RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 KIAA0586Q9BVV6 1533 aa28.89■■■□□ 2.22
SHKBP1-212ENST00000596163 ARAP1Q96P48 1450 aa28.89■■■□□ 2.22
SHKBP1-212ENST00000596163 EEA1Q15075 1411 aa28.86■■■□□ 2.21
SHKBP1-212ENST00000596163 CSRNP3Q8WYN3 585 aa28.86■■■□□ 2.21
SHKBP1-212ENST00000596163 SHROOM2Q13796 1616 aa28.83■■■□□ 2.21
SHKBP1-212ENST00000596163 PRG4Q92954 1404 aaPredicted RBP28.82■■■□□ 2.2
SHKBP1-212ENST00000596163 PRXQ9BXM0 1461 aa28.78■■■□□ 2.2
SHKBP1-212ENST00000596163 ERCC6L2Q5T890 1561 aa28.72■■■□□ 2.19
SHKBP1-212ENST00000596163 FAM9AQ8IZU1 332 aaPredicted RBP28.72■■■□□ 2.19
SHKBP1-212ENST00000596163 IQGAP2Q13576 1575 aa28.67■■■□□ 2.18
SHKBP1-212ENST00000596163 CARMIL2Q6F5E8 1435 aa28.65■■■□□ 2.18
SHKBP1-212ENST00000596163 UGGT2Q9NYU1 1516 aa28.53■■■□□ 2.16
SHKBP1-212ENST00000596163 TNIKQ9UKE5 1360 aa28.53■■■□□ 2.16
SHKBP1-212ENST00000596163 PTPRGP23470 1445 aa28.52■■■□□ 2.16
SHKBP1-212ENST00000596163 CTTNBP2Q8WZ74 1663 aa28.48■■■□□ 2.15
SHKBP1-212ENST00000596163 GOLGA3Q08378 1498 aa28.46■■■□□ 2.15
SHKBP1-212ENST00000596163 DISP1Q96F81 1524 aa28.46■■■□□ 2.15
SHKBP1-212ENST00000596163 TTBK1Q5TCY1 1321 aaPredicted RBP28.45■■■□□ 2.15
SHKBP1-212ENST00000596163 NPM1P06748 294 aaKnown RBP eCLIP28.45■■■□□ 2.14
SHKBP1-212ENST00000596163 KIF21BO75037 1637 aa28.44■■■□□ 2.14
SHKBP1-212ENST00000596163 TRHP20396 242 aaPredicted RBP28.43■■■□□ 2.14
SHKBP1-212ENST00000596163 KIAA0556O60303 1618 aa28.37■■■□□ 2.13
SHKBP1-212ENST00000596163 UBTFP17480 764 aaKnown RBP28.37■■■□□ 2.13
SHKBP1-212ENST00000596163 EHMT2Q96KQ7 1210 aa28.31■■■□□ 2.12
SHKBP1-212ENST00000596163 UACAQ9BZF9 1416 aa28.3■■■□□ 2.12
SHKBP1-212ENST00000596163 ADCY10Q96PN6 1610 aa28.26■■■□□ 2.11
SHKBP1-212ENST00000596163 RANGAP1P46060 587 aaPredicted RBP28.26■■■□□ 2.11
SHKBP1-212ENST00000596163 P3H3Q8IVL6 736 aa28.26■■■□□ 2.11
SHKBP1-212ENST00000596163 UHRF1BP1LA0JNW5 1464 aa28.26■■■□□ 2.11
SHKBP1-212ENST00000596163 ABCC2Q92887 1545 aa28.2■■■□□ 2.1
SHKBP1-212ENST00000596163 SAMD9Q5K651 1589 aa28.17■■■□□ 2.1
SHKBP1-212ENST00000596163 MAPKBP1O60336 1514 aa28.16■■■□□ 2.1
SHKBP1-212ENST00000596163 PLB1Q6P1J6 1458 aa28.12■■■□□ 2.09
SHKBP1-212ENST00000596163 EFCAB5A4FU69 1503 aa28.12■■■□□ 2.09
SHKBP1-212ENST00000596163 KDM5BQ9UGL1 1544 aa28.09■■■□□ 2.09
SHKBP1-212ENST00000596163 FAM69CQ0P6D2 419 aa28.08■■■□□ 2.09
SHKBP1-212ENST00000596163 ABCA8O94911 1581 aa28.07■■■□□ 2.08
SHKBP1-212ENST00000596163 FHOD3Q2V2M9 1422 aa28.06■■■□□ 2.08
SHKBP1-212ENST00000596163 ABCC10Q5T3U5 1492 aa28.06■■■□□ 2.08
SHKBP1-212ENST00000596163 ASXL2Q76L83 1435 aa28.03■■■□□ 2.08
SHKBP1-212ENST00000596163 ZCCHC11Q5TAX3 1644 aaKnown RBP27.96■■■□□ 2.07
SHKBP1-212ENST00000596163 ARHGAP35Q9NRY4 1499 aa27.95■■■□□ 2.07
SHKBP1-212ENST00000596163 DIP2BQ9P265 1576 aa27.93■■■□□ 2.06
SHKBP1-212ENST00000596163 FMN1Q68DA7 1419 aa27.92■■■□□ 2.06
SHKBP1-212ENST00000596163 RAPGEF6Q8TEU7 1601 aa27.92■■■□□ 2.06
SHKBP1-212ENST00000596163 ARID3CA6NKF2 412 aa27.91■■■□□ 2.06
SHKBP1-212ENST00000596163 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.91■■■□□ 2.06
SHKBP1-212ENST00000596163 HNRNPUL2Q1KMD3 747 aaKnown RBP27.91■■■□□ 2.06
SHKBP1-212ENST00000596163 ATP10BO94823 1461 aa27.89■■■□□ 2.06
SHKBP1-212ENST00000596163 WDR7Q9Y4E6 1490 aa27.89■■■□□ 2.05
SHKBP1-212ENST00000596163 KIF13AQ9H1H9 1805 aa27.88■■■□□ 2.05
SHKBP1-212ENST00000596163 CLIP1P30622 1438 aa27.85■■■□□ 2.05
SHKBP1-212ENST00000596163 EPRSP07814 1512 aaKnown RBP27.85■■■□□ 2.05
SHKBP1-212ENST00000596163 NUP153P49790 1475 aaKnown RBP27.84■■■□□ 2.05
SHKBP1-212ENST00000596163 KCNH8Q96L42 1107 aa27.84■■■□□ 2.05
SHKBP1-212ENST00000596163 GLI2P10070 1586 aa27.84■■■□□ 2.05
SHKBP1-212ENST00000596163 ATP1B4Q9UN42 357 aaPredicted RBP27.83■■■□□ 2.05
SHKBP1-212ENST00000596163 PLEKHD1A6NEE1 506 aa27.79■■■□□ 2.04
SHKBP1-212ENST00000596163 LOC105371045A0A1W2PR82 267 aa27.78■■■□□ 2.04
SHKBP1-212ENST00000596163 CDK11AQ9UQ88 783 aaPredicted RBP27.71■■■□□ 2.03
SHKBP1-212ENST00000596163 HECW1Q76N89 1606 aa27.7■■■□□ 2.03
SHKBP1-212ENST00000596163 CEP162Q5TB80 1403 aa27.69■■■□□ 2.02
SHKBP1-212ENST00000596163 CD109Q6YHK3 1445 aa27.67■■■□□ 2.02
SHKBP1-212ENST00000596163 CASKIN1Q8WXD9 1431 aa27.67■■■□□ 2.02
SHKBP1-212ENST00000596163 TEX14Q8IWB6 1497 aa27.65■■■□□ 2.02
SHKBP1-212ENST00000596163 MAP3K4Q9Y6R4 1608 aa27.64■■■□□ 2.02
SHKBP1-212ENST00000596163 TSPOAP1O95153 1857 aa27.64■■■□□ 2.01
SHKBP1-212ENST00000596163 CDK13Q14004 1512 aaKnown RBP27.62■■■□□ 2.01
SHKBP1-212ENST00000596163 CFAP43Q8NDM7 1665 aa27.59■■■□□ 2.01
SHKBP1-212ENST00000596163 MAGI3Q5TCQ9 1506 aa27.59■■■□□ 2.01
SHKBP1-212ENST00000596163 FYCO1Q9BQS8 1478 aa27.57■■■□□ 2
SHKBP1-212ENST00000596163 CCDC18Q5T9S5 1454 aa27.57■■■□□ 2
SHKBP1-212ENST00000596163 PCF11O94913 1555 aaKnown RBP27.55■■■□□ 2
SHKBP1-212ENST00000596163 PPRC1Q5VV67 1664 aaKnown RBP27.53■■■□□ 2
SHKBP1-212ENST00000596163 ABCA9Q8IUA7 1624 aa27.53■■■□□ 2
SHKBP1-212ENST00000596163 KDM6BO15054 1643 aa27.52■■■□□ 2
SHKBP1-212ENST00000596163 PHLDB1Q86UU1 1377 aa27.49■■□□□ 1.99
SHKBP1-212ENST00000596163 TROQ12816 1431 aaPredicted RBP27.49■■□□□ 1.99
SHKBP1-212ENST00000596163 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.43■■□□□ 1.98
SHKBP1-212ENST00000596163 NEO1Q92859 1461 aa27.4■■□□□ 1.98
SHKBP1-212ENST00000596163 LRRIQ1Q96JM4 1722 aa27.38■■□□□ 1.97
SHKBP1-212ENST00000596163 VPS8Q8N3P4 1428 aa27.38■■□□□ 1.97
SHKBP1-212ENST00000596163 COL17A1Q9UMD9 1497 aaPredicted RBP27.38■■□□□ 1.97
SHKBP1-212ENST00000596163 KIF14Q15058 1648 aa27.37■■□□□ 1.97
SHKBP1-212ENST00000596163 PLCH2O75038 1416 aa27.35■■□□□ 1.97
SHKBP1-212ENST00000596163 ARAP3Q8WWN8 1544 aa27.34■■□□□ 1.97
SHKBP1-212ENST00000596163 TTC37Q6PGP7 1564 aa27.34■■□□□ 1.97
SHKBP1-212ENST00000596163 EFCAB2Q5VUJ9 269 aa27.33■■□□□ 1.97
SHKBP1-212ENST00000596163 MTUS2Q5JR59 1369 aa27.33■■□□□ 1.97
SHKBP1-212ENST00000596163 FANCAO15360 1455 aa27.32■■□□□ 1.96
SHKBP1-212ENST00000596163 AKNAQ7Z591 1439 aa27.3■■□□□ 1.96
SHKBP1-212ENST00000596163 CFAP74Q9C0B2 1584 aa27.27■■□□□ 1.96
SHKBP1-212ENST00000596163 RAPGEF3O95398 923 aa27.23■■□□□ 1.95
SHKBP1-212ENST00000596163 APLP2Q06481 763 aa27.23■■□□□ 1.95
SHKBP1-212ENST00000596163 DENND4BO75064 1496 aaPredicted RBP27.22■■□□□ 1.95
SHKBP1-212ENST00000596163 MYO5CQ9NQX4 1742 aa27.21■■□□□ 1.95
SHKBP1-212ENST00000596163 ARHGAP5Q13017 1502 aa27.2■■□□□ 1.94
SHKBP1-212ENST00000596163 EHBP1L1Q8N3D4 1523 aa27.19■■□□□ 1.94
SHKBP1-212ENST00000596163 AEBP2Q6ZN18 517 aaPredicted RBP27.18■■□□□ 1.94
SHKBP1-212ENST00000596163 ADGRL1O94910 1474 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms