RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CTTNBP2Q8WZ74 1663 aa24.76■■□□□ 1.55
UPF1-206ENST00000598471 CEP162Q5TB80 1403 aa24.75■■□□□ 1.55
UPF1-206ENST00000598471 CHD1O14646 1710 aa24.72■■□□□ 1.55
UPF1-206ENST00000598471 CLIP1P30622 1438 aa24.68■■□□□ 1.54
UPF1-206ENST00000598471 NUP160Q12769 1436 aa24.68■■□□□ 1.54
UPF1-206ENST00000598471 KIAA0586Q9BVV6 1533 aa24.66■■□□□ 1.54
UPF1-206ENST00000598471 IQGAP2Q13576 1575 aa24.65■■□□□ 1.54
UPF1-206ENST00000598471 CEP170Q5SW79 1584 aa24.65■■□□□ 1.54
UPF1-206ENST00000598471 RANGAP1P46060 587 aaPredicted RBP24.61■■□□□ 1.53
UPF1-206ENST00000598471 EFCAB5A4FU69 1503 aa24.57■■□□□ 1.52
UPF1-206ENST00000598471 ARHGAP35Q9NRY4 1499 aa24.52■■□□□ 1.52
UPF1-206ENST00000598471 UGGT2Q9NYU1 1516 aa24.52■■□□□ 1.52
UPF1-206ENST00000598471 CLASP1Q7Z460 1538 aa24.5■■□□□ 1.51
UPF1-206ENST00000598471 SAMD9Q5K651 1589 aa24.48■■□□□ 1.51
UPF1-206ENST00000598471 ARAP1Q96P48 1450 aa24.45■■□□□ 1.5
UPF1-206ENST00000598471 JPH4Q96JJ6 628 aa24.43■■□□□ 1.5
UPF1-206ENST00000598471 ARHGEF11O15085 1522 aa24.41■■□□□ 1.5
UPF1-206ENST00000598471 CARMIL2Q6F5E8 1435 aa24.41■■□□□ 1.5
UPF1-206ENST00000598471 VPS8Q8N3P4 1428 aa24.41■■□□□ 1.5
UPF1-206ENST00000598471 RIMBP3CA6NJZ7 1639 aa24.39■■□□□ 1.49
UPF1-206ENST00000598471 RIMBP3BA6NNM3 1639 aa24.39■■□□□ 1.49
UPF1-206ENST00000598471 KIAA0556O60303 1618 aa24.39■■□□□ 1.49
UPF1-206ENST00000598471 RIMBP3Q9UFD9 1639 aa24.39■■□□□ 1.49
UPF1-206ENST00000598471 FHOD3Q2V2M9 1422 aa24.38■■□□□ 1.49
UPF1-206ENST00000598471 CYB5RLQ6IPT4 315 aa24.38■■□□□ 1.49
UPF1-206ENST00000598471 P3H3Q8IVL6 736 aa24.38■■□□□ 1.49
UPF1-206ENST00000598471 SHROOM2Q13796 1616 aa24.38■■□□□ 1.49
UPF1-206ENST00000598471 DISP1Q96F81 1524 aa24.37■■□□□ 1.49
UPF1-206ENST00000598471 FMN1Q68DA7 1419 aa24.34■■□□□ 1.49
UPF1-206ENST00000598471 PRG4Q92954 1404 aaPredicted RBP24.34■■□□□ 1.49
UPF1-206ENST00000598471 ERCC6L2Q5T890 1561 aa24.27■■□□□ 1.48
UPF1-206ENST00000598471 FYCO1Q9BQS8 1478 aa24.21■■□□□ 1.47
UPF1-206ENST00000598471 PCF11O94913 1555 aaKnown RBP24.2■■□□□ 1.47
UPF1-206ENST00000598471 CASKIN1Q8WXD9 1431 aa24.2■■□□□ 1.46
UPF1-206ENST00000598471 APLP2Q06481 763 aa24.2■■□□□ 1.46
UPF1-206ENST00000598471 PTPRGP23470 1445 aa24.16■■□□□ 1.46
UPF1-206ENST00000598471 TTBK1Q5TCY1 1321 aaPredicted RBP24.15■■□□□ 1.46
UPF1-206ENST00000598471 HECW1Q76N89 1606 aa24.13■■□□□ 1.45
UPF1-206ENST00000598471 ATP1B4Q9UN42 357 aaPredicted RBP24.12■■□□□ 1.45
UPF1-206ENST00000598471 RAPGEF6Q8TEU7 1601 aa24.1■■□□□ 1.45
UPF1-206ENST00000598471 MAP3K1Q13233 1512 aa24.08■■□□□ 1.45
UPF1-206ENST00000598471 CCDC18Q5T9S5 1454 aa24.06■■□□□ 1.44
UPF1-206ENST00000598471 PLB1Q6P1J6 1458 aa24.06■■□□□ 1.44
UPF1-206ENST00000598471 ABCA8O94911 1581 aa24.05■■□□□ 1.44
UPF1-206ENST00000598471 TIAM1Q13009 1591 aa24.03■■□□□ 1.44
UPF1-206ENST00000598471 CFAP43Q8NDM7 1665 aa24.03■■□□□ 1.44
UPF1-206ENST00000598471 UACAQ9BZF9 1416 aa24.01■■□□□ 1.43
UPF1-206ENST00000598471 NUP153P49790 1475 aaKnown RBP24■■□□□ 1.43
UPF1-206ENST00000598471 EPRSP07814 1512 aaKnown RBP24■■□□□ 1.43
UPF1-206ENST00000598471 ABCC2Q92887 1545 aa23.96■■□□□ 1.43
UPF1-206ENST00000598471 UHRF1BP1LA0JNW5 1464 aa23.94■■□□□ 1.42
UPF1-206ENST00000598471 LRRIQ1Q96JM4 1722 aa23.94■■□□□ 1.42
UPF1-206ENST00000598471 PPARGC1BQ86YN6 1023 aaKnown RBP23.92■■□□□ 1.42
UPF1-206ENST00000598471 CDK13Q14004 1512 aaKnown RBP23.92■■□□□ 1.42
UPF1-206ENST00000598471 LRRC9Q6ZRR7 1453 aa23.92■■□□□ 1.42
UPF1-206ENST00000598471 CDK11AQ9UQ88 783 aaPredicted RBP23.9■■□□□ 1.42
UPF1-206ENST00000598471 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.89■■□□□ 1.41
UPF1-206ENST00000598471 HNRNPUL2Q1KMD3 747 aaKnown RBP23.89■■□□□ 1.41
UPF1-206ENST00000598471 MTUS2Q5JR59 1369 aa23.89■■□□□ 1.41
UPF1-206ENST00000598471 ARID3CA6NKF2 412 aa23.88■■□□□ 1.41
UPF1-206ENST00000598471 KANK4Q5T7N3 995 aaPredicted RBP23.88■■□□□ 1.41
UPF1-206ENST00000598471 EHBP1L1Q8N3D4 1523 aa23.87■■□□□ 1.41
UPF1-206ENST00000598471 ATP10BO94823 1461 aa23.86■■□□□ 1.41
UPF1-206ENST00000598471 NPM1P06748 294 aaKnown RBP eCLIP23.84■■□□□ 1.41
UPF1-206ENST00000598471 ADCY10Q96PN6 1610 aa23.83■■□□□ 1.41
UPF1-206ENST00000598471 TRHP20396 242 aaPredicted RBP23.82■■□□□ 1.4
UPF1-206ENST00000598471 KDM5BQ9UGL1 1544 aa23.81■■□□□ 1.4
UPF1-206ENST00000598471 PLEKHD1A6NEE1 506 aa23.78■■□□□ 1.4
UPF1-206ENST00000598471 MAGI3Q5TCQ9 1506 aa23.78■■□□□ 1.4
UPF1-206ENST00000598471 ZCCHC11Q5TAX3 1644 aaKnown RBP23.77■■□□□ 1.4
UPF1-206ENST00000598471 TROQ12816 1431 aaPredicted RBP23.77■■□□□ 1.4
UPF1-206ENST00000598471 SUPT6HQ7KZ85 1726 aaKnown RBP23.76■■□□□ 1.39
UPF1-206ENST00000598471 TRIM26Q12899 539 aaPredicted RBP23.72■■□□□ 1.39
UPF1-206ENST00000598471 NCOA2Q15596 1464 aa23.7■■□□□ 1.38
UPF1-206ENST00000598471 KIF14Q15058 1648 aa23.68■■□□□ 1.38
UPF1-206ENST00000598471 PHLDB1Q86UU1 1377 aa23.64■■□□□ 1.37
UPF1-206ENST00000598471 WDR7Q9Y4E6 1490 aa23.62■■□□□ 1.37
UPF1-206ENST00000598471 FAM69CQ0P6D2 419 aa23.61■■□□□ 1.37
UPF1-206ENST00000598471 MYOM3Q5VTT5 1437 aa23.6■■□□□ 1.37
UPF1-206ENST00000598471 CCNB3Q8WWL7 1395 aa23.6■■□□□ 1.37
UPF1-206ENST00000598471 ASXL2Q76L83 1435 aa23.59■■□□□ 1.37
UPF1-206ENST00000598471 RRBP1Q9P2E9 1410 aaKnown RBP23.59■■□□□ 1.37
UPF1-206ENST00000598471 MAPKBP1O60336 1514 aa23.58■■□□□ 1.36
UPF1-206ENST00000598471 FGD6Q6ZV73 1430 aa23.55■■□□□ 1.36
UPF1-206ENST00000598471 ABCC10Q5T3U5 1492 aa23.55■■□□□ 1.36
UPF1-206ENST00000598471 ITSN2Q9NZM3 1697 aa23.54■■□□□ 1.36
UPF1-206ENST00000598471 KCNH8Q96L42 1107 aa23.54■■□□□ 1.36
UPF1-206ENST00000598471 MIA2Q96PC5 1412 aa23.53■■□□□ 1.36
UPF1-206ENST00000598471 PCGF6Q9BYE7 350 aa23.52■■□□□ 1.36
UPF1-206ENST00000598471 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.5■■□□□ 1.35
UPF1-206ENST00000598471 GPATCH8Q9UKJ3 1502 aaKnown RBP23.49■■□□□ 1.35
UPF1-206ENST00000598471 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.48■■□□□ 1.35
UPF1-206ENST00000598471 TTC37Q6PGP7 1564 aa23.48■■□□□ 1.35
UPF1-206ENST00000598471 PTPN23Q9H3S7 1636 aa23.46■■□□□ 1.35
UPF1-206ENST00000598471 FAM50AQ14320 339 aaKnown RBP23.45■■□□□ 1.34
UPF1-206ENST00000598471 CFDP1Q9UEE9 299 aaPredicted RBP23.45■■□□□ 1.34
UPF1-206ENST00000598471 CDC42BPAQ5VT25 1732 aa23.45■■□□□ 1.34
UPF1-206ENST00000598471 PREX2Q70Z35 1606 aa23.44■■□□□ 1.34
UPF1-206ENST00000598471 MYO5CQ9NQX4 1742 aa23.44■■□□□ 1.34
UPF1-206ENST00000598471 ABCA9Q8IUA7 1624 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms