RNA–Protein interactions for RNA: ENST00000592158.1

SMARCA4-218, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 409 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-218ENST00000592158 TOP2AP11388 1531 aaKnown RBP17.62■□□□□ 0.41
SMARCA4-218ENST00000592158 SHROOM2Q13796 1616 aa17.61■□□□□ 0.41
SMARCA4-218ENST00000592158 PBRM1Q86U86 1689 aa17.6■□□□□ 0.41
SMARCA4-218ENST00000592158 COL17A1Q9UMD9 1497 aaPredicted RBP17.55■□□□□ 0.4
SMARCA4-218ENST00000592158 GRIN2AQ12879 1464 aa17.54■□□□□ 0.4
SMARCA4-218ENST00000592158 PPRC1Q5VV67 1664 aaKnown RBP17.53■□□□□ 0.4
SMARCA4-218ENST00000592158 NUP160Q12769 1436 aa17.53■□□□□ 0.4
SMARCA4-218ENST00000592158 FGD5Q6ZNL6 1462 aa17.52■□□□□ 0.4
SMARCA4-218ENST00000592158 ADCY10Q96PN6 1610 aa17.51■□□□□ 0.39
SMARCA4-218ENST00000592158 PRG4Q92954 1404 aaPredicted RBP17.5■□□□□ 0.39
SMARCA4-218ENST00000592158 CCDC88BA6NC98 1476 aa17.47■□□□□ 0.39
SMARCA4-218ENST00000592158 PCF11O94913 1555 aaKnown RBP17.42■□□□□ 0.38
SMARCA4-218ENST00000592158 JPH4Q96JJ6 628 aa17.38■□□□□ 0.37
SMARCA4-218ENST00000592158 PTPRMP28827 1452 aa17.37■□□□□ 0.37
SMARCA4-218ENST00000592158 GLI2P10070 1586 aa17.35■□□□□ 0.37
SMARCA4-218ENST00000592158 ABCA5Q8WWZ7 1642 aa17.33■□□□□ 0.37
SMARCA4-218ENST00000592158 ADAMTS12P58397 1594 aa17.32■□□□□ 0.36
SMARCA4-218ENST00000592158 KIF21BO75037 1637 aa17.29■□□□□ 0.36
SMARCA4-218ENST00000592158 HSPA2P54652 639 aa17.29■□□□□ 0.36
SMARCA4-218ENST00000592158 TEX14Q8IWB6 1497 aa17.27■□□□□ 0.36
SMARCA4-218ENST00000592158 CUX1P39880 1505 aa17.26■□□□□ 0.35
SMARCA4-218ENST00000592158 ASXL2Q76L83 1435 aa17.24■□□□□ 0.35
SMARCA4-218ENST00000592158 PLB1Q6P1J6 1458 aa17.23■□□□□ 0.35
SMARCA4-218ENST00000592158 ADAMTSL3P82987 1691 aa17.23■□□□□ 0.35
SMARCA4-218ENST00000592158 ABCA10Q8WWZ4 1543 aa17.22■□□□□ 0.35
SMARCA4-218ENST00000592158 MAP3K4Q9Y6R4 1608 aa17.21■□□□□ 0.35
SMARCA4-218ENST00000592158 FHAD1B1AJZ9 1412 aa17.21■□□□□ 0.34
SMARCA4-218ENST00000592158 EPRSP07814 1512 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-218ENST00000592158 ABCC2Q92887 1545 aa17.12■□□□□ 0.33
SMARCA4-218ENST00000592158 RUSC2Q8N2Y8 1516 aa17.11■□□□□ 0.33
SMARCA4-218ENST00000592158 KIAA0586Q9BVV6 1533 aa17.09■□□□□ 0.33
SMARCA4-218ENST00000592158 CUL7Q14999 1698 aa17.09■□□□□ 0.33
SMARCA4-218ENST00000592158 MADDQ8WXG6 1647 aa17.08■□□□□ 0.32
SMARCA4-218ENST00000592158 TTBK1Q5TCY1 1321 aaPredicted RBP17.04■□□□□ 0.32
SMARCA4-218ENST00000592158 PTPRGP23470 1445 aa17.04■□□□□ 0.32
SMARCA4-218ENST00000592158 BCORL1Q5H9F3 1711 aa17.03■□□□□ 0.32
SMARCA4-218ENST00000592158 PLPPR3Q6T4P5 718 aa17■□□□□ 0.31
SMARCA4-218ENST00000592158 MED1Q15648 1581 aaPredicted RBP16.99■□□□□ 0.31
SMARCA4-218ENST00000592158 RIMS1Q86UR5 1692 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-218ENST00000592158 ERICH3Q5RHP9 1530 aa16.96■□□□□ 0.31
SMARCA4-218ENST00000592158 DMRT2Q9Y5R5 561 aa16.96■□□□□ 0.31
SMARCA4-218ENST00000592158 ARID4BQ4LE39 1312 aaPredicted RBP16.94■□□□□ 0.3
SMARCA4-218ENST00000592158 YEATS2Q9ULM3 1422 aa16.92■□□□□ 0.3
SMARCA4-218ENST00000592158 IQSEC2Q5JU85 1478 aa16.92■□□□□ 0.3
SMARCA4-218ENST00000592158 MAGI3Q5TCQ9 1506 aa16.91■□□□□ 0.3
SMARCA4-218ENST00000592158 UHRF1BP1LA0JNW5 1464 aa16.91■□□□□ 0.3
SMARCA4-218ENST00000592158 STRCQ7RTU9 1775 aa16.89■□□□□ 0.3
SMARCA4-218ENST00000592158 CD109Q6YHK3 1445 aa16.89■□□□□ 0.29
SMARCA4-218ENST00000592158 PHF23Q9BUL5 403 aaPredicted RBP16.88■□□□□ 0.29
SMARCA4-218ENST00000592158 LTBP4Q8N2S1 1624 aa16.86■□□□□ 0.29
SMARCA4-218ENST00000592158 TNIKQ9UKE5 1360 aa16.86■□□□□ 0.29
SMARCA4-218ENST00000592158 KDM5BQ9UGL1 1544 aa16.86■□□□□ 0.29
SMARCA4-218ENST00000592158 WRNQ14191 1432 aaPredicted RBP eCLIP16.85■□□□□ 0.29
SMARCA4-218ENST00000592158 UACAQ9BZF9 1416 aa16.84■□□□□ 0.29
SMARCA4-218ENST00000592158 CFAP43Q8NDM7 1665 aa16.84■□□□□ 0.29
SMARCA4-218ENST00000592158 UBAP1LF5GYI3 381 aa16.83■□□□□ 0.28
SMARCA4-218ENST00000592158 ZCCHC11Q5TAX3 1644 aaKnown RBP16.83■□□□□ 0.28
SMARCA4-218ENST00000592158 ARAP3Q8WWN8 1544 aa16.83■□□□□ 0.28
SMARCA4-218ENST00000592158 WDR7Q9Y4E6 1490 aa16.8■□□□□ 0.28
SMARCA4-218ENST00000592158 PTPRTO14522 1441 aa16.78■□□□□ 0.28
SMARCA4-218ENST00000592158 CARMIL2Q6F5E8 1435 aa16.76■□□□□ 0.27
SMARCA4-218ENST00000592158 PREX1Q8TCU6 1659 aa16.75■□□□□ 0.27
SMARCA4-218ENST00000592158 HSPA1LP34931 641 aa16.74■□□□□ 0.27
SMARCA4-218ENST00000592158 RAPGEF3O95398 923 aa16.73■□□□□ 0.27
SMARCA4-218ENST00000592158 KCNH8Q96L42 1107 aa16.73■□□□□ 0.27
SMARCA4-218ENST00000592158 TTC37Q6PGP7 1564 aa16.64■□□□□ 0.25
SMARCA4-218ENST00000592158 POGZQ7Z3K3 1410 aa16.64■□□□□ 0.25
SMARCA4-218ENST00000592158 SCAF1Q9H7N4 1312 aaKnown RBP16.64■□□□□ 0.25
SMARCA4-218ENST00000592158 FER1L4A9Z1Z3 1794 aa16.64■□□□□ 0.25
SMARCA4-218ENST00000592158 PHLDB1Q86UU1 1377 aa16.63■□□□□ 0.25
SMARCA4-218ENST00000592158 UHRF1BP1Q6BDS2 1440 aa16.61■□□□□ 0.25
SMARCA4-218ENST00000592158 ARHGEF40Q8TER5 1519 aa16.6■□□□□ 0.25
SMARCA4-218ENST00000592158 MLECQ14165 292 aa16.6■□□□□ 0.25
SMARCA4-218ENST00000592158 FRMPD1Q5SYB0 1578 aa16.6■□□□□ 0.25
SMARCA4-218ENST00000592158 SRCAPQ6ZRS2 3230 aa16.59■□□□□ 0.25
SMARCA4-218ENST00000592158 FANCAO15360 1455 aa16.59■□□□□ 0.25
SMARCA4-218ENST00000592158 CEBPAP49715 358 aaPredicted RBP16.58■□□□□ 0.24
SMARCA4-218ENST00000592158 PIP4K2BP78356 416 aa16.58■□□□□ 0.24
SMARCA4-218ENST00000592158 RGS17Q9UGC6 210 aaPredicted RBP16.57■□□□□ 0.24
SMARCA4-218ENST00000592158 SETD1BQ9UPS6 1966 aaKnown RBP16.57■□□□□ 0.24
SMARCA4-218ENST00000592158 BIVM-ERCC5R4GMW8 1640 aa16.56■□□□□ 0.24
SMARCA4-218ENST00000592158 SIGLEC1Q9BZZ2 1709 aa16.54■□□□□ 0.24
SMARCA4-218ENST00000592158 ZNF335Q9H4Z2 1342 aaPredicted RBP16.54■□□□□ 0.24
SMARCA4-218ENST00000592158 DISP1Q96F81 1524 aa16.53■□□□□ 0.24
SMARCA4-218ENST00000592158 NEO1Q92859 1461 aa16.48■□□□□ 0.23
SMARCA4-218ENST00000592158 IQGAP2Q13576 1575 aa16.48■□□□□ 0.23
SMARCA4-218ENST00000592158 AKNAQ7Z591 1439 aa16.48■□□□□ 0.23
SMARCA4-218ENST00000592158 NCOA1Q15788 1441 aa16.46■□□□□ 0.23
SMARCA4-218ENST00000592158 TOM1O60784 492 aa16.46■□□□□ 0.23
SMARCA4-218ENST00000592158 ARHGEF12Q9NZN5 1544 aa16.43■□□□□ 0.22
SMARCA4-218ENST00000592158 SETD1AO15047 1707 aaKnown RBP16.42■□□□□ 0.22
SMARCA4-218ENST00000592158 POTEAQ6S8J7 498 aa16.42■□□□□ 0.22
SMARCA4-218ENST00000592158 RICTORQ6R327 1708 aa16.41■□□□□ 0.22
SMARCA4-218ENST00000592158 ABCA9Q8IUA7 1624 aa16.41■□□□□ 0.22
SMARCA4-218ENST00000592158 IGF1RP08069 1367 aa16.4■□□□□ 0.22
SMARCA4-218ENST00000592158 DENND4BO75064 1496 aaPredicted RBP16.38■□□□□ 0.21
SMARCA4-218ENST00000592158 KIAA0556O60303 1618 aa16.37■□□□□ 0.21
SMARCA4-218ENST00000592158 ZFYVE16Q7Z3T8 1539 aa16.37■□□□□ 0.21
SMARCA4-218ENST00000592158 SENP3Q9H4L4 574 aaPredicted RBP16.37■□□□□ 0.21
SMARCA4-218ENST00000592158 EFCAB5A4FU69 1503 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms