RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 RIMBP3CA6NJZ7 1639 aa22.9■■□□□ 1.26
VRK3-219ENST00000600137 RIMBP3BA6NNM3 1639 aa22.9■■□□□ 1.26
VRK3-219ENST00000600137 SHROOM2Q13796 1616 aa22.9■■□□□ 1.26
VRK3-219ENST00000600137 RIMBP3Q9UFD9 1639 aa22.9■■□□□ 1.26
VRK3-219ENST00000600137 JPH4Q96JJ6 628 aa22.88■■□□□ 1.25
VRK3-219ENST00000600137 ERCC6L2Q5T890 1561 aa22.84■■□□□ 1.25
VRK3-219ENST00000600137 KIF21BO75037 1637 aa22.8■■□□□ 1.24
VRK3-219ENST00000600137 PRG4Q92954 1404 aaPredicted RBP22.78■■□□□ 1.24
VRK3-219ENST00000600137 ARAP1Q96P48 1450 aa22.78■■□□□ 1.24
VRK3-219ENST00000600137 IQGAP2Q13576 1575 aa22.77■■□□□ 1.24
VRK3-219ENST00000600137 CTTNBP2Q8WZ74 1663 aa22.74■■□□□ 1.23
VRK3-219ENST00000600137 CYB5RLQ6IPT4 315 aa22.7■■□□□ 1.22
VRK3-219ENST00000600137 UGGT2Q9NYU1 1516 aa22.7■■□□□ 1.22
VRK3-219ENST00000600137 DISP1Q96F81 1524 aa22.67■■□□□ 1.22
VRK3-219ENST00000600137 GOLGA3Q08378 1498 aa22.66■■□□□ 1.22
VRK3-219ENST00000600137 EHMT2Q96KQ7 1210 aa22.63■■□□□ 1.21
VRK3-219ENST00000600137 CARMIL2Q6F5E8 1435 aa22.59■■□□□ 1.21
VRK3-219ENST00000600137 KIAA0556O60303 1618 aa22.57■■□□□ 1.2
VRK3-219ENST00000600137 UBTFP17480 764 aaKnown RBP22.57■■□□□ 1.2
VRK3-219ENST00000600137 TNIKQ9UKE5 1360 aa22.55■■□□□ 1.2
VRK3-219ENST00000600137 PTPRGP23470 1445 aa22.53■■□□□ 1.2
VRK3-219ENST00000600137 SAMD9Q5K651 1589 aa22.52■■□□□ 1.2
VRK3-219ENST00000600137 LOC105371045A0A1W2PR82 267 aa22.46■■□□□ 1.19
VRK3-219ENST00000600137 P3H3Q8IVL6 736 aa22.46■■□□□ 1.19
VRK3-219ENST00000600137 RANGAP1P46060 587 aaPredicted RBP22.45■■□□□ 1.18
VRK3-219ENST00000600137 TTBK1Q5TCY1 1321 aaPredicted RBP22.43■■□□□ 1.18
VRK3-219ENST00000600137 ADCY10Q96PN6 1610 aa22.42■■□□□ 1.18
VRK3-219ENST00000600137 ARHGAP35Q9NRY4 1499 aa22.4■■□□□ 1.18
VRK3-219ENST00000600137 EFCAB5A4FU69 1503 aa22.39■■□□□ 1.17
VRK3-219ENST00000600137 UACAQ9BZF9 1416 aa22.39■■□□□ 1.17
VRK3-219ENST00000600137 FHOD3Q2V2M9 1422 aa22.38■■□□□ 1.17
VRK3-219ENST00000600137 UHRF1BP1LA0JNW5 1464 aa22.37■■□□□ 1.17
VRK3-219ENST00000600137 PLB1Q6P1J6 1458 aa22.36■■□□□ 1.17
VRK3-219ENST00000600137 ABCA8O94911 1581 aa22.35■■□□□ 1.17
VRK3-219ENST00000600137 ABCC2Q92887 1545 aa22.33■■□□□ 1.17
VRK3-219ENST00000600137 KDM5BQ9UGL1 1544 aa22.28■■□□□ 1.16
VRK3-219ENST00000600137 CLIP1P30622 1438 aa22.27■■□□□ 1.16
VRK3-219ENST00000600137 NPM1P06748 294 aaKnown RBP eCLIP22.23■■□□□ 1.15
VRK3-219ENST00000600137 CEP162Q5TB80 1403 aa22.23■■□□□ 1.15
VRK3-219ENST00000600137 RAPGEF6Q8TEU7 1601 aa22.22■■□□□ 1.15
VRK3-219ENST00000600137 MAPKBP1O60336 1514 aa22.21■■□□□ 1.15
VRK3-219ENST00000600137 ZCCHC11Q5TAX3 1644 aaKnown RBP22.2■■□□□ 1.14
VRK3-219ENST00000600137 ATP10BO94823 1461 aa22.19■■□□□ 1.14
VRK3-219ENST00000600137 NUP153P49790 1475 aaKnown RBP22.19■■□□□ 1.14
VRK3-219ENST00000600137 FMN1Q68DA7 1419 aa22.18■■□□□ 1.14
VRK3-219ENST00000600137 ASXL2Q76L83 1435 aa22.14■■□□□ 1.14
VRK3-219ENST00000600137 ABCC10Q5T3U5 1492 aa22.11■■□□□ 1.13
VRK3-219ENST00000600137 ARID3CA6NKF2 412 aa22.11■■□□□ 1.13
VRK3-219ENST00000600137 TRHP20396 242 aaPredicted RBP22.1■■□□□ 1.13
VRK3-219ENST00000600137 KIF13AQ9H1H9 1805 aa22.09■■□□□ 1.13
VRK3-219ENST00000600137 CASKIN1Q8WXD9 1431 aa22.08■■□□□ 1.13
VRK3-219ENST00000600137 DIP2BQ9P265 1576 aa22.07■■□□□ 1.12
VRK3-219ENST00000600137 LRRIQ1Q96JM4 1722 aa22.06■■□□□ 1.12
VRK3-219ENST00000600137 PCF11O94913 1555 aaKnown RBP22.05■■□□□ 1.12
VRK3-219ENST00000600137 EPRSP07814 1512 aaKnown RBP22.05■■□□□ 1.12
VRK3-219ENST00000600137 HECW1Q76N89 1606 aa22.04■■□□□ 1.12
VRK3-219ENST00000600137 WDR7Q9Y4E6 1490 aa22.03■■□□□ 1.12
VRK3-219ENST00000600137 CDK13Q14004 1512 aaKnown RBP22.03■■□□□ 1.12
VRK3-219ENST00000600137 FAM69CQ0P6D2 419 aa22.03■■□□□ 1.12
VRK3-219ENST00000600137 FYCO1Q9BQS8 1478 aa22.01■■□□□ 1.11
VRK3-219ENST00000600137 ATP1B4Q9UN42 357 aaPredicted RBP22■■□□□ 1.11
VRK3-219ENST00000600137 GLI2P10070 1586 aa21.99■■□□□ 1.11
VRK3-219ENST00000600137 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.98■■□□□ 1.11
VRK3-219ENST00000600137 HNRNPUL2Q1KMD3 747 aaKnown RBP21.98■■□□□ 1.11
VRK3-219ENST00000600137 KCNH8Q96L42 1107 aa21.96■■□□□ 1.11
VRK3-219ENST00000600137 PLEKHD1A6NEE1 506 aa21.95■■□□□ 1.1
VRK3-219ENST00000600137 VPS8Q8N3P4 1428 aa21.95■■□□□ 1.1
VRK3-219ENST00000600137 CCDC18Q5T9S5 1454 aa21.9■■□□□ 1.1
VRK3-219ENST00000600137 MAP3K4Q9Y6R4 1608 aa21.9■■□□□ 1.1
VRK3-219ENST00000600137 MAGI3Q5TCQ9 1506 aa21.89■■□□□ 1.09
VRK3-219ENST00000600137 PPRC1Q5VV67 1664 aaKnown RBP21.88■■□□□ 1.09
VRK3-219ENST00000600137 CDK11AQ9UQ88 783 aaPredicted RBP21.86■■□□□ 1.09
VRK3-219ENST00000600137 ABCA9Q8IUA7 1624 aa21.86■■□□□ 1.09
VRK3-219ENST00000600137 TROQ12816 1431 aaPredicted RBP21.86■■□□□ 1.09
VRK3-219ENST00000600137 TSPOAP1O95153 1857 aa21.85■■□□□ 1.09
VRK3-219ENST00000600137 CFAP43Q8NDM7 1665 aa21.84■■□□□ 1.09
VRK3-219ENST00000600137 CD109Q6YHK3 1445 aa21.83■■□□□ 1.09
VRK3-219ENST00000600137 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.82■■□□□ 1.08
VRK3-219ENST00000600137 KIF14Q15058 1648 aa21.8■■□□□ 1.08
VRK3-219ENST00000600137 TTC37Q6PGP7 1564 aa21.78■■□□□ 1.08
VRK3-219ENST00000600137 TIAM1Q13009 1591 aa21.77■■□□□ 1.08
VRK3-219ENST00000600137 MAP3K1Q13233 1512 aa21.76■■□□□ 1.07
VRK3-219ENST00000600137 KANK4Q5T7N3 995 aaPredicted RBP21.72■■□□□ 1.07
VRK3-219ENST00000600137 COL17A1Q9UMD9 1497 aaPredicted RBP21.71■■□□□ 1.07
VRK3-219ENST00000600137 MTUS2Q5JR59 1369 aa21.71■■□□□ 1.07
VRK3-219ENST00000600137 PLCH2O75038 1416 aa21.7■■□□□ 1.06
VRK3-219ENST00000600137 TEX14Q8IWB6 1497 aa21.7■■□□□ 1.06
VRK3-219ENST00000600137 LRRC9Q6ZRR7 1453 aa21.69■■□□□ 1.06
VRK3-219ENST00000600137 EHBP1L1Q8N3D4 1523 aa21.68■■□□□ 1.06
VRK3-219ENST00000600137 ARAP3Q8WWN8 1544 aa21.65■■□□□ 1.06
VRK3-219ENST00000600137 NEO1Q92859 1461 aa21.64■■□□□ 1.06
VRK3-219ENST00000600137 MYO5CQ9NQX4 1742 aa21.64■■□□□ 1.06
VRK3-219ENST00000600137 CDC42BPBQ9Y5S2 1711 aa21.64■■□□□ 1.06
VRK3-219ENST00000600137 GPATCH8Q9UKJ3 1502 aaKnown RBP21.63■■□□□ 1.05
VRK3-219ENST00000600137 CDC42BPAQ5VT25 1732 aa21.63■■□□□ 1.05
VRK3-219ENST00000600137 PHLDB1Q86UU1 1377 aa21.61■■□□□ 1.05
VRK3-219ENST00000600137 FANCAO15360 1455 aa21.61■■□□□ 1.05
VRK3-219ENST00000600137 KDM6BO15054 1643 aa21.6■■□□□ 1.05
VRK3-219ENST00000600137 AKNAQ7Z591 1439 aa21.6■■□□□ 1.05
VRK3-219ENST00000600137 NCOA2Q15596 1464 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms