RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 KIAA0586Q9BVV6 1533 aa25.12■■□□□ 1.61
UPF1-202ENST00000594243 CSRNP3Q8WYN3 585 aa25.11■■□□□ 1.61
UPF1-202ENST00000594243 EEA1Q15075 1411 aa25.11■■□□□ 1.61
UPF1-202ENST00000594243 SHROOM2Q13796 1616 aa25.1■■□□□ 1.61
UPF1-202ENST00000594243 ARAP1Q96P48 1450 aa25.09■■□□□ 1.61
UPF1-202ENST00000594243 PRG4Q92954 1404 aaPredicted RBP25.04■■□□□ 1.6
UPF1-202ENST00000594243 PRXQ9BXM0 1461 aa25.04■■□□□ 1.6
UPF1-202ENST00000594243 FAM9AQ8IZU1 332 aaPredicted RBP25■■□□□ 1.59
UPF1-202ENST00000594243 ERCC6L2Q5T890 1561 aa25■■□□□ 1.59
UPF1-202ENST00000594243 IQGAP2Q13576 1575 aa24.95■■□□□ 1.58
UPF1-202ENST00000594243 CARMIL2Q6F5E8 1435 aa24.89■■□□□ 1.58
UPF1-202ENST00000594243 CTTNBP2Q8WZ74 1663 aa24.84■■□□□ 1.57
UPF1-202ENST00000594243 UGGT2Q9NYU1 1516 aa24.82■■□□□ 1.56
UPF1-202ENST00000594243 TNIKQ9UKE5 1360 aa24.79■■□□□ 1.56
UPF1-202ENST00000594243 KIF21BO75037 1637 aa24.78■■□□□ 1.56
UPF1-202ENST00000594243 PTPRGP23470 1445 aa24.78■■□□□ 1.56
UPF1-202ENST00000594243 DISP1Q96F81 1524 aa24.76■■□□□ 1.55
UPF1-202ENST00000594243 TRHP20396 242 aaPredicted RBP24.76■■□□□ 1.55
UPF1-202ENST00000594243 GOLGA3Q08378 1498 aa24.73■■□□□ 1.55
UPF1-202ENST00000594243 TTBK1Q5TCY1 1321 aaPredicted RBP24.72■■□□□ 1.55
UPF1-202ENST00000594243 KIAA0556O60303 1618 aa24.7■■□□□ 1.54
UPF1-202ENST00000594243 NPM1P06748 294 aaKnown RBP eCLIP24.69■■□□□ 1.54
UPF1-202ENST00000594243 UBTFP17480 764 aaKnown RBP24.68■■□□□ 1.54
UPF1-202ENST00000594243 EHMT2Q96KQ7 1210 aa24.65■■□□□ 1.54
UPF1-202ENST00000594243 ADCY10Q96PN6 1610 aa24.6■■□□□ 1.53
UPF1-202ENST00000594243 UACAQ9BZF9 1416 aa24.6■■□□□ 1.53
UPF1-202ENST00000594243 RANGAP1P46060 587 aaPredicted RBP24.59■■□□□ 1.53
UPF1-202ENST00000594243 P3H3Q8IVL6 736 aa24.58■■□□□ 1.53
UPF1-202ENST00000594243 UHRF1BP1LA0JNW5 1464 aa24.56■■□□□ 1.52
UPF1-202ENST00000594243 SAMD9Q5K651 1589 aa24.54■■□□□ 1.52
UPF1-202ENST00000594243 ABCC2Q92887 1545 aa24.51■■□□□ 1.51
UPF1-202ENST00000594243 EFCAB5A4FU69 1503 aa24.47■■□□□ 1.51
UPF1-202ENST00000594243 MAPKBP1O60336 1514 aa24.47■■□□□ 1.51
UPF1-202ENST00000594243 PLB1Q6P1J6 1458 aa24.47■■□□□ 1.51
UPF1-202ENST00000594243 ABCA8O94911 1581 aa24.43■■□□□ 1.5
UPF1-202ENST00000594243 KDM5BQ9UGL1 1544 aa24.43■■□□□ 1.5
UPF1-202ENST00000594243 FHOD3Q2V2M9 1422 aa24.42■■□□□ 1.5
UPF1-202ENST00000594243 ABCC10Q5T3U5 1492 aa24.38■■□□□ 1.49
UPF1-202ENST00000594243 FAM69CQ0P6D2 419 aa24.37■■□□□ 1.49
UPF1-202ENST00000594243 KIF13AQ9H1H9 1805 aa24.37■■□□□ 1.49
UPF1-202ENST00000594243 ASXL2Q76L83 1435 aa24.35■■□□□ 1.49
UPF1-202ENST00000594243 ZCCHC11Q5TAX3 1644 aaKnown RBP24.35■■□□□ 1.49
UPF1-202ENST00000594243 ARHGAP35Q9NRY4 1499 aa24.34■■□□□ 1.49
UPF1-202ENST00000594243 RAPGEF6Q8TEU7 1601 aa24.32■■□□□ 1.48
UPF1-202ENST00000594243 DIP2BQ9P265 1576 aa24.29■■□□□ 1.48
UPF1-202ENST00000594243 FMN1Q68DA7 1419 aa24.28■■□□□ 1.48
UPF1-202ENST00000594243 ATP10BO94823 1461 aa24.26■■□□□ 1.47
UPF1-202ENST00000594243 ARID3CA6NKF2 412 aa24.26■■□□□ 1.47
UPF1-202ENST00000594243 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.25■■□□□ 1.47
UPF1-202ENST00000594243 HNRNPUL2Q1KMD3 747 aaKnown RBP24.25■■□□□ 1.47
UPF1-202ENST00000594243 WDR7Q9Y4E6 1490 aa24.24■■□□□ 1.47
UPF1-202ENST00000594243 CLIP1P30622 1438 aa24.23■■□□□ 1.47
UPF1-202ENST00000594243 NUP153P49790 1475 aaKnown RBP24.22■■□□□ 1.47
UPF1-202ENST00000594243 LOC105371045A0A1W2PR82 267 aa24.21■■□□□ 1.47
UPF1-202ENST00000594243 GLI2P10070 1586 aa24.2■■□□□ 1.47
UPF1-202ENST00000594243 EPRSP07814 1512 aaKnown RBP24.2■■□□□ 1.47
UPF1-202ENST00000594243 ATP1B4Q9UN42 357 aaPredicted RBP24.19■■□□□ 1.46
UPF1-202ENST00000594243 KCNH8Q96L42 1107 aa24.18■■□□□ 1.46
UPF1-202ENST00000594243 PLEKHD1A6NEE1 506 aa24.15■■□□□ 1.46
UPF1-202ENST00000594243 TSPOAP1O95153 1857 aa24.12■■□□□ 1.45
UPF1-202ENST00000594243 HECW1Q76N89 1606 aa24.12■■□□□ 1.45
UPF1-202ENST00000594243 CEP162Q5TB80 1403 aa24.1■■□□□ 1.45
UPF1-202ENST00000594243 CDK11AQ9UQ88 783 aaPredicted RBP24.07■■□□□ 1.44
UPF1-202ENST00000594243 CASKIN1Q8WXD9 1431 aa24.07■■□□□ 1.44
UPF1-202ENST00000594243 MAP3K4Q9Y6R4 1608 aa24.06■■□□□ 1.44
UPF1-202ENST00000594243 CD109Q6YHK3 1445 aa24.04■■□□□ 1.44
UPF1-202ENST00000594243 CDK13Q14004 1512 aaKnown RBP24.04■■□□□ 1.44
UPF1-202ENST00000594243 CFAP43Q8NDM7 1665 aa24.02■■□□□ 1.44
UPF1-202ENST00000594243 TEX14Q8IWB6 1497 aa24.01■■□□□ 1.43
UPF1-202ENST00000594243 FYCO1Q9BQS8 1478 aa24■■□□□ 1.43
UPF1-202ENST00000594243 PCF11O94913 1555 aaKnown RBP23.99■■□□□ 1.43
UPF1-202ENST00000594243 CCDC18Q5T9S5 1454 aa23.98■■□□□ 1.43
UPF1-202ENST00000594243 PPRC1Q5VV67 1664 aaKnown RBP23.98■■□□□ 1.43
UPF1-202ENST00000594243 MAGI3Q5TCQ9 1506 aa23.97■■□□□ 1.43
UPF1-202ENST00000594243 ABCA9Q8IUA7 1624 aa23.96■■□□□ 1.43
UPF1-202ENST00000594243 KDM6BO15054 1643 aa23.92■■□□□ 1.42
UPF1-202ENST00000594243 LRRIQ1Q96JM4 1722 aa23.92■■□□□ 1.42
UPF1-202ENST00000594243 TROQ12816 1431 aaPredicted RBP23.9■■□□□ 1.42
UPF1-202ENST00000594243 AEBP2Q6ZN18 517 aaPredicted RBP23.88■■□□□ 1.41
UPF1-202ENST00000594243 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.88■■□□□ 1.41
UPF1-202ENST00000594243 PHLDB1Q86UU1 1377 aa23.86■■□□□ 1.41
UPF1-202ENST00000594243 VPS8Q8N3P4 1428 aa23.84■■□□□ 1.41
UPF1-202ENST00000594243 KIF14Q15058 1648 aa23.81■■□□□ 1.4
UPF1-202ENST00000594243 NEO1Q92859 1461 aa23.81■■□□□ 1.4
UPF1-202ENST00000594243 COL17A1Q9UMD9 1497 aaPredicted RBP23.81■■□□□ 1.4
UPF1-202ENST00000594243 TTC37Q6PGP7 1564 aa23.8■■□□□ 1.4
UPF1-202ENST00000594243 PLCH2O75038 1416 aa23.79■■□□□ 1.4
UPF1-202ENST00000594243 ARAP3Q8WWN8 1544 aa23.77■■□□□ 1.4
UPF1-202ENST00000594243 MTUS2Q5JR59 1369 aa23.76■■□□□ 1.39
UPF1-202ENST00000594243 FANCAO15360 1455 aa23.75■■□□□ 1.39
UPF1-202ENST00000594243 EFCAB2Q5VUJ9 269 aa23.74■■□□□ 1.39
UPF1-202ENST00000594243 CFAP74Q9C0B2 1584 aa23.73■■□□□ 1.39
UPF1-202ENST00000594243 AKNAQ7Z591 1439 aa23.72■■□□□ 1.39
UPF1-202ENST00000594243 MYO5CQ9NQX4 1742 aa23.7■■□□□ 1.39
UPF1-202ENST00000594243 APLP2Q06481 763 aa23.67■■□□□ 1.38
UPF1-202ENST00000594243 EHBP1L1Q8N3D4 1523 aa23.66■■□□□ 1.38
UPF1-202ENST00000594243 RAPGEF3O95398 923 aa23.66■■□□□ 1.38
UPF1-202ENST00000594243 TIAM1Q13009 1591 aa23.65■■□□□ 1.38
UPF1-202ENST00000594243 ARHGAP5Q13017 1502 aa23.65■■□□□ 1.38
UPF1-202ENST00000594243 MAP3K1Q13233 1512 aa23.64■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms