RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 ARHGAP35Q9NRY4 1499 aa20.89■□□□□ 0.93
VRK3-205ENST00000593919 CHMP7Q8WUX9 453 aaPredicted RBP20.87■□□□□ 0.93
VRK3-205ENST00000593919 ARAP1Q96P48 1450 aa20.86■□□□□ 0.93
VRK3-205ENST00000593919 FBLN2P98095 1184 aa20.84■□□□□ 0.93
VRK3-205ENST00000593919 IQGAP2Q13576 1575 aa20.84■□□□□ 0.93
VRK3-205ENST00000593919 CHD1O14646 1710 aa20.83■□□□□ 0.92
VRK3-205ENST00000593919 CEP170Q5SW79 1584 aa20.83■□□□□ 0.92
VRK3-205ENST00000593919 VPS8Q8N3P4 1428 aa20.82■□□□□ 0.92
VRK3-205ENST00000593919 EFCAB5A4FU69 1503 aa20.81■□□□□ 0.92
VRK3-205ENST00000593919 KIAA0586Q9BVV6 1533 aa20.79■□□□□ 0.92
VRK3-205ENST00000593919 SAMD9Q5K651 1589 aa20.78■□□□□ 0.92
VRK3-205ENST00000593919 NUP160Q12769 1436 aa20.78■□□□□ 0.92
VRK3-205ENST00000593919 FHOD3Q2V2M9 1422 aa20.72■□□□□ 0.91
VRK3-205ENST00000593919 P3H3Q8IVL6 736 aa20.72■□□□□ 0.91
VRK3-205ENST00000593919 PCGF6Q9BYE7 350 aa20.72■□□□□ 0.91
VRK3-205ENST00000593919 UGGT2Q9NYU1 1516 aa20.72■□□□□ 0.91
VRK3-205ENST00000593919 KIAA0556O60303 1618 aa20.64■□□□□ 0.89
VRK3-205ENST00000593919 PPARGC1BQ86YN6 1023 aaKnown RBP20.63■□□□□ 0.89
VRK3-205ENST00000593919 DISP1Q96F81 1524 aa20.63■□□□□ 0.89
VRK3-205ENST00000593919 PCF11O94913 1555 aaKnown RBP20.62■□□□□ 0.89
VRK3-205ENST00000593919 FMN1Q68DA7 1419 aa20.6■□□□□ 0.89
VRK3-205ENST00000593919 JPH4Q96JJ6 628 aa20.59■□□□□ 0.89
VRK3-205ENST00000593919 APLP2Q06481 763 aa20.56■□□□□ 0.88
VRK3-205ENST00000593919 FYCO1Q9BQS8 1478 aa20.55■□□□□ 0.88
VRK3-205ENST00000593919 SHROOM2Q13796 1616 aa20.54■□□□□ 0.88
VRK3-205ENST00000593919 CLASP1Q7Z460 1538 aa20.54■□□□□ 0.88
VRK3-205ENST00000593919 CASKIN1Q8WXD9 1431 aa20.54■□□□□ 0.88
VRK3-205ENST00000593919 TTBK1Q5TCY1 1321 aaPredicted RBP20.52■□□□□ 0.88
VRK3-205ENST00000593919 CARMIL2Q6F5E8 1435 aa20.52■□□□□ 0.87
VRK3-205ENST00000593919 TIAM1Q13009 1591 aa20.49■□□□□ 0.87
VRK3-205ENST00000593919 LRRIQ1Q96JM4 1722 aa20.49■□□□□ 0.87
VRK3-205ENST00000593919 PRG4Q92954 1404 aaPredicted RBP20.49■□□□□ 0.87
VRK3-205ENST00000593919 CFAP43Q8NDM7 1665 aa20.49■□□□□ 0.87
VRK3-205ENST00000593919 MAP3K1Q13233 1512 aa20.48■□□□□ 0.87
VRK3-205ENST00000593919 TRIM26Q12899 539 aaPredicted RBP20.48■□□□□ 0.87
VRK3-205ENST00000593919 HRCP23327 699 aa20.47■□□□□ 0.87
VRK3-205ENST00000593919 ATP1B4Q9UN42 357 aaPredicted RBP20.47■□□□□ 0.87
VRK3-205ENST00000593919 HECW1Q76N89 1606 aa20.44■□□□□ 0.86
VRK3-205ENST00000593919 KANK4Q5T7N3 995 aaPredicted RBP20.44■□□□□ 0.86
VRK3-205ENST00000593919 ERCC6L2Q5T890 1561 aa20.42■□□□□ 0.86
VRK3-205ENST00000593919 RAPGEF6Q8TEU7 1601 aa20.41■□□□□ 0.86
VRK3-205ENST00000593919 LRRC9Q6ZRR7 1453 aa20.38■□□□□ 0.85
VRK3-205ENST00000593919 PLB1Q6P1J6 1458 aa20.37■□□□□ 0.85
VRK3-205ENST00000593919 OSCARQ8IYS5 282 aa20.37■□□□□ 0.85
VRK3-205ENST00000593919 CCDC18Q5T9S5 1454 aa20.36■□□□□ 0.85
VRK3-205ENST00000593919 EPRSP07814 1512 aaKnown RBP20.35■□□□□ 0.85
VRK3-205ENST00000593919 NUP153P49790 1475 aaKnown RBP20.35■□□□□ 0.85
VRK3-205ENST00000593919 PTPRGP23470 1445 aa20.33■□□□□ 0.85
VRK3-205ENST00000593919 ABCA8O94911 1581 aa20.33■□□□□ 0.84
VRK3-205ENST00000593919 CDK13Q14004 1512 aaKnown RBP20.33■□□□□ 0.84
VRK3-205ENST00000593919 ARID3CA6NKF2 412 aa20.28■□□□□ 0.84
VRK3-205ENST00000593919 MTUS2Q5JR59 1369 aa20.27■□□□□ 0.84
VRK3-205ENST00000593919 MAGI3Q5TCQ9 1506 aa20.27■□□□□ 0.83
VRK3-205ENST00000593919 EHBP1L1Q8N3D4 1523 aa20.26■□□□□ 0.83
VRK3-205ENST00000593919 UACAQ9BZF9 1416 aa20.22■□□□□ 0.83
VRK3-205ENST00000593919 SUPT6HQ7KZ85 1726 aaKnown RBP20.21■□□□□ 0.83
VRK3-205ENST00000593919 ABCC2Q92887 1545 aa20.19■□□□□ 0.82
VRK3-205ENST00000593919 PHLDB1Q86UU1 1377 aa20.19■□□□□ 0.82
VRK3-205ENST00000593919 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.18■□□□□ 0.82
VRK3-205ENST00000593919 HNRNPUL2Q1KMD3 747 aaKnown RBP20.18■□□□□ 0.82
VRK3-205ENST00000593919 ATP10BO94823 1461 aa20.17■□□□□ 0.82
VRK3-205ENST00000593919 RRBP1Q9P2E9 1410 aaKnown RBP20.17■□□□□ 0.82
VRK3-205ENST00000593919 NCOA2Q15596 1464 aa20.16■□□□□ 0.82
VRK3-205ENST00000593919 CDK11AQ9UQ88 783 aaPredicted RBP20.14■□□□□ 0.81
VRK3-205ENST00000593919 ARHGEF11O15085 1522 aa20.14■□□□□ 0.81
VRK3-205ENST00000593919 UHRF1BP1LA0JNW5 1464 aa20.12■□□□□ 0.81
VRK3-205ENST00000593919 TROQ12816 1431 aaPredicted RBP20.11■□□□□ 0.81
VRK3-205ENST00000593919 CCNB3Q8WWL7 1395 aa20.11■□□□□ 0.81
VRK3-205ENST00000593919 ADCY10Q96PN6 1610 aa20.1■□□□□ 0.81
VRK3-205ENST00000593919 ZCCHC11Q5TAX3 1644 aaKnown RBP20.08■□□□□ 0.8
VRK3-205ENST00000593919 KIF14Q15058 1648 aa20.07■□□□□ 0.8
VRK3-205ENST00000593919 MYOM3Q5VTT5 1437 aa20.07■□□□□ 0.8
VRK3-205ENST00000593919 KDM5BQ9UGL1 1544 aa20.06■□□□□ 0.8
VRK3-205ENST00000593919 FGD6Q6ZV73 1430 aa20.05■□□□□ 0.8
VRK3-205ENST00000593919 PLEKHD1A6NEE1 506 aa20.04■□□□□ 0.8
VRK3-205ENST00000593919 RIMBP3CA6NJZ7 1639 aa20.01■□□□□ 0.79
VRK3-205ENST00000593919 RIMBP3BA6NNM3 1639 aa20.01■□□□□ 0.79
VRK3-205ENST00000593919 RIMBP3Q9UFD9 1639 aa20.01■□□□□ 0.79
VRK3-205ENST00000593919 SLC24A1O60721 1099 aa20.01■□□□□ 0.79
VRK3-205ENST00000593919 PTPN23Q9H3S7 1636 aa19.99■□□□□ 0.79
VRK3-205ENST00000593919 FAM50AQ14320 339 aaKnown RBP19.98■□□□□ 0.79
VRK3-205ENST00000593919 ITSN2Q9NZM3 1697 aa19.98■□□□□ 0.79
VRK3-205ENST00000593919 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.96■□□□□ 0.79
VRK3-205ENST00000593919 ABCC10Q5T3U5 1492 aa19.96■□□□□ 0.79
VRK3-205ENST00000593919 CDC42BPAQ5VT25 1732 aa19.95■□□□□ 0.78
VRK3-205ENST00000593919 MIA2Q96PC5 1412 aa19.95■□□□□ 0.78
VRK3-205ENST00000593919 TCOF1Q13428 1488 aaKnown RBP19.93■□□□□ 0.78
VRK3-205ENST00000593919 GPATCH8Q9UKJ3 1502 aaKnown RBP19.93■□□□□ 0.78
VRK3-205ENST00000593919 ITGAEP38570 1179 aa19.92■□□□□ 0.78
VRK3-205ENST00000593919 TTC37Q6PGP7 1564 aa19.9■□□□□ 0.78
VRK3-205ENST00000593919 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.89■□□□□ 0.78
VRK3-205ENST00000593919 WDR7Q9Y4E6 1490 aa19.88■□□□□ 0.77
VRK3-205ENST00000593919 CDC42BPBQ9Y5S2 1711 aa19.87■□□□□ 0.77
VRK3-205ENST00000593919 PREX2Q70Z35 1606 aa19.87■□□□□ 0.77
VRK3-205ENST00000593919 ZEB1P37275 1124 aaPredicted RBP19.86■□□□□ 0.77
VRK3-205ENST00000593919 CYB5RLQ6IPT4 315 aa19.86■□□□□ 0.77
VRK3-205ENST00000593919 KCNH8Q96L42 1107 aa19.86■□□□□ 0.77
VRK3-205ENST00000593919 MYO5CQ9NQX4 1742 aa19.85■□□□□ 0.77
VRK3-205ENST00000593919 CFDP1Q9UEE9 299 aaPredicted RBP19.85■□□□□ 0.77
VRK3-205ENST00000593919 ASXL2Q76L83 1435 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 230.9 ms