RNA–Protein interactions for RNA: ENST00000589447.1

LINC01539-203, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 4

Gene LINC01539, Length 575 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-203ENST00000589447 PRDM2Q13029 1718 aa5.32□□□□□ -1.56
LINC01539-203ENST00000589447 WIZO95785 1651 aa5.32□□□□□ -1.56
LINC01539-203ENST00000589447 ZEB1P37275 1124 aaPredicted RBP5.32□□□□□ -1.56
LINC01539-203ENST00000589447 OSCARQ8IYS5 282 aa5.32□□□□□ -1.56
LINC01539-203ENST00000589447 CUX2O14529 1486 aa5.32□□□□□ -1.56
LINC01539-203ENST00000589447 NCAPD3P42695 1498 aa5.32□□□□□ -1.56
LINC01539-203ENST00000589447 SPDYE2BA6NHP3 402 aa5.31□□□□□ -1.56
LINC01539-203ENST00000589447 SPDYE6P0CI01 402 aa5.31□□□□□ -1.56
LINC01539-203ENST00000589447 SPDYE2Q495Y8 402 aa5.31□□□□□ -1.56
LINC01539-203ENST00000589447 GTF3C3Q9Y5Q9 886 aa5.31□□□□□ -1.56
LINC01539-203ENST00000589447 BAZ1AQ9NRL2 1556 aaPredicted RBP5.3□□□□□ -1.56
LINC01539-203ENST00000589447 ERCC6Q03468 1493 aa5.29□□□□□ -1.56
LINC01539-203ENST00000589447 BAZ1BQ9UIG0 1483 aaKnown RBP5.28□□□□□ -1.56
LINC01539-203ENST00000589447 MYT1Q01538 1121 aa5.28□□□□□ -1.56
LINC01539-203ENST00000589447 TRIM26Q12899 539 aaPredicted RBP5.28□□□□□ -1.56
LINC01539-203ENST00000589447 CHRDL2Q6WN34 429 aa5.28□□□□□ -1.56
LINC01539-203ENST00000589447 PPARGC1BQ86YN6 1023 aaKnown RBP5.28□□□□□ -1.56
LINC01539-203ENST00000589447 LAMC3Q9Y6N6 1575 aa5.28□□□□□ -1.56
LINC01539-203ENST00000589447 RANGAP1P46060 587 aaPredicted RBP5.27□□□□□ -1.57
LINC01539-203ENST00000589447 DNAJC5Q9H3Z4 198 aa5.27□□□□□ -1.57
LINC01539-203ENST00000589447 WDR62O43379 1518 aa5.24□□□□□ -1.57
LINC01539-203ENST00000589447 REM2Q8IYK8 340 aaPredicted RBP5.24□□□□□ -1.57
LINC01539-203ENST00000589447 MKRN4PQ13434 485 aaPredicted RBP5.23□□□□□ -1.57
LINC01539-203ENST00000589447 SSUH2Q9Y2M2 353 aa5.23□□□□□ -1.57
LINC01539-203ENST00000589447 KDM2AQ9Y2K7 1162 aa5.2□□□□□ -1.58
LINC01539-203ENST00000589447 PITPNM1O00562 1244 aa5.19□□□□□ -1.58
LINC01539-203ENST00000589447 TMEM132AQ24JP5 1023 aa5.19□□□□□ -1.58
LINC01539-203ENST00000589447 CHD1O14646 1710 aa5.19□□□□□ -1.58
LINC01539-203ENST00000589447 MRC2Q9UBG0 1479 aa5.19□□□□□ -1.58
LINC01539-203ENST00000589447 TOP2AP11388 1531 aaKnown RBP5.18□□□□□ -1.58
LINC01539-203ENST00000589447 SPDYE1Q8NFV5 336 aaPredicted RBP5.18□□□□□ -1.58
LINC01539-203ENST00000589447 ZNF692Q9BU19 519 aaPredicted RBP5.18□□□□□ -1.58
LINC01539-203ENST00000589447 URB2Q14146 1524 aaKnown RBP5.18□□□□□ -1.58
LINC01539-203ENST00000589447 EIF4G3O43432 1585 aaKnown RBP5.16□□□□□ -1.58
LINC01539-203ENST00000589447 FXR2P51116 673 aaKnown RBP eCLIP5.15□□□□□ -1.59
LINC01539-203ENST00000589447 RIMBP3CA6NJZ7 1639 aa5.15□□□□□ -1.59
LINC01539-203ENST00000589447 RIMBP3BA6NNM3 1639 aa5.15□□□□□ -1.59
LINC01539-203ENST00000589447 RIMBP3Q9UFD9 1639 aa5.15□□□□□ -1.59
LINC01539-203ENST00000589447 CEP164Q9UPV0 1460 aa5.14□□□□□ -1.59
LINC01539-203ENST00000589447 LOC105371045A0A1W2PR82 267 aa5.14□□□□□ -1.59
LINC01539-203ENST00000589447 PIP4P2Q8N4L2 257 aa5.14□□□□□ -1.59
LINC01539-203ENST00000589447 TTBK1Q5TCY1 1321 aaPredicted RBP5.14□□□□□ -1.59
LINC01539-203ENST00000589447 FANCD2Q9BXW9 1451 aa5.13□□□□□ -1.59
LINC01539-203ENST00000589447 WDR97A6NE52 1622 aa5.13□□□□□ -1.59
LINC01539-203ENST00000589447 PODXL2Q9NZ53 605 aa5.13□□□□□ -1.59
LINC01539-203ENST00000589447 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.13□□□□□ -1.59
LINC01539-203ENST00000589447 CENPBP07199 599 aaPredicted RBP5.12□□□□□ -1.59
LINC01539-203ENST00000589447 C14orf37Q86TY3 774 aa5.12□□□□□ -1.59
LINC01539-203ENST00000589447 FBXO3Q9UK99 471 aa5.12□□□□□ -1.59
LINC01539-203ENST00000589447 TARBP1Q13395 1621 aaKnown RBP5.12□□□□□ -1.59
LINC01539-203ENST00000589447 BBXQ8WY36 941 aaPredicted RBP5.11□□□□□ -1.59
LINC01539-203ENST00000589447 CADPSQ9ULU8 1353 aa5.11□□□□□ -1.59
LINC01539-203ENST00000589447 RSF1Q96T23 1441 aaPredicted RBP5.11□□□□□ -1.59
LINC01539-203ENST00000589447 CFTRP13569 1480 aa5.11□□□□□ -1.59
LINC01539-203ENST00000589447 ZNF608Q9ULD9 1512 aaPredicted RBP5.11□□□□□ -1.59
LINC01539-203ENST00000589447 SP7Q8TDD2 431 aaPredicted RBP5.1□□□□□ -1.59
LINC01539-203ENST00000589447 PDS5BQ9NTI5 1447 aa5.1□□□□□ -1.59
LINC01539-203ENST00000589447 ACIN1Q9UKV3 1341 aaKnown RBP5.1□□□□□ -1.59
LINC01539-203ENST00000589447 TRIM41Q8WV44 630 aa5.09□□□□□ -1.59
LINC01539-203ENST00000589447 PBRM1Q86U86 1689 aa5.08□□□□□ -1.6
LINC01539-203ENST00000589447 TOPBP1Q92547 1522 aa5.07□□□□□ -1.6
LINC01539-203ENST00000589447 STAG3Q9UJ98 1225 aa5.07□□□□□ -1.6
LINC01539-203ENST00000589447 CLEC11AQ9Y240 323 aa5.07□□□□□ -1.6
LINC01539-203ENST00000589447 DNMBPQ6XZF7 1577 aa5.07□□□□□ -1.6
LINC01539-203ENST00000589447 SPDYE4A6NLX3 237 aa5.06□□□□□ -1.6
LINC01539-203ENST00000589447 NBR1Q14596 966 aa5.06□□□□□ -1.6
LINC01539-203ENST00000589447 ARHGEF11O15085 1522 aa5.06□□□□□ -1.6
LINC01539-203ENST00000589447 CCDC88BA6NC98 1476 aa5.06□□□□□ -1.6
LINC01539-203ENST00000589447 PRR29P0C7W0 189 aa5.04□□□□□ -1.6
LINC01539-203ENST00000589447 PRKAR2AP13861 404 aaKnown RBP5.04□□□□□ -1.6
LINC01539-203ENST00000589447 CLASP1Q7Z460 1538 aa5.03□□□□□ -1.6
LINC01539-203ENST00000589447 ARAP1Q96P48 1450 aa5.03□□□□□ -1.6
LINC01539-203ENST00000589447 PAXIP1Q6ZW49 1069 aaPredicted RBP5.03□□□□□ -1.6
LINC01539-203ENST00000589447 NPM2Q86SE8 214 aaKnown RBP5.03□□□□□ -1.6
LINC01539-203ENST00000589447 CCER1Q8TC90 406 aaPredicted RBP5.03□□□□□ -1.6
LINC01539-203ENST00000589447 POLA1P09884 1462 aaPredicted RBP5.02□□□□□ -1.61
LINC01539-203ENST00000589447 ABCA5Q8WWZ7 1642 aa5.02□□□□□ -1.61
LINC01539-203ENST00000589447 NEUROD1Q13562 356 aa5.02□□□□□ -1.61
LINC01539-203ENST00000589447 PKD2Q13563 968 aa5.02□□□□□ -1.61
LINC01539-203ENST00000589447 PROM2Q8N271 834 aa5.02□□□□□ -1.61
LINC01539-203ENST00000589447 CUX1P39880 1505 aa5.02□□□□□ -1.61
LINC01539-203ENST00000589447 WRNQ14191 1432 aaPredicted RBP eCLIP5.01□□□□□ -1.61
LINC01539-203ENST00000589447 DIEXFQ68CQ4 756 aaKnown RBP5.01□□□□□ -1.61
LINC01539-203ENST00000589447 IFT140Q96RY7 1462 aa5□□□□□ -1.61
LINC01539-203ENST00000589447 ERCC6L2Q5T890 1561 aa5□□□□□ -1.61
LINC01539-203ENST00000589447 HAX1O00165 279 aa5□□□□□ -1.61
LINC01539-203ENST00000589447 RAD54L2Q9Y4B4 1467 aa5□□□□□ -1.61
LINC01539-203ENST00000589447 KIF13AQ9H1H9 1805 aa5□□□□□ -1.61
LINC01539-203ENST00000589447 KLHL34Q8N239 644 aa4.99□□□□□ -1.61
LINC01539-203ENST00000589447 SPRYD3Q8NCJ5 442 aa4.99□□□□□ -1.61
LINC01539-203ENST00000589447 CFAP44Q96MT7 982 aa4.99□□□□□ -1.61
LINC01539-203ENST00000589447 FGD5Q6ZNL6 1462 aa4.99□□□□□ -1.61
LINC01539-203ENST00000589447 CLSPNQ9HAW4 1339 aa4.98□□□□□ -1.61
LINC01539-203ENST00000589447 C19orf67A6NJJ6 358 aa4.98□□□□□ -1.61
LINC01539-203ENST00000589447 VASPP50552 380 aaPredicted RBP4.98□□□□□ -1.61
LINC01539-203ENST00000589447 FAM9AQ8IZU1 332 aaPredicted RBP4.98□□□□□ -1.61
LINC01539-203ENST00000589447 TSHZ2Q9NRE2 1034 aa4.98□□□□□ -1.61
LINC01539-203ENST00000589447 AQRO60306 1485 aaKnown RBP eCLIP4.98□□□□□ -1.61
LINC01539-203ENST00000589447 SYNJ1O43426 1573 aa4.97□□□□□ -1.61
LINC01539-203ENST00000589447 ADAMTS12P58397 1594 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms