaKnown RBP16.36■□□□□ 0.21
SYNE1-240ENST00000610489 WDR7Q9Y4E6 1490 aa16.35■□□□□ 0.21
SYNE1-240ENST00000610489 TIAM1Q13009 1591 aa16.32■□□□□ 0.2
SYNE1-240ENST00000610489 KIF13AQ9H1H9 1805 aa16.32■□□□□ 0.2
SYNE1-240ENST00000610489 DIP2BQ9P265 1576 aa16.31■□□□□ 0.2
SYNE1-240ENST00000610489 MAP3K1Q13233 1512 aa16.31■□□□□ 0.2
SYNE1-240ENST00000610489 MAGI3Q5TCQ9 1506 aa16.3■□□□□ 0.2
SYNE1-240ENST00000610489 ABCC10Q5T3U5 1492 aa16.3■□□□□ 0.2
SYNE1-240ENST00000610489 CDK11AQ9UQ88 783 aaPredicted RBP16.3■□□□□ 0.2
SYNE1-240ENST00000610489 PLEKHD1A6NEE1 506 aa16.29■□□□□ 0.2
SYNE1-240ENST00000610489 TROQ12816 1431 aaPredicted RBP16.27■□□□□ 0.2
SYNE1-240ENST00000610489 GLI2P10070 1586 aa16.26■□□□□ 0.19
SYNE1-240ENST00000610489 EHBP1L1Q8N3D4 1523 aa16.26■□□□□ 0.19
SYNE1-240ENST00000610489 KIF14Q15058 1648 aa16.25■□□□□ 0.19
SYNE1-240ENST00000610489 APLP2Q06481 763 aa16.24■□□□□ 0.19
SYNE1-240ENST00000610489 KCNH8Q96L42 1107 aa16.24■□□□□ 0.19
SYNE1-240ENST00000610489 ABCA9Q8IUA7 1624 aa16.24■□□□□ 0.19
SYNE1-240ENST00000610489 MTUS2Q5JR59 1369 aa16.23■□□□□ 0.19
SYNE1-240ENST00000610489 LRRC9Q6ZRR7 1453 aa16.23■□□□□ 0.19
SYNE1-240ENST00000610489 MAP3K4Q9Y6R4 1608 aa16.22■□□□□ 0.19
SYNE1-240ENST00000610489 FAM69CQ0P6D2 419 aa16.22■□□□□ 0.19
SYNE1-240ENST00000610489 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.22■□□□□ 0.19
SYNE1-240ENST00000610489 TRHP20396 242 aaPredicted RBP16.21■□□□□ 0.19
SYNE1-240ENST00000610489 TTC37Q6PGP7 1564 aa16.21■□□□□ 0.19
SYNE1-240ENST00000610489 SUPT6HQ7KZ85 1726 aaKnown RBP16.19■□□□□ 0.18
SYNE1-240ENST00000610489 TSPOAP1O95153 1857 aa16.19■□□□□ 0.18
SYNE1-240ENST00000610489 KANK4Q5T7N3 995 aaPredicted RBP16.18■□□□□ 0.18
SYNE1-240ENST00000610489 MYO5CQ9NQX4 1742 aa16.17■□□□□ 0.18
SYNE1-240ENST00000610489 PPRC1Q5VV67 1664 aaKnown RBP16.16■□□□□ 0.18
SYNE1-240ENST00000610489 CD109Q6YHK3 1445 aa16.15■□□□□ 0.18
SYNE1-240ENST00000610489 CDC42BPAQ5VT25 1732 aa16.15■□□□□ 0.18
SYNE1-240ENST00000610489 NCOA2Q15596 1464 aa16.14■□□□□ 0.17
SYNE1-240ENST00000610489 PREX2Q70Z35 1606 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms