RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 LOC105371045A0A1W2PR82 267 aa17.15■□□□□ 0.34
VPS4B-204ENST00000589604 KIF21BO75037 1637 aa17.08■□□□□ 0.32
VPS4B-204ENST00000589604 KIAA0586Q9BVV6 1533 aa17.06■□□□□ 0.32
VPS4B-204ENST00000589604 SHROOM2Q13796 1616 aa17.05■□□□□ 0.32
VPS4B-204ENST00000589604 EHMT2Q96KQ7 1210 aa17.04■□□□□ 0.32
VPS4B-204ENST00000589604 ERCC6L2Q5T890 1561 aa17.03■□□□□ 0.32
VPS4B-204ENST00000589604 ARHGEF11O15085 1522 aa17.02■□□□□ 0.31
VPS4B-204ENST00000589604 CTTNBP2Q8WZ74 1663 aa17.01■□□□□ 0.31
VPS4B-204ENST00000589604 RIMBP3CA6NJZ7 1639 aa17.01■□□□□ 0.31
VPS4B-204ENST00000589604 RIMBP3BA6NNM3 1639 aa17.01■□□□□ 0.31
VPS4B-204ENST00000589604 RIMBP3Q9UFD9 1639 aa17.01■□□□□ 0.31
VPS4B-204ENST00000589604 IQGAP2Q13576 1575 aa17■□□□□ 0.31
VPS4B-204ENST00000589604 JPH4Q96JJ6 628 aa16.99■□□□□ 0.31
VPS4B-204ENST00000589604 GOLGA3Q08378 1498 aa16.97■□□□□ 0.31
VPS4B-204ENST00000589604 PRG4Q92954 1404 aaPredicted RBP16.96■□□□□ 0.31
VPS4B-204ENST00000589604 ARAP1Q96P48 1450 aa16.92■□□□□ 0.3
VPS4B-204ENST00000589604 UGGT2Q9NYU1 1516 aa16.92■□□□□ 0.3
VPS4B-204ENST00000589604 DISP1Q96F81 1524 aa16.92■□□□□ 0.3
VPS4B-204ENST00000589604 PLPPR3Q6T4P5 718 aa16.91■□□□□ 0.3
VPS4B-204ENST00000589604 UBTFP17480 764 aaKnown RBP16.89■□□□□ 0.29
VPS4B-204ENST00000589604 TNIKQ9UKE5 1360 aa16.86■□□□□ 0.29
VPS4B-204ENST00000589604 KIAA0556O60303 1618 aa16.85■□□□□ 0.29
VPS4B-204ENST00000589604 RANGAP1P46060 587 aaPredicted RBP16.85■□□□□ 0.29
VPS4B-204ENST00000589604 CYB5RLQ6IPT4 315 aa16.83■□□□□ 0.28
VPS4B-204ENST00000589604 SAMD9Q5K651 1589 aa16.83■□□□□ 0.28
VPS4B-204ENST00000589604 CARMIL2Q6F5E8 1435 aa16.81■□□□□ 0.28
VPS4B-204ENST00000589604 P3H3Q8IVL6 736 aa16.79■□□□□ 0.28
VPS4B-204ENST00000589604 TTBK1Q5TCY1 1321 aaPredicted RBP16.78■□□□□ 0.28
VPS4B-204ENST00000589604 ARHGAP35Q9NRY4 1499 aa16.76■□□□□ 0.27
VPS4B-204ENST00000589604 PTPRGP23470 1445 aa16.75■□□□□ 0.27
VPS4B-204ENST00000589604 FHOD3Q2V2M9 1422 aa16.75■□□□□ 0.27
VPS4B-204ENST00000589604 CEP162Q5TB80 1403 aa16.75■□□□□ 0.27
VPS4B-204ENST00000589604 EFCAB5A4FU69 1503 aa16.73■□□□□ 0.27
VPS4B-204ENST00000589604 ADCY10Q96PN6 1610 aa16.71■□□□□ 0.27
VPS4B-204ENST00000589604 PLB1Q6P1J6 1458 aa16.69■□□□□ 0.26
VPS4B-204ENST00000589604 CLIP1P30622 1438 aa16.69■□□□□ 0.26
VPS4B-204ENST00000589604 ABCA8O94911 1581 aa16.67■□□□□ 0.26
VPS4B-204ENST00000589604 UACAQ9BZF9 1416 aa16.65■□□□□ 0.26
VPS4B-204ENST00000589604 ABCC2Q92887 1545 aa16.64■□□□□ 0.25
VPS4B-204ENST00000589604 UHRF1BP1LA0JNW5 1464 aa16.63■□□□□ 0.25
VPS4B-204ENST00000589604 RAPGEF6Q8TEU7 1601 aa16.6■□□□□ 0.25
VPS4B-204ENST00000589604 NUP153P49790 1475 aaKnown RBP16.57■□□□□ 0.24
VPS4B-204ENST00000589604 KDM5BQ9UGL1 1544 aa16.57■□□□□ 0.24
VPS4B-204ENST00000589604 FMN1Q68DA7 1419 aa16.56■□□□□ 0.24
VPS4B-204ENST00000589604 ARID3CA6NKF2 412 aa16.56■□□□□ 0.24
VPS4B-204ENST00000589604 ZCCHC11Q5TAX3 1644 aaKnown RBP16.56■□□□□ 0.24
VPS4B-204ENST00000589604 PCF11O94913 1555 aaKnown RBP16.55■□□□□ 0.24
VPS4B-204ENST00000589604 LRRIQ1Q96JM4 1722 aa16.54■□□□□ 0.24
VPS4B-204ENST00000589604 ATP10BO94823 1461 aa16.53■□□□□ 0.24
VPS4B-204ENST00000589604 MAPKBP1O60336 1514 aa16.5■□□□□ 0.23
VPS4B-204ENST00000589604 CDK13Q14004 1512 aaKnown RBP16.5■□□□□ 0.23
VPS4B-204ENST00000589604 CASKIN1Q8WXD9 1431 aa16.5■□□□□ 0.23
VPS4B-204ENST00000589604 VPS8Q8N3P4 1428 aa16.49■□□□□ 0.23
VPS4B-204ENST00000589604 NPM1P06748 294 aaKnown RBP eCLIP16.49■□□□□ 0.23
VPS4B-204ENST00000589604 HECW1Q76N89 1606 aa16.48■□□□□ 0.23
VPS4B-204ENST00000589604 ASXL2Q76L83 1435 aa16.48■□□□□ 0.23
VPS4B-204ENST00000589604 ATP1B4Q9UN42 357 aaPredicted RBP16.46■□□□□ 0.23
VPS4B-204ENST00000589604 EPRSP07814 1512 aaKnown RBP16.46■□□□□ 0.23
VPS4B-204ENST00000589604 FYCO1Q9BQS8 1478 aa16.46■□□□□ 0.23
VPS4B-204ENST00000589604 KIF13AQ9H1H9 1805 aa16.42■□□□□ 0.22
VPS4B-204ENST00000589604 DIP2BQ9P265 1576 aa16.42■□□□□ 0.22
VPS4B-204ENST00000589604 SLC24A1O60721 1099 aa16.41■□□□□ 0.22
VPS4B-204ENST00000589604 ABCC10Q5T3U5 1492 aa16.41■□□□□ 0.22
VPS4B-204ENST00000589604 WDR7Q9Y4E6 1490 aa16.41■□□□□ 0.22
VPS4B-204ENST00000589604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.4■□□□□ 0.22
VPS4B-204ENST00000589604 HNRNPUL2Q1KMD3 747 aaKnown RBP16.4■□□□□ 0.22
VPS4B-204ENST00000589604 MAGI3Q5TCQ9 1506 aa16.39■□□□□ 0.21
VPS4B-204ENST00000589604 TRHP20396 242 aaPredicted RBP16.37■□□□□ 0.21
VPS4B-204ENST00000589604 CCDC18Q5T9S5 1454 aa16.36■□□□□ 0.21
VPS4B-204ENST00000589604 FAM69CQ0P6D2 419 aa16.35■□□□□ 0.21
VPS4B-204ENST00000589604 KCNH8Q96L42 1107 aa16.35■□□□□ 0.21
VPS4B-204ENST00000589604 GLI2P10070 1586 aa16.34■□□□□ 0.21
VPS4B-204ENST00000589604 CFAP43Q8NDM7 1665 aa16.33■□□□□ 0.2
VPS4B-204ENST00000589604 PLEKHD1A6NEE1 506 aa16.32■□□□□ 0.2
VPS4B-204ENST00000589604 KCNA4P22459 653 aa16.32■□□□□ 0.2
VPS4B-204ENST00000589604 TIAM1Q13009 1591 aa16.32■□□□□ 0.2
VPS4B-204ENST00000589604 KIF14Q15058 1648 aa16.32■□□□□ 0.2
VPS4B-204ENST00000589604 PPARGC1BQ86YN6 1023 aaKnown RBP16.31■□□□□ 0.2
VPS4B-204ENST00000589604 TROQ12816 1431 aaPredicted RBP16.3■□□□□ 0.2
VPS4B-204ENST00000589604 MAP3K4Q9Y6R4 1608 aa16.3■□□□□ 0.2
VPS4B-204ENST00000589604 PPRC1Q5VV67 1664 aaKnown RBP16.29■□□□□ 0.2
VPS4B-204ENST00000589604 ABCA9Q8IUA7 1624 aa16.29■□□□□ 0.2
VPS4B-204ENST00000589604 TTC37Q6PGP7 1564 aa16.28■□□□□ 0.2
VPS4B-204ENST00000589604 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.28■□□□□ 0.2
VPS4B-204ENST00000589604 TSPOAP1O95153 1857 aa16.27■□□□□ 0.2
VPS4B-204ENST00000589604 KANK4Q5T7N3 995 aaPredicted RBP16.27■□□□□ 0.19
VPS4B-204ENST00000589604 MAP3K1Q13233 1512 aa16.26■□□□□ 0.19
VPS4B-204ENST00000589604 CDK11AQ9UQ88 783 aaPredicted RBP16.25■□□□□ 0.19
VPS4B-204ENST00000589604 LRRC9Q6ZRR7 1453 aa16.24■□□□□ 0.19
VPS4B-204ENST00000589604 CD109Q6YHK3 1445 aa16.23■□□□□ 0.19
VPS4B-204ENST00000589604 EHBP1L1Q8N3D4 1523 aa16.23■□□□□ 0.19
VPS4B-204ENST00000589604 MTUS2Q5JR59 1369 aa16.23■□□□□ 0.19
VPS4B-204ENST00000589604 TRIM26Q12899 539 aaPredicted RBP16.21■□□□□ 0.18
VPS4B-204ENST00000589604 APLP2Q06481 763 aa16.2■□□□□ 0.18
VPS4B-204ENST00000589604 CDC42BPAQ5VT25 1732 aa16.17■□□□□ 0.18
VPS4B-204ENST00000589604 NCOA2Q15596 1464 aa16.16■□□□□ 0.18
VPS4B-204ENST00000589604 MYO5CQ9NQX4 1742 aa16.16■□□□□ 0.18
VPS4B-204ENST00000589604 PLCH2O75038 1416 aa16.15■□□□□ 0.18
VPS4B-204ENST00000589604 SUPT6HQ7KZ85 1726 aaKnown RBP16.15■□□□□ 0.18
VPS4B-204ENST00000589604 CDC42BPBQ9Y5S2 1711 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms