RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 RIMBP3BA6NNM3 1639 aa31.96■■■□□ 2.71
UPF1-209ENST00000600310 RIMBP3Q9UFD9 1639 aa31.96■■■□□ 2.71
UPF1-209ENST00000600310 JPH4Q96JJ6 628 aa31.94■■■□□ 2.7
UPF1-209ENST00000600310 ARHGEF11O15085 1522 aa31.93■■■□□ 2.7
UPF1-209ENST00000600310 KIF21BO75037 1637 aa31.89■■■□□ 2.7
UPF1-209ENST00000600310 SHROOM2Q13796 1616 aa31.89■■■□□ 2.7
UPF1-209ENST00000600310 IQGAP2Q13576 1575 aa31.82■■■□□ 2.68
UPF1-209ENST00000600310 PRG4Q92954 1404 aaPredicted RBP31.81■■■□□ 2.68
UPF1-209ENST00000600310 GOLGA3Q08378 1498 aa31.77■■■□□ 2.68
UPF1-209ENST00000600310 ERCC6L2Q5T890 1561 aa31.76■■■□□ 2.67
UPF1-209ENST00000600310 CTTNBP2Q8WZ74 1663 aa31.74■■■□□ 2.67
UPF1-209ENST00000600310 ARAP1Q96P48 1450 aa31.72■■■□□ 2.67
UPF1-209ENST00000600310 UGGT2Q9NYU1 1516 aa31.7■■■□□ 2.67
UPF1-209ENST00000600310 EHMT2Q96KQ7 1210 aa31.69■■■□□ 2.66
UPF1-209ENST00000600310 UBTFP17480 764 aaKnown RBP31.68■■■□□ 2.66
UPF1-209ENST00000600310 CYB5RLQ6IPT4 315 aa31.68■■■□□ 2.66
UPF1-209ENST00000600310 CARMIL2Q6F5E8 1435 aa31.65■■■□□ 2.66
UPF1-209ENST00000600310 DISP1Q96F81 1524 aa31.61■■■□□ 2.65
UPF1-209ENST00000600310 TNIKQ9UKE5 1360 aa31.54■■■□□ 2.64
UPF1-209ENST00000600310 KIAA0556O60303 1618 aa31.52■■■□□ 2.64
UPF1-209ENST00000600310 PTPRGP23470 1445 aa31.49■■■□□ 2.63
UPF1-209ENST00000600310 RANGAP1P46060 587 aaPredicted RBP31.46■■■□□ 2.63
UPF1-209ENST00000600310 SAMD9Q5K651 1589 aa31.42■■■□□ 2.62
UPF1-209ENST00000600310 P3H3Q8IVL6 736 aa31.4■■■□□ 2.62
UPF1-209ENST00000600310 TTBK1Q5TCY1 1321 aaPredicted RBP31.4■■■□□ 2.62
UPF1-209ENST00000600310 LOC105371045A0A1W2PR82 267 aa31.38■■■□□ 2.61
UPF1-209ENST00000600310 EFCAB5A4FU69 1503 aa31.37■■■□□ 2.61
UPF1-209ENST00000600310 TRHP20396 242 aaPredicted RBP31.34■■■□□ 2.61
UPF1-209ENST00000600310 UACAQ9BZF9 1416 aa31.29■■■□□ 2.6
UPF1-209ENST00000600310 ARHGAP35Q9NRY4 1499 aa31.28■■■□□ 2.6
UPF1-209ENST00000600310 FHOD3Q2V2M9 1422 aa31.28■■■□□ 2.6
UPF1-209ENST00000600310 UHRF1BP1LA0JNW5 1464 aa31.24■■■□□ 2.59
UPF1-209ENST00000600310 ADCY10Q96PN6 1610 aa31.23■■■□□ 2.59
UPF1-209ENST00000600310 PLB1Q6P1J6 1458 aa31.21■■■□□ 2.59
UPF1-209ENST00000600310 CLIP1P30622 1438 aa31.21■■■□□ 2.59
UPF1-209ENST00000600310 ABCC2Q92887 1545 aa31.19■■■□□ 2.58
UPF1-209ENST00000600310 ABCA8O94911 1581 aa31.18■■■□□ 2.58
UPF1-209ENST00000600310 NPM1P06748 294 aaKnown RBP eCLIP31.16■■■□□ 2.58
UPF1-209ENST00000600310 CEP162Q5TB80 1403 aa31.15■■■□□ 2.58
UPF1-209ENST00000600310 FMN1Q68DA7 1419 aa31.1■■■□□ 2.57
UPF1-209ENST00000600310 KDM5BQ9UGL1 1544 aa31.08■■■□□ 2.57
UPF1-209ENST00000600310 RAPGEF6Q8TEU7 1601 aa31.05■■■□□ 2.56
UPF1-209ENST00000600310 MAPKBP1O60336 1514 aa31■■■□□ 2.55
UPF1-209ENST00000600310 NUP153P49790 1475 aaKnown RBP30.98■■■□□ 2.55
UPF1-209ENST00000600310 ATP10BO94823 1461 aa30.95■■■□□ 2.55
UPF1-209ENST00000600310 ZCCHC11Q5TAX3 1644 aaKnown RBP30.95■■■□□ 2.55
UPF1-209ENST00000600310 ARID3CA6NKF2 412 aa30.93■■■□□ 2.54
UPF1-209ENST00000600310 ASXL2Q76L83 1435 aa30.91■■■□□ 2.54
UPF1-209ENST00000600310 CASKIN1Q8WXD9 1431 aa30.9■■■□□ 2.54
UPF1-209ENST00000600310 ATP1B4Q9UN42 357 aaPredicted RBP30.88■■■□□ 2.53
UPF1-209ENST00000600310 HECW1Q76N89 1606 aa30.86■■■□□ 2.53
UPF1-209ENST00000600310 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.84■■■□□ 2.53
UPF1-209ENST00000600310 HNRNPUL2Q1KMD3 747 aaKnown RBP30.84■■■□□ 2.53
UPF1-209ENST00000600310 PCF11O94913 1555 aaKnown RBP30.83■■■□□ 2.53
UPF1-209ENST00000600310 ABCC10Q5T3U5 1492 aa30.83■■■□□ 2.53
UPF1-209ENST00000600310 FYCO1Q9BQS8 1478 aa30.82■■■□□ 2.52
UPF1-209ENST00000600310 EPRSP07814 1512 aaKnown RBP30.81■■■□□ 2.52
UPF1-209ENST00000600310 WDR7Q9Y4E6 1490 aa30.81■■■□□ 2.52
UPF1-209ENST00000600310 FAM69CQ0P6D2 419 aa30.77■■■□□ 2.52
UPF1-209ENST00000600310 CDK13Q14004 1512 aaKnown RBP30.77■■■□□ 2.52
UPF1-209ENST00000600310 VPS8Q8N3P4 1428 aa30.76■■■□□ 2.51
UPF1-209ENST00000600310 DIP2BQ9P265 1576 aa30.75■■■□□ 2.51
UPF1-209ENST00000600310 PLEKHD1A6NEE1 506 aa30.74■■■□□ 2.51
UPF1-209ENST00000600310 CCDC18Q5T9S5 1454 aa30.72■■■□□ 2.51
UPF1-209ENST00000600310 KCNH8Q96L42 1107 aa30.69■■■□□ 2.5
UPF1-209ENST00000600310 CDK11AQ9UQ88 783 aaPredicted RBP30.69■■■□□ 2.5
UPF1-209ENST00000600310 GLI2P10070 1586 aa30.68■■■□□ 2.5
UPF1-209ENST00000600310 KIF13AQ9H1H9 1805 aa30.67■■■□□ 2.5
UPF1-209ENST00000600310 LRRIQ1Q96JM4 1722 aa30.66■■■□□ 2.5
UPF1-209ENST00000600310 TROQ12816 1431 aaPredicted RBP30.58■■■□□ 2.49
UPF1-209ENST00000600310 MAP3K4Q9Y6R4 1608 aa30.51■■■□□ 2.48
UPF1-209ENST00000600310 MAGI3Q5TCQ9 1506 aa30.51■■■□□ 2.47
UPF1-209ENST00000600310 CD109Q6YHK3 1445 aa30.5■■■□□ 2.47
UPF1-209ENST00000600310 ABCA9Q8IUA7 1624 aa30.49■■■□□ 2.47
UPF1-209ENST00000600310 CFAP43Q8NDM7 1665 aa30.46■■■□□ 2.47
UPF1-209ENST00000600310 MAP3K1Q13233 1512 aa30.46■■■□□ 2.47
UPF1-209ENST00000600310 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.46■■■□□ 2.47
UPF1-209ENST00000600310 MTUS2Q5JR59 1369 aa30.45■■■□□ 2.47
UPF1-209ENST00000600310 AEBP2Q6ZN18 517 aaPredicted RBP30.45■■■□□ 2.47
UPF1-209ENST00000600310 TIAM1Q13009 1591 aa30.45■■■□□ 2.46
UPF1-209ENST00000600310 KIF14Q15058 1648 aa30.42■■■□□ 2.46
UPF1-209ENST00000600310 APLP2Q06481 763 aa30.41■■■□□ 2.46
UPF1-209ENST00000600310 TSPOAP1O95153 1857 aa30.4■■■□□ 2.46
UPF1-209ENST00000600310 PPRC1Q5VV67 1664 aaKnown RBP30.39■■■□□ 2.46
UPF1-209ENST00000600310 TEX14Q8IWB6 1497 aa30.38■■■□□ 2.45
UPF1-209ENST00000600310 EHBP1L1Q8N3D4 1523 aa30.37■■■□□ 2.45
UPF1-209ENST00000600310 TTC37Q6PGP7 1564 aa30.37■■■□□ 2.45
UPF1-209ENST00000600310 LRRC9Q6ZRR7 1453 aa30.35■■■□□ 2.45
UPF1-209ENST00000600310 KANK4Q5T7N3 995 aaPredicted RBP30.33■■■□□ 2.45
UPF1-209ENST00000600310 PLCH2O75038 1416 aa30.32■■■□□ 2.44
UPF1-209ENST00000600310 PHLDB1Q86UU1 1377 aa30.26■■■□□ 2.43
UPF1-209ENST00000600310 ARAP3Q8WWN8 1544 aa30.25■■■□□ 2.43
UPF1-209ENST00000600310 NEO1Q92859 1461 aa30.25■■■□□ 2.43
UPF1-209ENST00000600310 FANCAO15360 1455 aa30.23■■■□□ 2.43
UPF1-209ENST00000600310 EFCAB2Q5VUJ9 269 aa30.22■■■□□ 2.43
UPF1-209ENST00000600310 MYO5CQ9NQX4 1742 aa30.22■■■□□ 2.43
UPF1-209ENST00000600310 GPATCH8Q9UKJ3 1502 aaKnown RBP30.22■■■□□ 2.43
UPF1-209ENST00000600310 NCOA2Q15596 1464 aa30.21■■■□□ 2.43
UPF1-209ENST00000600310 CCNB3Q8WWL7 1395 aa30.21■■■□□ 2.43
UPF1-209ENST00000600310 SUPT6HQ7KZ85 1726 aaKnown RBP30.19■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms