RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 CARMIL1Q5VZK9 1371 aa16.28■□□□□ 0.2
VPS4B-206ENST00000591475 GRIN2BQ13224 1484 aa16.26■□□□□ 0.19
VPS4B-206ENST00000591475 RAPGEF2Q9Y4G8 1499 aa16.26■□□□□ 0.19
VPS4B-206ENST00000591475 ZNF316A6NFI3 1004 aaPredicted RBP16.24■□□□□ 0.19
VPS4B-206ENST00000591475 EIF4G3O43432 1585 aaKnown RBP16.24■□□□□ 0.19
VPS4B-206ENST00000591475 CUL7Q14999 1698 aa16.24■□□□□ 0.19
VPS4B-206ENST00000591475 GTF3C3Q9Y5Q9 886 aa16.21■□□□□ 0.19
VPS4B-206ENST00000591475 PBRM1Q86U86 1689 aa16.2■□□□□ 0.18
VPS4B-206ENST00000591475 CLIP1P30622 1438 aa16.19■□□□□ 0.18
VPS4B-206ENST00000591475 FHAD1B1AJZ9 1412 aa16.17■□□□□ 0.18
VPS4B-206ENST00000591475 VPS8Q8N3P4 1428 aa16.16■□□□□ 0.18
VPS4B-206ENST00000591475 MAGI1Q96QZ7 1491 aaPredicted RBP16.15■□□□□ 0.18
VPS4B-206ENST00000591475 SNAPC4Q5SXM2 1469 aa16.14■□□□□ 0.17
VPS4B-206ENST00000591475 ADAMTS12P58397 1594 aa16.13■□□□□ 0.17
VPS4B-206ENST00000591475 HNRNPUL2Q1KMD3 747 aaKnown RBP16.11■□□□□ 0.17
VPS4B-206ENST00000591475 SYNJ2O15056 1496 aa16.09■□□□□ 0.17
VPS4B-206ENST00000591475 APLP2Q06481 763 aa16.08■□□□□ 0.16
VPS4B-206ENST00000591475 CHMP7Q8WUX9 453 aaPredicted RBP16.07■□□□□ 0.16
VPS4B-206ENST00000591475 GRIN2AQ12879 1464 aa16.05■□□□□ 0.16
VPS4B-206ENST00000591475 FBLN2P98095 1184 aa16.04■□□□□ 0.16
VPS4B-206ENST00000591475 RANGAP1P46060 587 aaPredicted RBP16■□□□□ 0.15
VPS4B-206ENST00000591475 MIER1Q8N108 512 aa15.99■□□□□ 0.15
VPS4B-206ENST00000591475 CTTNBP2Q8WZ74 1663 aa15.99■□□□□ 0.15
VPS4B-206ENST00000591475 YTHDC1Q96MU7 727 aaKnown RBP15.99■□□□□ 0.15
VPS4B-206ENST00000591475 KIAA0586Q9BVV6 1533 aa15.96■□□□□ 0.14
VPS4B-206ENST00000591475 CLSPNQ9HAW4 1339 aa15.95■□□□□ 0.14
VPS4B-206ENST00000591475 NUP160Q12769 1436 aa15.94■□□□□ 0.14
VPS4B-206ENST00000591475 IQGAP2Q13576 1575 aa15.93■□□□□ 0.14
VPS4B-206ENST00000591475 CEP170Q5SW79 1584 aa15.92■□□□□ 0.14
VPS4B-206ENST00000591475 ARHGAP35Q9NRY4 1499 aa15.92■□□□□ 0.14
VPS4B-206ENST00000591475 ARAP1Q96P48 1450 aa15.91■□□□□ 0.14
VPS4B-206ENST00000591475 EFCAB5A4FU69 1503 aa15.9■□□□□ 0.14
VPS4B-206ENST00000591475 CHD1O14646 1710 aa15.89■□□□□ 0.13
VPS4B-206ENST00000591475 MYT1Q01538 1121 aa15.89■□□□□ 0.13
VPS4B-206ENST00000591475 DHX57Q6P158 1386 aaKnown RBP15.87■□□□□ 0.13
VPS4B-206ENST00000591475 UGGT2Q9NYU1 1516 aa15.86■□□□□ 0.13
VPS4B-206ENST00000591475 SAMD9Q5K651 1589 aa15.84■□□□□ 0.13
VPS4B-206ENST00000591475 P3H3Q8IVL6 736 aa15.84■□□□□ 0.13
VPS4B-206ENST00000591475 JPH4Q96JJ6 628 aa15.84■□□□□ 0.13
VPS4B-206ENST00000591475 RRBP1Q9P2E9 1410 aaKnown RBP15.82■□□□□ 0.12
VPS4B-206ENST00000591475 FHOD3Q2V2M9 1422 aa15.8■□□□□ 0.12
VPS4B-206ENST00000591475 KANK4Q5T7N3 995 aaPredicted RBP15.78■□□□□ 0.12
VPS4B-206ENST00000591475 DISP1Q96F81 1524 aa15.78■□□□□ 0.12
VPS4B-206ENST00000591475 FMN1Q68DA7 1419 aa15.78■□□□□ 0.12
VPS4B-206ENST00000591475 CARMIL2Q6F5E8 1435 aa15.78■□□□□ 0.12
VPS4B-206ENST00000591475 OSCARQ8IYS5 282 aa15.76■□□□□ 0.11
VPS4B-206ENST00000591475 CLASP1Q7Z460 1538 aa15.76■□□□□ 0.11
VPS4B-206ENST00000591475 KIAA0556O60303 1618 aa15.75■□□□□ 0.11
VPS4B-206ENST00000591475 PRG4Q92954 1404 aaPredicted RBP15.73■□□□□ 0.11
VPS4B-206ENST00000591475 SHROOM2Q13796 1616 aa15.72■□□□□ 0.11
VPS4B-206ENST00000591475 CCNB3Q8WWL7 1395 aa15.72■□□□□ 0.11
VPS4B-206ENST00000591475 CASKIN1Q8WXD9 1431 aa15.7■□□□□ 0.1
VPS4B-206ENST00000591475 FYCO1Q9BQS8 1478 aa15.69■□□□□ 0.1
VPS4B-206ENST00000591475 PCF11O94913 1555 aaKnown RBP15.67■□□□□ 0.1
VPS4B-206ENST00000591475 MAP3K1Q13233 1512 aa15.67■□□□□ 0.1
VPS4B-206ENST00000591475 ATP1B4Q9UN42 357 aaPredicted RBP15.67■□□□□ 0.1
VPS4B-206ENST00000591475 TIAM1Q13009 1591 aa15.65■□□□□ 0.1
VPS4B-206ENST00000591475 PTPRGP23470 1445 aa15.63■□□□□ 0.09
VPS4B-206ENST00000591475 DNAJC5Q9H3Z4 198 aa15.62■□□□□ 0.09
VPS4B-206ENST00000591475 RAB3GAP2Q9H2M9 1393 aa15.6■□□□□ 0.09
VPS4B-206ENST00000591475 MAPKBP1O60336 1514 aa15.6■□□□□ 0.09
VPS4B-206ENST00000591475 ERCC6L2Q5T890 1561 aa15.6■□□□□ 0.09
VPS4B-206ENST00000591475 HECW1Q76N89 1606 aa15.6■□□□□ 0.09
VPS4B-206ENST00000591475 ITGAEP38570 1179 aa15.58■□□□□ 0.09
VPS4B-206ENST00000591475 SUPT16HQ9Y5B9 1047 aaKnown RBP15.58■□□□□ 0.09
VPS4B-206ENST00000591475 PLB1Q6P1J6 1458 aa15.58■□□□□ 0.08
VPS4B-206ENST00000591475 CCDC18Q5T9S5 1454 aa15.58■□□□□ 0.08
VPS4B-206ENST00000591475 RAPGEF6Q8TEU7 1601 aa15.58■□□□□ 0.08
VPS4B-206ENST00000591475 CFAP43Q8NDM7 1665 aa15.57■□□□□ 0.08
VPS4B-206ENST00000591475 LRRC9Q6ZRR7 1453 aa15.56■□□□□ 0.08
VPS4B-206ENST00000591475 SETD5Q9C0A6 1442 aa15.55■□□□□ 0.08
VPS4B-206ENST00000591475 EPRSP07814 1512 aaKnown RBP15.55■□□□□ 0.08
VPS4B-206ENST00000591475 NUP153P49790 1475 aaKnown RBP15.55■□□□□ 0.08
VPS4B-206ENST00000591475 ABCA8O94911 1581 aa15.54■□□□□ 0.08
VPS4B-206ENST00000591475 UACAQ9BZF9 1416 aa15.53■□□□□ 0.08
VPS4B-206ENST00000591475 LRRIQ1Q96JM4 1722 aa15.51■□□□□ 0.07
VPS4B-206ENST00000591475 MTUS2Q5JR59 1369 aa15.5■□□□□ 0.07
VPS4B-206ENST00000591475 ARID3CA6NKF2 412 aa15.5■□□□□ 0.07
VPS4B-206ENST00000591475 CDK11AQ9UQ88 783 aaPredicted RBP15.5■□□□□ 0.07
VPS4B-206ENST00000591475 CDK13Q14004 1512 aaKnown RBP15.49■□□□□ 0.07
VPS4B-206ENST00000591475 PHLDB1Q86UU1 1377 aa15.48■□□□□ 0.07
VPS4B-206ENST00000591475 ABCC2Q92887 1545 aa15.47■□□□□ 0.07
VPS4B-206ENST00000591475 UHRF1BP1LA0JNW5 1464 aa15.46■□□□□ 0.07
VPS4B-206ENST00000591475 ARHGEF11O15085 1522 aa15.46■□□□□ 0.06
VPS4B-206ENST00000591475 ATP10BO94823 1461 aa15.45■□□□□ 0.06
VPS4B-206ENST00000591475 EHBP1L1Q8N3D4 1523 aa15.45■□□□□ 0.06
VPS4B-206ENST00000591475 FAM50AQ14320 339 aaKnown RBP15.44■□□□□ 0.06
VPS4B-206ENST00000591475 TIMELESSQ9UNS1 1208 aa15.44■□□□□ 0.06
VPS4B-206ENST00000591475 MAGI3Q5TCQ9 1506 aa15.42■□□□□ 0.06
VPS4B-206ENST00000591475 PLEKHD1A6NEE1 506 aa15.42■□□□□ 0.06
VPS4B-206ENST00000591475 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.4■□□□□ 0.06
VPS4B-206ENST00000591475 KCNH8Q96L42 1107 aa15.4■□□□□ 0.06
VPS4B-206ENST00000591475 KDM5BQ9UGL1 1544 aa15.4■□□□□ 0.06
VPS4B-206ENST00000591475 SIN3AQ96ST3 1273 aa15.39■□□□□ 0.05
VPS4B-206ENST00000591475 TROQ12816 1431 aaPredicted RBP15.39■□□□□ 0.05
VPS4B-206ENST00000591475 SUPT6HQ7KZ85 1726 aaKnown RBP15.38■□□□□ 0.05
VPS4B-206ENST00000591475 NCOA2Q15596 1464 aa15.38■□□□□ 0.05
VPS4B-206ENST00000591475 DDX10Q13206 875 aaKnown RBP15.38■□□□□ 0.05
VPS4B-206ENST00000591475 TSHZ2Q9NRE2 1034 aa15.38■□□□□ 0.05
VPS4B-206ENST00000591475 ADCY10Q96PN6 1610 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms