RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 KIAA0586Q9BVV6 1533 aa32.39■■■□□ 2.78
UPF1-212ENST00000601689 SHROOM2Q13796 1616 aa32.39■■■□□ 2.78
UPF1-212ENST00000601689 EEA1Q15075 1411 aa32.32■■■□□ 2.76
UPF1-212ENST00000601689 PRG4Q92954 1404 aaPredicted RBP32.32■■■□□ 2.76
UPF1-212ENST00000601689 CHIC1Q5VXU3 224 aa32.3■■■□□ 2.76
UPF1-212ENST00000601689 CSRNP3Q8WYN3 585 aa32.26■■■□□ 2.75
UPF1-212ENST00000601689 ERCC6L2Q5T890 1561 aa32.23■■■□□ 2.75
UPF1-212ENST00000601689 IQGAP2Q13576 1575 aa32.2■■■□□ 2.75
UPF1-212ENST00000601689 PRXQ9BXM0 1461 aa32.18■■■□□ 2.74
UPF1-212ENST00000601689 CARMIL2Q6F5E8 1435 aa32.16■■■□□ 2.74
UPF1-212ENST00000601689 FAM9AQ8IZU1 332 aaPredicted RBP32.12■■■□□ 2.73
UPF1-212ENST00000601689 CTTNBP2Q8WZ74 1663 aa32.1■■■□□ 2.73
UPF1-212ENST00000601689 TRHP20396 242 aaPredicted RBP32■■■□□ 2.71
UPF1-212ENST00000601689 UGGT2Q9NYU1 1516 aa31.99■■■□□ 2.71
UPF1-212ENST00000601689 TNIKQ9UKE5 1360 aa31.98■■■□□ 2.71
UPF1-212ENST00000601689 NPM1P06748 294 aaKnown RBP eCLIP31.98■■■□□ 2.71
UPF1-212ENST00000601689 PTPRGP23470 1445 aa31.97■■■□□ 2.71
UPF1-212ENST00000601689 TTBK1Q5TCY1 1321 aaPredicted RBP31.95■■■□□ 2.7
UPF1-212ENST00000601689 GOLGA3Q08378 1498 aa31.93■■■□□ 2.7
UPF1-212ENST00000601689 KIF21BO75037 1637 aa31.89■■■□□ 2.7
UPF1-212ENST00000601689 DISP1Q96F81 1524 aa31.88■■■□□ 2.69
UPF1-212ENST00000601689 KIAA0556O60303 1618 aa31.86■■■□□ 2.69
UPF1-212ENST00000601689 UBTFP17480 764 aaKnown RBP31.77■■■□□ 2.68
UPF1-212ENST00000601689 ADCY10Q96PN6 1610 aa31.77■■■□□ 2.68
UPF1-212ENST00000601689 UACAQ9BZF9 1416 aa31.74■■■□□ 2.67
UPF1-212ENST00000601689 EHMT2Q96KQ7 1210 aa31.69■■■□□ 2.66
UPF1-212ENST00000601689 UHRF1BP1LA0JNW5 1464 aa31.67■■■□□ 2.66
UPF1-212ENST00000601689 RANGAP1P46060 587 aaPredicted RBP31.67■■■□□ 2.66
UPF1-212ENST00000601689 P3H3Q8IVL6 736 aa31.65■■■□□ 2.66
UPF1-212ENST00000601689 ABCC2Q92887 1545 aa31.65■■■□□ 2.66
UPF1-212ENST00000601689 MAPKBP1O60336 1514 aa31.64■■■□□ 2.66
UPF1-212ENST00000601689 SAMD9Q5K651 1589 aa31.6■■■□□ 2.65
UPF1-212ENST00000601689 EFCAB5A4FU69 1503 aa31.54■■■□□ 2.64
UPF1-212ENST00000601689 PLB1Q6P1J6 1458 aa31.52■■■□□ 2.64
UPF1-212ENST00000601689 FAM69CQ0P6D2 419 aa31.52■■■□□ 2.64
UPF1-212ENST00000601689 KDM5BQ9UGL1 1544 aa31.5■■■□□ 2.63
UPF1-212ENST00000601689 ABCC10Q5T3U5 1492 aa31.5■■■□□ 2.63
UPF1-212ENST00000601689 ABCA8O94911 1581 aa31.49■■■□□ 2.63
UPF1-212ENST00000601689 KIF13AQ9H1H9 1805 aa31.47■■■□□ 2.63
UPF1-212ENST00000601689 ZCCHC11Q5TAX3 1644 aaKnown RBP31.46■■■□□ 2.63
UPF1-212ENST00000601689 ASXL2Q76L83 1435 aa31.45■■■□□ 2.63
UPF1-212ENST00000601689 FHOD3Q2V2M9 1422 aa31.43■■■□□ 2.62
UPF1-212ENST00000601689 DIP2BQ9P265 1576 aa31.41■■■□□ 2.62
UPF1-212ENST00000601689 RAPGEF6Q8TEU7 1601 aa31.38■■■□□ 2.61
UPF1-212ENST00000601689 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.34■■■□□ 2.61
UPF1-212ENST00000601689 HNRNPUL2Q1KMD3 747 aaKnown RBP31.34■■■□□ 2.61
UPF1-212ENST00000601689 FMN1Q68DA7 1419 aa31.31■■■□□ 2.6
UPF1-212ENST00000601689 WDR7Q9Y4E6 1490 aa31.29■■■□□ 2.6
UPF1-212ENST00000601689 ARID3CA6NKF2 412 aa31.28■■■□□ 2.6
UPF1-212ENST00000601689 ARHGAP35Q9NRY4 1499 aa31.27■■■□□ 2.6
UPF1-212ENST00000601689 GLI2P10070 1586 aa31.26■■■□□ 2.6
UPF1-212ENST00000601689 TSPOAP1O95153 1857 aa31.26■■■□□ 2.59
UPF1-212ENST00000601689 ATP10BO94823 1461 aa31.25■■■□□ 2.59
UPF1-212ENST00000601689 EPRSP07814 1512 aaKnown RBP31.24■■■□□ 2.59
UPF1-212ENST00000601689 KCNH8Q96L42 1107 aa31.22■■■□□ 2.59
UPF1-212ENST00000601689 ATP1B4Q9UN42 357 aaPredicted RBP31.21■■■□□ 2.59
UPF1-212ENST00000601689 NUP153P49790 1475 aaKnown RBP31.18■■■□□ 2.58
UPF1-212ENST00000601689 CLIP1P30622 1438 aa31.15■■■□□ 2.58
UPF1-212ENST00000601689 PLEKHD1A6NEE1 506 aa31.15■■■□□ 2.58
UPF1-212ENST00000601689 HECW1Q76N89 1606 aa31.12■■■□□ 2.57
UPF1-212ENST00000601689 MAP3K4Q9Y6R4 1608 aa31.1■■■□□ 2.57
UPF1-212ENST00000601689 TEX14Q8IWB6 1497 aa31.1■■■□□ 2.57
UPF1-212ENST00000601689 CDK11AQ9UQ88 783 aaPredicted RBP31.09■■■□□ 2.57
UPF1-212ENST00000601689 CFAP43Q8NDM7 1665 aa31.08■■■□□ 2.57
UPF1-212ENST00000601689 CD109Q6YHK3 1445 aa31.06■■■□□ 2.56
UPF1-212ENST00000601689 KDM6BO15054 1643 aa31.02■■■□□ 2.56
UPF1-212ENST00000601689 PPRC1Q5VV67 1664 aaKnown RBP30.98■■■□□ 2.55
UPF1-212ENST00000601689 LOC105371045A0A1W2PR82 267 aa30.97■■■□□ 2.55
UPF1-212ENST00000601689 CEP162Q5TB80 1403 aa30.97■■■□□ 2.55
UPF1-212ENST00000601689 CASKIN1Q8WXD9 1431 aa30.97■■■□□ 2.55
UPF1-212ENST00000601689 CDK13Q14004 1512 aaKnown RBP30.96■■■□□ 2.55
UPF1-212ENST00000601689 MAGI3Q5TCQ9 1506 aa30.96■■■□□ 2.55
UPF1-212ENST00000601689 ABCA9Q8IUA7 1624 aa30.94■■■□□ 2.54
UPF1-212ENST00000601689 CCDC18Q5T9S5 1454 aa30.93■■■□□ 2.54
UPF1-212ENST00000601689 FYCO1Q9BQS8 1478 aa30.9■■■□□ 2.54
UPF1-212ENST00000601689 PCF11O94913 1555 aaKnown RBP30.9■■■□□ 2.54
UPF1-212ENST00000601689 PHLDB1Q86UU1 1377 aa30.84■■■□□ 2.53
UPF1-212ENST00000601689 LRRIQ1Q96JM4 1722 aa30.8■■■□□ 2.52
UPF1-212ENST00000601689 TROQ12816 1431 aaPredicted RBP30.8■■■□□ 2.52
UPF1-212ENST00000601689 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.78■■■□□ 2.52
UPF1-212ENST00000601689 KIF14Q15058 1648 aa30.76■■■□□ 2.52
UPF1-212ENST00000601689 NEO1Q92859 1461 aa30.75■■■□□ 2.51
UPF1-212ENST00000601689 CFAP74Q9C0B2 1584 aa30.72■■■□□ 2.51
UPF1-212ENST00000601689 TTC37Q6PGP7 1564 aa30.7■■■□□ 2.5
UPF1-212ENST00000601689 ARAP3Q8WWN8 1544 aa30.68■■■□□ 2.5
UPF1-212ENST00000601689 FANCAO15360 1455 aa30.67■■■□□ 2.5
UPF1-212ENST00000601689 COL17A1Q9UMD9 1497 aaPredicted RBP30.67■■■□□ 2.5
UPF1-212ENST00000601689 MYO5CQ9NQX4 1742 aa30.67■■■□□ 2.5
UPF1-212ENST00000601689 PLCH2O75038 1416 aa30.64■■■□□ 2.5
UPF1-212ENST00000601689 EFCAB2Q5VUJ9 269 aa30.63■■■□□ 2.49
UPF1-212ENST00000601689 MTUS2Q5JR59 1369 aa30.63■■■□□ 2.49
UPF1-212ENST00000601689 VPS8Q8N3P4 1428 aa30.62■■■□□ 2.49
UPF1-212ENST00000601689 AKNAQ7Z591 1439 aa30.61■■■□□ 2.49
UPF1-212ENST00000601689 ARHGAP5Q13017 1502 aa30.55■■■□□ 2.48
UPF1-212ENST00000601689 DENND4BO75064 1496 aaPredicted RBP30.55■■■□□ 2.48
UPF1-212ENST00000601689 APLP2Q06481 763 aa30.53■■■□□ 2.48
UPF1-212ENST00000601689 RAPGEF3O95398 923 aa30.52■■■□□ 2.48
UPF1-212ENST00000601689 AEBP2Q6ZN18 517 aaPredicted RBP30.51■■■□□ 2.47
UPF1-212ENST00000601689 ADGRL1O94910 1474 aa30.5■■■□□ 2.47
UPF1-212ENST00000601689 EHBP1L1Q8N3D4 1523 aa30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms