RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 KIF21BO75037 1637 aa17.55■□□□□ 0.4
LIG1-210ENST00000596332 SHROOM2Q13796 1616 aa17.55■□□□□ 0.4
LIG1-210ENST00000596332 JPH4Q96JJ6 628 aa17.55■□□□□ 0.4
LIG1-210ENST00000596332 ERCC6L2Q5T890 1561 aa17.53■□□□□ 0.4
LIG1-210ENST00000596332 ARHGEF11O15085 1522 aa17.52■□□□□ 0.39
LIG1-210ENST00000596332 RIMBP3CA6NJZ7 1639 aa17.48■□□□□ 0.39
LIG1-210ENST00000596332 RIMBP3BA6NNM3 1639 aa17.48■□□□□ 0.39
LIG1-210ENST00000596332 RIMBP3Q9UFD9 1639 aa17.48■□□□□ 0.39
LIG1-210ENST00000596332 PRG4Q92954 1404 aaPredicted RBP17.47■□□□□ 0.39
LIG1-210ENST00000596332 IQGAP2Q13576 1575 aa17.46■□□□□ 0.39
LIG1-210ENST00000596332 GOLGA3Q08378 1498 aa17.44■□□□□ 0.38
LIG1-210ENST00000596332 UGGT2Q9NYU1 1516 aa17.44■□□□□ 0.38
LIG1-210ENST00000596332 EHMT2Q96KQ7 1210 aa17.44■□□□□ 0.38
LIG1-210ENST00000596332 DISP1Q96F81 1524 aa17.43■□□□□ 0.38
LIG1-210ENST00000596332 ARAP1Q96P48 1450 aa17.43■□□□□ 0.38
LIG1-210ENST00000596332 CTTNBP2Q8WZ74 1663 aa17.42■□□□□ 0.38
LIG1-210ENST00000596332 LOC105371045A0A1W2PR82 267 aa17.4■□□□□ 0.38
LIG1-210ENST00000596332 UBTFP17480 764 aaKnown RBP17.36■□□□□ 0.37
LIG1-210ENST00000596332 CYB5RLQ6IPT4 315 aa17.34■□□□□ 0.37
LIG1-210ENST00000596332 TNIKQ9UKE5 1360 aa17.34■□□□□ 0.37
LIG1-210ENST00000596332 KIAA0556O60303 1618 aa17.32■□□□□ 0.36
LIG1-210ENST00000596332 SAMD9Q5K651 1589 aa17.31■□□□□ 0.36
LIG1-210ENST00000596332 CARMIL2Q6F5E8 1435 aa17.3■□□□□ 0.36
LIG1-210ENST00000596332 P3H3Q8IVL6 736 aa17.27■□□□□ 0.36
LIG1-210ENST00000596332 PTPRGP23470 1445 aa17.27■□□□□ 0.35
LIG1-210ENST00000596332 ARHGAP35Q9NRY4 1499 aa17.26■□□□□ 0.35
LIG1-210ENST00000596332 RANGAP1P46060 587 aaPredicted RBP17.25■□□□□ 0.35
LIG1-210ENST00000596332 FHOD3Q2V2M9 1422 aa17.21■□□□□ 0.35
LIG1-210ENST00000596332 EFCAB5A4FU69 1503 aa17.2■□□□□ 0.34
LIG1-210ENST00000596332 TTBK1Q5TCY1 1321 aaPredicted RBP17.19■□□□□ 0.34
LIG1-210ENST00000596332 PLB1Q6P1J6 1458 aa17.18■□□□□ 0.34
LIG1-210ENST00000596332 ADCY10Q96PN6 1610 aa17.18■□□□□ 0.34
LIG1-210ENST00000596332 ABCA8O94911 1581 aa17.17■□□□□ 0.34
LIG1-210ENST00000596332 UACAQ9BZF9 1416 aa17.17■□□□□ 0.34
LIG1-210ENST00000596332 UHRF1BP1LA0JNW5 1464 aa17.17■□□□□ 0.34
LIG1-210ENST00000596332 CLIP1P30622 1438 aa17.16■□□□□ 0.34
LIG1-210ENST00000596332 CEP162Q5TB80 1403 aa17.15■□□□□ 0.34
LIG1-210ENST00000596332 ABCC2Q92887 1545 aa17.12■□□□□ 0.33
LIG1-210ENST00000596332 KDM5BQ9UGL1 1544 aa17.1■□□□□ 0.33
LIG1-210ENST00000596332 NUP153P49790 1475 aaKnown RBP17.06■□□□□ 0.32
LIG1-210ENST00000596332 ATP10BO94823 1461 aa17.05■□□□□ 0.32
LIG1-210ENST00000596332 FMN1Q68DA7 1419 aa17.04■□□□□ 0.32
LIG1-210ENST00000596332 RAPGEF6Q8TEU7 1601 aa17.04■□□□□ 0.32
LIG1-210ENST00000596332 CASKIN1Q8WXD9 1431 aa17■□□□□ 0.31
LIG1-210ENST00000596332 MAPKBP1O60336 1514 aa17■□□□□ 0.31
LIG1-210ENST00000596332 ZCCHC11Q5TAX3 1644 aaKnown RBP16.99■□□□□ 0.31
LIG1-210ENST00000596332 ARID3CA6NKF2 412 aa16.99■□□□□ 0.31
LIG1-210ENST00000596332 NPM1P06748 294 aaKnown RBP eCLIP16.97■□□□□ 0.31
LIG1-210ENST00000596332 PCF11O94913 1555 aaKnown RBP16.97■□□□□ 0.31
LIG1-210ENST00000596332 ASXL2Q76L83 1435 aa16.96■□□□□ 0.31
LIG1-210ENST00000596332 LRRIQ1Q96JM4 1722 aa16.96■□□□□ 0.31
LIG1-210ENST00000596332 EPRSP07814 1512 aaKnown RBP16.95■□□□□ 0.3
LIG1-210ENST00000596332 CDK13Q14004 1512 aaKnown RBP16.94■□□□□ 0.3
LIG1-210ENST00000596332 VPS8Q8N3P4 1428 aa16.93■□□□□ 0.3
LIG1-210ENST00000596332 ABCC10Q5T3U5 1492 aa16.92■□□□□ 0.3
LIG1-210ENST00000596332 FYCO1Q9BQS8 1478 aa16.92■□□□□ 0.3
LIG1-210ENST00000596332 HECW1Q76N89 1606 aa16.91■□□□□ 0.3
LIG1-210ENST00000596332 WDR7Q9Y4E6 1490 aa16.89■□□□□ 0.29
LIG1-210ENST00000596332 ATP1B4Q9UN42 357 aaPredicted RBP16.88■□□□□ 0.29
LIG1-210ENST00000596332 MAGI3Q5TCQ9 1506 aa16.87■□□□□ 0.29
LIG1-210ENST00000596332 DIP2BQ9P265 1576 aa16.87■□□□□ 0.29
LIG1-210ENST00000596332 KIF13AQ9H1H9 1805 aa16.85■□□□□ 0.29
LIG1-210ENST00000596332 FAM69CQ0P6D2 419 aa16.85■□□□□ 0.29
LIG1-210ENST00000596332 GLI2P10070 1586 aa16.84■□□□□ 0.29
LIG1-210ENST00000596332 PLEKHD1A6NEE1 506 aa16.83■□□□□ 0.28
LIG1-210ENST00000596332 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.83■□□□□ 0.28
LIG1-210ENST00000596332 HNRNPUL2Q1KMD3 747 aaKnown RBP16.83■□□□□ 0.28
LIG1-210ENST00000596332 KCNH8Q96L42 1107 aa16.83■□□□□ 0.28
LIG1-210ENST00000596332 CCDC18Q5T9S5 1454 aa16.82■□□□□ 0.28
LIG1-210ENST00000596332 TRHP20396 242 aaPredicted RBP16.82■□□□□ 0.28
LIG1-210ENST00000596332 TROQ12816 1431 aaPredicted RBP16.79■□□□□ 0.28
LIG1-210ENST00000596332 KANK4Q5T7N3 995 aaPredicted RBP16.78■□□□□ 0.28
LIG1-210ENST00000596332 MAP3K1Q13233 1512 aa16.77■□□□□ 0.28
LIG1-210ENST00000596332 TIAM1Q13009 1591 aa16.77■□□□□ 0.27
LIG1-210ENST00000596332 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.76■□□□□ 0.27
LIG1-210ENST00000596332 MAP3K4Q9Y6R4 1608 aa16.76■□□□□ 0.27
LIG1-210ENST00000596332 ABCA9Q8IUA7 1624 aa16.75■□□□□ 0.27
LIG1-210ENST00000596332 CDK11AQ9UQ88 783 aaPredicted RBP16.75■□□□□ 0.27
LIG1-210ENST00000596332 PPRC1Q5VV67 1664 aaKnown RBP16.75■□□□□ 0.27
LIG1-210ENST00000596332 KIF14Q15058 1648 aa16.74■□□□□ 0.27
LIG1-210ENST00000596332 CFAP43Q8NDM7 1665 aa16.73■□□□□ 0.27
LIG1-210ENST00000596332 CD109Q6YHK3 1445 aa16.72■□□□□ 0.27
LIG1-210ENST00000596332 LRRC9Q6ZRR7 1453 aa16.72■□□□□ 0.27
LIG1-210ENST00000596332 TTC37Q6PGP7 1564 aa16.72■□□□□ 0.27
LIG1-210ENST00000596332 MTUS2Q5JR59 1369 aa16.67■□□□□ 0.26
LIG1-210ENST00000596332 PLCH2O75038 1416 aa16.67■□□□□ 0.26
LIG1-210ENST00000596332 COL17A1Q9UMD9 1497 aaPredicted RBP16.67■□□□□ 0.26
LIG1-210ENST00000596332 EHBP1L1Q8N3D4 1523 aa16.65■□□□□ 0.26
LIG1-210ENST00000596332 GPATCH8Q9UKJ3 1502 aaKnown RBP16.65■□□□□ 0.26
LIG1-210ENST00000596332 TSPOAP1O95153 1857 aa16.63■□□□□ 0.25
LIG1-210ENST00000596332 NCOA2Q15596 1464 aa16.63■□□□□ 0.25
LIG1-210ENST00000596332 ARAP3Q8WWN8 1544 aa16.6■□□□□ 0.25
LIG1-210ENST00000596332 CDC42BPBQ9Y5S2 1711 aa16.59■□□□□ 0.25
LIG1-210ENST00000596332 CDC42BPAQ5VT25 1732 aa16.58■□□□□ 0.24
LIG1-210ENST00000596332 FANCAO15360 1455 aa16.57■□□□□ 0.24
LIG1-210ENST00000596332 TEX14Q8IWB6 1497 aa16.57■□□□□ 0.24
LIG1-210ENST00000596332 NEO1Q92859 1461 aa16.57■□□□□ 0.24
LIG1-210ENST00000596332 PHLDB1Q86UU1 1377 aa16.57■□□□□ 0.24
LIG1-210ENST00000596332 APLP2Q06481 763 aa16.57■□□□□ 0.24
LIG1-210ENST00000596332 PREX2Q70Z35 1606 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms