RNA–Protein interactions for RNA: ENST00000589797.5

RETREG3-208, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 4,149 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-208ENST00000589797 ERICH6Q7L0X2 663 aa20.39■□□□□ 0.85
RETREG3-208ENST00000589797 DNAJC5BQ9UF47 199 aa20.37■□□□□ 0.85
RETREG3-208ENST00000589797 SENP3Q9H4L4 574 aaPredicted RBP20.32■□□□□ 0.84
RETREG3-208ENST00000589797 EIF4G1Q04637 1599 aaKnown RBP20.31■□□□□ 0.84
RETREG3-208ENST00000589797 FAM9BQ8IZU0 186 aa20.3■□□□□ 0.84
RETREG3-208ENST00000589797 FOXD1Q16676 465 aa20.3■□□□□ 0.84
RETREG3-208ENST00000589797 TSPY4P0CV99 314 aa20.29■□□□□ 0.84
RETREG3-208ENST00000589797 TSPY10P0CW01 314 aa20.29■□□□□ 0.84
RETREG3-208ENST00000589797 FHOD3Q2V2M9 1422 aa20.28■□□□□ 0.84
RETREG3-208ENST00000589797 CFDP1Q9UEE9 299 aaPredicted RBP20.28■□□□□ 0.84
RETREG3-208ENST00000589797 SALL2Q9Y467 1007 aaPredicted RBP20.27■□□□□ 0.84
RETREG3-208ENST00000589797 HNRNPUQ00839 825 aaKnown RBP eCLIP20.27■□□□□ 0.83
RETREG3-208ENST00000589797 ERCC6Q03468 1493 aa20.26■□□□□ 0.83
RETREG3-208ENST00000589797 PLEKHD1A6NEE1 506 aa20.25■□□□□ 0.83
RETREG3-208ENST00000589797 FKBP8Q14318 412 aa20.24■□□□□ 0.83
RETREG3-208ENST00000589797 RGL3Q3MIN7 710 aa20.24■□□□□ 0.83
RETREG3-208ENST00000589797 IGF1RP08069 1367 aa20.23■□□□□ 0.83
RETREG3-208ENST00000589797 CHGAP10645 457 aaKnown RBP20.22■□□□□ 0.83
RETREG3-208ENST00000589797 RAD54L2Q9Y4B4 1467 aa20.22■□□□□ 0.83
RETREG3-208ENST00000589797 SYNJ1O43426 1573 aa20.2■□□□□ 0.82
RETREG3-208ENST00000589797 FANCD2Q9BXW9 1451 aa20.2■□□□□ 0.82
RETREG3-208ENST00000589797 BICRAQ9NZM4 1560 aa20.19■□□□□ 0.82
RETREG3-208ENST00000589797 RAB3GAP2Q9H2M9 1393 aa20.18■□□□□ 0.82
RETREG3-208ENST00000589797 FHAD1B1AJZ9 1412 aa20.18■□□□□ 0.82
RETREG3-208ENST00000589797 IRX6P78412 446 aaPredicted RBP20.18■□□□□ 0.82
RETREG3-208ENST00000589797 NCAPD3P42695 1498 aa20.17■□□□□ 0.82
RETREG3-208ENST00000589797 PDS5BQ9NTI5 1447 aa20.16■□□□□ 0.82
RETREG3-208ENST00000589797 NESP48681 1621 aa20.13■□□□□ 0.81
RETREG3-208ENST00000589797 FGD5Q6ZNL6 1462 aa20.12■□□□□ 0.81
RETREG3-208ENST00000589797 EIF4G2P78344 907 aaKnown RBP eCLIP20.11■□□□□ 0.81
RETREG3-208ENST00000589797 PLPPR3Q6T4P5 718 aa20.08■□□□□ 0.8
RETREG3-208ENST00000589797 MRS2Q9HD23 443 aa20.08■□□□□ 0.8
RETREG3-208ENST00000589797 SETD5Q9C0A6 1442 aa20.08■□□□□ 0.8
RETREG3-208ENST00000589797 NPM1P06748 294 aaKnown RBP eCLIP20.04■□□□□ 0.8
RETREG3-208ENST00000589797 DHX57Q6P158 1386 aaKnown RBP20.01■□□□□ 0.79
RETREG3-208ENST00000589797 ARHGAP35Q9NRY4 1499 aa20.01■□□□□ 0.79
RETREG3-208ENST00000589797 CLSPNQ9HAW4 1339 aa20■□□□□ 0.79
RETREG3-208ENST00000589797 KIF21BO75037 1637 aa20■□□□□ 0.79
RETREG3-208ENST00000589797 ARAP1Q96P48 1450 aa20■□□□□ 0.79
RETREG3-208ENST00000589797 CFTRP13569 1480 aa19.99■□□□□ 0.79
RETREG3-208ENST00000589797 TMC1Q8TDI8 760 aa19.97■□□□□ 0.79
RETREG3-208ENST00000589797 JPH4Q96JJ6 628 aa19.95■□□□□ 0.78
RETREG3-208ENST00000589797 AQRO60306 1485 aaKnown RBP eCLIP19.95■□□□□ 0.785e-6■■■□□ 18.1
RETREG3-208ENST00000589797 CUX1P39880 1505 aa19.94■□□□□ 0.78
RETREG3-208ENST00000589797 FMN1Q68DA7 1419 aa19.94■□□□□ 0.78
RETREG3-208ENST00000589797 MPHOSPH9Q99550 1183 aa19.92■□□□□ 0.78
RETREG3-208ENST00000589797 PHLDB1Q86UU1 1377 aa19.91■□□□□ 0.78
RETREG3-208ENST00000589797 PPP1R15AO75807 674 aaPredicted RBP19.91■□□□□ 0.78
RETREG3-208ENST00000589797 BCL11AQ9H165 835 aa19.91■□□□□ 0.78
RETREG3-208ENST00000589797 UNC13AQ9UPW8 1703 aa19.9■□□□□ 0.78
RETREG3-208ENST00000589797 CARD11Q9BXL7 1154 aa19.9■□□□□ 0.78
RETREG3-208ENST00000589797 ZNF644Q9H582 1327 aaPredicted RBP19.9■□□□□ 0.78
RETREG3-208ENST00000589797 PKD2Q13563 968 aa19.9■□□□□ 0.78
RETREG3-208ENST00000589797 HNRNPMP52272 730 aaKnown RBP eCLIP19.88■□□□□ 0.77
RETREG3-208ENST00000589797 DCAF11Q8TEB1 546 aa19.88■□□□□ 0.77
RETREG3-208ENST00000589797 HSPA5P11021 654 aaKnown RBP19.88■□□□□ 0.77
RETREG3-208ENST00000589797 L3MBTL2Q969R5 705 aa19.86■□□□□ 0.77
RETREG3-208ENST00000589797 GAPVD1Q14C86 1478 aa19.86■□□□□ 0.77
RETREG3-208ENST00000589797 PRXQ9BXM0 1461 aa19.85■□□□□ 0.77
RETREG3-208ENST00000589797 CC2D2AQ9P2K1 1620 aa19.85■□□□□ 0.77
RETREG3-208ENST00000589797 SUPT16HQ9Y5B9 1047 aaKnown RBP19.85■□□□□ 0.77
RETREG3-208ENST00000589797 STAG3Q9UJ98 1225 aa19.82■□□□□ 0.76
RETREG3-208ENST00000589797 TOP2BQ02880 1626 aa19.79■□□□□ 0.76
RETREG3-208ENST00000589797 DAXXQ9UER7 740 aaPredicted RBP19.74■□□□□ 0.75
RETREG3-208ENST00000589797 POLA1P09884 1462 aaPredicted RBP19.74■□□□□ 0.75
RETREG3-208ENST00000589797 NUP155O75694 1391 aa19.73■□□□□ 0.75
RETREG3-208ENST00000589797 CARMIL2Q6F5E8 1435 aa19.7■□□□□ 0.74
RETREG3-208ENST00000589797 TIMELESSQ9UNS1 1208 aa19.7■□□□□ 0.74
RETREG3-208ENST00000589797 HMGXB3Q12766 1538 aa19.7■□□□□ 0.74
RETREG3-208ENST00000589797 CC2D1BQ5T0F9 858 aaKnown RBP19.7■□□□□ 0.74
RETREG3-208ENST00000589797 NPM2Q86SE8 214 aaKnown RBP19.7■□□□□ 0.74
RETREG3-208ENST00000589797 TOPBP1Q92547 1522 aa19.69■□□□□ 0.74
RETREG3-208ENST00000589797 LRRC9Q6ZRR7 1453 aa19.69■□□□□ 0.74
RETREG3-208ENST00000589797 ESF1Q9H501 851 aaKnown RBP19.69■□□□□ 0.74
RETREG3-208ENST00000589797 CANXP27824 592 aaKnown RBP19.67■□□□□ 0.74
RETREG3-208ENST00000589797 GGT6Q6P531 493 aa19.65■□□□□ 0.74
RETREG3-208ENST00000589797 TNNT2P45379 298 aaPredicted RBP19.64■□□□□ 0.74
RETREG3-208ENST00000589797 CCDC136Q96JN2 1154 aa19.64■□□□□ 0.74
RETREG3-208ENST00000589797 SLC24A1O60721 1099 aa19.63■□□□□ 0.73
RETREG3-208ENST00000589797 ERICH3Q5RHP9 1530 aa19.62■□□□□ 0.73
RETREG3-208ENST00000589797 FGD6Q6ZV73 1430 aa19.62■□□□□ 0.73
RETREG3-208ENST00000589797 WDR43Q15061 677 aaKnown RBP eCLIP19.6■□□□□ 0.73
RETREG3-208ENST00000589797 PLEKHG5O94827 1062 aa19.59■□□□□ 0.73
RETREG3-208ENST00000589797 SAFB2Q14151 953 aaKnown RBP eCLIP19.59■□□□□ 0.73
RETREG3-208ENST00000589797 PEG3Q9GZU2 1588 aa19.58■□□□□ 0.73
RETREG3-208ENST00000589797 CCDC18Q5T9S5 1454 aa19.58■□□□□ 0.73
RETREG3-208ENST00000589797 MLECQ14165 292 aa19.57■□□□□ 0.72
RETREG3-208ENST00000589797 NEUROD2Q15784 382 aa19.57■□□□□ 0.72
RETREG3-208ENST00000589797 ANKRD30AQ9BXX3 1397 aa19.55■□□□□ 0.72
RETREG3-208ENST00000589797 B4GALNT3Q6L9W6 998 aa19.55■□□□□ 0.72
RETREG3-208ENST00000589797 PTPRGP23470 1445 aa19.54■□□□□ 0.72
RETREG3-208ENST00000589797 KIF3BO15066 747 aa19.54■□□□□ 0.72
RETREG3-208ENST00000589797 NUTM2DQ5VT03 806 aaPredicted RBP19.54■□□□□ 0.72
RETREG3-208ENST00000589797 EFCAB2Q5VUJ9 269 aa19.54■□□□□ 0.72
RETREG3-208ENST00000589797 RRBP1Q9P2E9 1410 aaKnown RBP19.54■□□□□ 0.72
RETREG3-208ENST00000589797 KNSTRNQ9Y448 316 aa19.53■□□□□ 0.72
RETREG3-208ENST00000589797 CASKIN1Q8WXD9 1431 aa19.53■□□□□ 0.72
RETREG3-208ENST00000589797 NCOA2Q15596 1464 aa19.52■□□□□ 0.72
RETREG3-208ENST00000589797 MYOM3Q5VTT5 1437 aa19.51■□□□□ 0.71
RETREG3-208ENST00000589797 ST20-MTHFSA0A0A6YYL1 179 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms