RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ZNF326Q5BKZ1 582 aaKnown RBP14.05□□□□□ -0.16
LIG3-216ENST00000593099 RAPGEF2Q9Y4G8 1499 aa14.05□□□□□ -0.16
LIG3-216ENST00000593099 UNC13AQ9UPW8 1703 aa14.04□□□□□ -0.16
LIG3-216ENST00000593099 STAG3Q9UJ98 1225 aa14.04□□□□□ -0.16
LIG3-216ENST00000593099 GAPVD1Q14C86 1478 aa14.03□□□□□ -0.16
LIG3-216ENST00000593099 SLC4A1APQ9BWU0 796 aaKnown RBP14.03□□□□□ -0.16
LIG3-216ENST00000593099 RAD54L2Q9Y4B4 1467 aa14.03□□□□□ -0.16
LIG3-216ENST00000593099 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.03□□□□□ -0.16
LIG3-216ENST00000593099 CHGAP10645 457 aaKnown RBP14□□□□□ -0.17
LIG3-216ENST00000593099 AQRO60306 1485 aaKnown RBP eCLIP13.98□□□□□ -0.171e-6■■■■■ 34.4
LIG3-216ENST00000593099 ARID4BQ4LE39 1312 aaPredicted RBP13.96□□□□□ -0.17
LIG3-216ENST00000593099 LAMC3Q9Y6N6 1575 aa13.95□□□□□ -0.18
LIG3-216ENST00000593099 IFT140Q96RY7 1462 aa13.95□□□□□ -0.18
LIG3-216ENST00000593099 FMN1Q68DA7 1419 aa13.95□□□□□ -0.18
LIG3-216ENST00000593099 IGF1RP08069 1367 aa13.94□□□□□ -0.18
LIG3-216ENST00000593099 CCNB3Q8WWL7 1395 aa13.94□□□□□ -0.18
LIG3-216ENST00000593099 CYB5RLQ6IPT4 315 aa13.94□□□□□ -0.18
LIG3-216ENST00000593099 TOPBP1Q92547 1522 aa13.92□□□□□ -0.18
LIG3-216ENST00000593099 HRCP23327 699 aa13.92□□□□□ -0.18
LIG3-216ENST00000593099 GRIN2BQ13224 1484 aa13.92□□□□□ -0.18
LIG3-216ENST00000593099 RRP7BPQ9NSQ0 103 aa13.92□□□□□ -0.18
LIG3-216ENST00000593099 PEG3Q9GZU2 1588 aa13.92□□□□□ -0.18
LIG3-216ENST00000593099 CNGB1Q14028 1251 aaPredicted RBP13.91□□□□□ -0.18
LIG3-216ENST00000593099 PTPRGP23470 1445 aa13.9□□□□□ -0.18
LIG3-216ENST00000593099 RUSC2Q8N2Y8 1516 aa13.88□□□□□ -0.19
LIG3-216ENST00000593099 ACIN1Q9UKV3 1341 aaKnown RBP13.87□□□□□ -0.19
LIG3-216ENST00000593099 VPS8Q8N3P4 1428 aa13.86□□□□□ -0.19
LIG3-216ENST00000593099 POLA1P09884 1462 aaPredicted RBP13.86□□□□□ -0.19
LIG3-216ENST00000593099 FHOD3Q2V2M9 1422 aa13.86□□□□□ -0.19
LIG3-216ENST00000593099 EFCAB2Q5VUJ9 269 aa13.85□□□□□ -0.19
LIG3-216ENST00000593099 CENPBP07199 599 aaPredicted RBP13.84□□□□□ -0.19
LIG3-216ENST00000593099 DNMBPQ6XZF7 1577 aa13.84□□□□□ -0.19
LIG3-216ENST00000593099 TONSLQ96HA7 1378 aa13.83□□□□□ -0.2
LIG3-216ENST00000593099 CUX1P39880 1505 aa13.81□□□□□ -0.2
LIG3-216ENST00000593099 SYNJ1O43426 1573 aa13.77□□□□□ -0.2
LIG3-216ENST00000593099 PPP1R15AO75807 674 aaPredicted RBP13.76□□□□□ -0.21
LIG3-216ENST00000593099 TOP2BQ02880 1626 aa13.75□□□□□ -0.21
LIG3-216ENST00000593099 YTHDC1Q96MU7 727 aaKnown RBP13.75□□□□□ -0.21
LIG3-216ENST00000593099 MLECQ14165 292 aa13.74□□□□□ -0.21
LIG3-216ENST00000593099 SNAPC4Q5SXM2 1469 aa13.74□□□□□ -0.21
LIG3-216ENST00000593099 ARHGAP35Q9NRY4 1499 aa13.74□□□□□ -0.21
LIG3-216ENST00000593099 KANK4Q5T7N3 995 aaPredicted RBP13.73□□□□□ -0.21
LIG3-216ENST00000593099 KDM2AQ9Y2K7 1162 aa13.72□□□□□ -0.21
LIG3-216ENST00000593099 CCDC18Q5T9S5 1454 aa13.71□□□□□ -0.21
LIG3-216ENST00000593099 KANK1Q14678 1352 aa13.7□□□□□ -0.22
LIG3-216ENST00000593099 PRG4Q92954 1404 aaPredicted RBP13.7□□□□□ -0.22
LIG3-216ENST00000593099 URB2Q14146 1524 aaKnown RBP13.69□□□□□ -0.22
LIG3-216ENST00000593099 ABCA10Q8WWZ4 1543 aa13.69□□□□□ -0.22
LIG3-216ENST00000593099 RSPH4AQ5TD94 716 aa13.69□□□□□ -0.22
LIG3-216ENST00000593099 NEFLP07196 543 aa13.68□□□□□ -0.22
LIG3-216ENST00000593099 GGT6Q6P531 493 aa13.68□□□□□ -0.22
LIG3-216ENST00000593099 FAM69CQ0P6D2 419 aa13.66□□□□□ -0.22
LIG3-216ENST00000593099 RGL3Q3MIN7 710 aa13.66□□□□□ -0.22
LIG3-216ENST00000593099 SPAG9O60271 1321 aaKnown RBP13.65□□□□□ -0.22
LIG3-216ENST00000593099 HNRNPMP52272 730 aaKnown RBP eCLIP13.64□□□□□ -0.23
LIG3-216ENST00000593099 DIEXFQ68CQ4 756 aaKnown RBP13.62□□□□□ -0.23
LIG3-216ENST00000593099 ANP32CO43423 234 aa13.62□□□□□ -0.23
LIG3-216ENST00000593099 SENP3Q9H4L4 574 aaPredicted RBP13.61□□□□□ -0.23
LIG3-216ENST00000593099 ANKRD30AQ9BXX3 1397 aa13.61□□□□□ -0.23
LIG3-216ENST00000593099 SYNJ2O15056 1496 aa13.61□□□□□ -0.23
LIG3-216ENST00000593099 ERICH3Q5RHP9 1530 aa13.61□□□□□ -0.23
LIG3-216ENST00000593099 MAGI1Q96QZ7 1491 aaPredicted RBP13.61□□□□□ -0.23
LIG3-216ENST00000593099 PRXQ9BXM0 1461 aa13.6□□□□□ -0.23
LIG3-216ENST00000593099 C14orf37Q86TY3 774 aa13.6□□□□□ -0.23
LIG3-216ENST00000593099 ZNF316A6NFI3 1004 aaPredicted RBP13.6□□□□□ -0.23
LIG3-216ENST00000593099 KIF3BO15066 747 aa13.58□□□□□ -0.23
LIG3-216ENST00000593099 KIAA0586Q9BVV6 1533 aa13.58□□□□□ -0.24
LIG3-216ENST00000593099 HDGFP51858 240 aaKnown RBP13.58□□□□□ -0.24
LIG3-216ENST00000593099 ZNF608Q9ULD9 1512 aaPredicted RBP13.58□□□□□ -0.24
LIG3-216ENST00000593099 NEFMP07197 916 aa13.56□□□□□ -0.24
LIG3-216ENST00000593099 KIF21BO75037 1637 aa13.55□□□□□ -0.24
LIG3-216ENST00000593099 GRIN2AQ12879 1464 aa13.53□□□□□ -0.24
LIG3-216ENST00000593099 SETD5Q9C0A6 1442 aa13.52□□□□□ -0.25
LIG3-216ENST00000593099 NUP155O75694 1391 aa13.51□□□□□ -0.25
LIG3-216ENST00000593099 SLC24A1O60721 1099 aa13.51□□□□□ -0.25
LIG3-216ENST00000593099 PKD2Q13563 968 aa13.51□□□□□ -0.25
LIG3-216ENST00000593099 CASKIN1Q8WXD9 1431 aa13.5□□□□□ -0.25
LIG3-216ENST00000593099 WASHC2CQ9Y4E1 1318 aa13.5□□□□□ -0.25
LIG3-216ENST00000593099 PRDM2Q13029 1718 aa13.5□□□□□ -0.25
LIG3-216ENST00000593099 EIF4G2P78344 907 aaKnown RBP eCLIP13.49□□□□□ -0.25
LIG3-216ENST00000593099 EFCAB5A4FU69 1503 aa13.49□□□□□ -0.25
LIG3-216ENST00000593099 POGKQ9P215 609 aa13.46□□□□□ -0.25
LIG3-216ENST00000593099 CUL7Q14999 1698 aa13.46□□□□□ -0.25
LIG3-216ENST00000593099 UACAQ9BZF9 1416 aa13.46□□□□□ -0.26
LIG3-216ENST00000593099 SIN3AQ96ST3 1273 aa13.45□□□□□ -0.26
LIG3-216ENST00000593099 SCAF1Q9H7N4 1312 aaKnown RBP13.44□□□□□ -0.26
LIG3-216ENST00000593099 IQGAP2Q13576 1575 aa13.44□□□□□ -0.26
LIG3-216ENST00000593099 CARD11Q9BXL7 1154 aa13.44□□□□□ -0.26
LIG3-216ENST00000593099 CLSPNQ9HAW4 1339 aa13.44□□□□□ -0.26
LIG3-216ENST00000593099 BIVM-ERCC5R4GMW8 1640 aa13.44□□□□□ -0.26
LIG3-216ENST00000593099 CDCA8Q53HL2 280 aa13.43□□□□□ -0.26
LIG3-216ENST00000593099 DCAF11Q8TEB1 546 aa13.43□□□□□ -0.26
LIG3-216ENST00000593099 MPHOSPH9Q99550 1183 aa13.43□□□□□ -0.26
LIG3-216ENST00000593099 ARAP1Q96P48 1450 aa13.42□□□□□ -0.26
LIG3-216ENST00000593099 MYOM3Q5VTT5 1437 aa13.42□□□□□ -0.26
LIG3-216ENST00000593099 TMC1Q8TDI8 760 aa13.42□□□□□ -0.26
LIG3-216ENST00000593099 FYCO1Q9BQS8 1478 aa13.42□□□□□ -0.26
LIG3-216ENST00000593099 DDX10Q13206 875 aaKnown RBP13.4□□□□□ -0.26
LIG3-216ENST00000593099 RAB3GAP2Q9H2M9 1393 aa13.4□□□□□ -0.27
LIG3-216ENST00000593099 EID1Q9Y6B2 187 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms